Rh7BG462700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001043
Physical Location & Seq
Reverse (-)
54835730 .. 54839121
3392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG462700.1

Sequence Viewer

Length: 369 bp
ATGAGTTTTGATAAACCACTGAAGTATGATTGTTATGAAGATTCTGAAGTTTGTGATGGTGGTGTGGAGGACCAAAGGAAAAATGATTGTGTTCTAATTGCTAGAAATTGTGATGAGTCCTCTAGTAAAAATAGCAAAGAACTTGACATTGGAAAACAACTTGAAGGAGAAGATGAAAATTTGTTTGTATTGGATAAAATGTTTACCACTGCCTTTGTTAGTTCTCTTCGTGAAGCTATTGATCCAAAATTGAATGTTGATTTGGTGCCTTCATGCTCATGGAAAGATAATGTTTTATACATTTTAAAAGAGAACTCGAATGGAATGGAGGAATCTTGGGTGAGCAATGGTACATTCCATAACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.88

Weight (kDa)

4.43

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 2 cut(s) 41, 66
AfaI GTAC 1 cut(s) 352
AgsI TTSAA 2 cut(s) 164, 253
AjuI GAANNNNNNNTTGG 4 cut(s) 132, 164, 245, 277
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
AlwI GGATC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 352
AvaII GGWCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 265
BccI CCATC 1 cut(s) 50
BfaI CTAG 2 cut(s) 102, 123
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 352
BshNI GGYRCC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 352
BssMI GATC 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 231
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 17, 207
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 351
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 2 cut(s) 273, 279
CviJI RGCY 1 cut(s) 236
CviKI_1 RGCY 1 cut(s) 236
CviQI GTAC 1 cut(s) 351
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
DraI TTTAAA 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 41, 66
FaeI CATG 2 cut(s) 276, 282
FaiI YATR 6 cut(s) 27, 36, 274, 280, 298, 360
FatI CATG 2 cut(s) 272, 278
FspBI CTAG 2 cut(s) 102, 123
Hin1II CATG 2 cut(s) 276, 282
HinfI GANTC 3 cut(s) 41, 116, 332
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 2 cut(s) 158, 279
Hsp92II CATG 2 cut(s) 276, 282
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 1 cut(s) 349
MaeI CTAG 2 cut(s) 102, 123
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 3 cut(s) 50, 182, 218
MluCI AATT 4 cut(s) 96, 106, 178, 248
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 3 cut(s) 61, 130, 322
MseI TTAA 1 cut(s) 305
MslI CAYNNNNRTG 1 cut(s) 277
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 276, 282
NlaIV GGNNCC 1 cut(s) 267
PfeI GAWTC 2 cut(s) 41, 332
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 70
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 277
SaqAI TTAA 1 cut(s) 305
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 125
SetI ASST 2 cut(s) 238, 368
SgeI CNNG 9 cut(s) 114, 135, 155, 173, 242, 285, 291, 328, 348
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 277
Sse9I AATT 4 cut(s) 96, 106, 178, 248
SspMI CTAG 2 cut(s) 102, 123
TaqI TCGA 1 cut(s) 317
TasI AATT 4 cut(s) 96, 106, 178, 248
TfiI GAWTC 2 cut(s) 41, 332
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 2 cut(s) 24, 214
TspDTI ATGAA 3 cut(s) 51, 189, 261
TspRI CASTG 2 cut(s) 24, 214
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 178
XspI CTAG 2 cut(s) 102, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.