Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002676.1

Orthogroup ID

OG0001043

Physical Location & Seq

Genomic Coordinates Forward (+)

49744 .. 51311

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002676.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgtctcaggtcggttgtgacatcaacaacgacatggctgaaatcaaaaggatgcttcagcaacttgtggtacgtgtcaatcacatcgaagctcgactacgggtcgtaagagtttcgacggggagagaaatgttaccatctatcatcaatgtgttgatcgcatcgaaactttgtaccaagatggtgatggttctgacggggagatatgcattggctctattcataattgtgctccactgtgaccaaaggaaaaaagattgtgttctaattgctagaaattgtgatgagtcctctagtaaaaatagcaaagaacttgacattggaaaacagcttgaaggagaagatgaaaatttgtttgtattggataaaatgtttaccaccgcctttgttagttctcttcgtgaagctattgatccaaaattgaatgttgatttggtgccttcatgctcatggaaagatattgttttatacattttaaaagagaactcgaatggaatggaggaatcttgggtgatcaatgtatcgaagatatccgtccagtccgacccagacccggctgactcgaccctacttttcaggtggtctccggcggtgaaactttccagatcagctcgtctccgccgtacgatcctccctctggcatcctctagcggcggtgacggagcagcaaaacggcgaactttggggtattcggaccaggccgtaaaacacagctccagtggcgccactacttcatgcttcttcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

27.67

Weight (kDa)

8.83

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07634
prunus_persica	Prupe.1G102800_v2.0.a1 Prupe.8G086900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0246931
rosa_laevigata	RLG00000003129 RLG00000005865 RLG00000005867 RLG00000008042 RLG00000017998 RLG00000019187 RLG00000019483 RLG00000022446 RLG00000023139 RLG00000032380 RLG00000034989 RLG00000037076
rosa_multiflora	Rmu_co8397459.1_g000001 Rmu_sc0000195.1_g000037 Rmu_sc0000516.1_g000018 Rmu_sc0001091.1_g000004 Rmu_sc0001113.1_g000012 Rmu_sc0001673.1_g000033 Rmu_sc0001694.1_g000016 Rmu_sc0001793.1_g000051 Rmu_sc0002676.1_g000007 Rmu_sc0002986.1_g000020 Rmu_sc0004253.1_g000001 Rmu_sc0004478.1_g000012 Rmu_sc0004614.1_g000007 Rmu_sc0005387.1_g000002 Rmu_sc0006592.1_g000013 Rmu_sc0006967.1_g000011 Rmu_sc0011039.1_g000002 Rmu_sc0016880.1_g000004 Rmu_ssc0000182.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024880 Rroxscaffold_1G00053230 Rroxscaffold_1G00068810 Rroxscaffold_1G00068820 Rroxscaffold_2G00094300 Rroxscaffold_2G00095320 Rroxscaffold_2G00095330 Rroxscaffold_2G00108180 Rroxscaffold_2G00130520 Rroxscaffold_2G00131280 Rroxscaffold_3G00229800 Rroxscaffold_4G00279060 Rroxscaffold_4G00312500 Rroxscaffold_4G00312510 Rroxscaffold_7G00215840
rosa_samantha	Rh1BG408300 Rh3AG269100 Rh3CG198400 Rh3CG303300 Rh5AG056400 Rh5DG052900 Rh5DG388100 Rh7BG462700 Rh7CG506000
rosa_wichuraiana	Rw1G013080 Rw2G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	436, 722
AciI	CCGC	5 cut(s)	381, 590, 619, 651, 654
AclWI	GGATC	2 cut(s)	407, 622
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	723
AfaI	GTAC	3 cut(s)	72, 175, 625
AfiI	CCNNNNNNNGG	2 cut(s)	553, 637
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	335, 424
AhdI	GACNNNNNGTC	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	696
AjuI	GAANNNNNNNTTGG	4 cut(s)	303, 335, 416, 448
AluBI	AGCT	5 cut(s)	92, 331, 407, 611, 714
AluI	AGCT	5 cut(s)	92, 331, 407, 611, 714
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	3 cut(s)	9, 588, 620
AlwI	GGATC	2 cut(s)	407, 622
AoxI	GGCC	1 cut(s)	699
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	725
AspS9I	GGNCC	1 cut(s)	694
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	4 cut(s)	196, 523, 604, 668
AvaII	GGWCC	1 cut(s)	694
BanI	GGYRCC	2 cut(s)	436, 722
BarI	GAAGNNNNNNTAC	2 cut(s)	81, 113
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	677
BccI	CCATC	3 cut(s)	145, 175, 181
BceAI	ACGGC	3 cut(s)	606, 686, 689
BciT130I	CCWGG	1 cut(s)	698
BclI	TGATCA	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	3 cut(s)	9, 588, 620
BfaI	CTAG	3 cut(s)	273, 294, 648
BfoI	RGCGCY	1 cut(s)	726
BisI	GCNGC	2 cut(s)	652, 666
BlsI	GCNGC	2 cut(s)	653, 667
Bme1390I	CCNGG	2 cut(s)	554, 698
Bme18I	GGWCC	1 cut(s)	694
BmeRI	GACNNNNNGTC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	2 cut(s)	438, 724
BmrFI	CCNGG	2 cut(s)	554, 698
BmsI	GCATC	3 cut(s)	42, 170, 650
BpmI	CTGGAG	1 cut(s)	700
BpuMI	CCSGG	1 cut(s)	554
BsaAI	YACGTR	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	723
BsaI	GGTCTC	1 cut(s)	588
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 637
Bse1I	ACTGG	2 cut(s)	538, 717
BseBI	CCWGG	1 cut(s)	698
BseGI	GGATG	2 cut(s)	57, 641
BseLI	CCNNNNNNNGG	2 cut(s)	553, 637
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	2 cut(s)	538, 717
BseXI	GCAGC	1 cut(s)	677
BshFI	GGCC	1 cut(s)	701
BshNI	GGYRCC	2 cut(s)	436, 722
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	554, 587
BsiWI	CGTACG	1 cut(s)	623
BslI	CCNNNNNNNGG	2 cut(s)	553, 637
BsmAI	GTCTC	3 cut(s)	9, 588, 620
BsmBI	CGTCTC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	701
Bso31I	GGTCTC	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	5 cut(s)	156, 412, 513, 605, 627
BspACI	CCGC	5 cut(s)	381, 590, 619, 651, 654
BspANI	GGCC	1 cut(s)	701
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	2 cut(s)	438, 724
BspPI	GGATC	2 cut(s)	407, 622
BspT107I	GGYRCC	2 cut(s)	436, 722
BspTNI	GGTCTC	1 cut(s)	588
BsrI	ACTGG	2 cut(s)	538, 717
BssMI	GATC	5 cut(s)	156, 412, 513, 605, 627
BssNI	GRCGYC	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	402
BstACI	GRCGYC	1 cut(s)	723
BstBAI	YACGTR	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	57, 641
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	5 cut(s)	159, 415, 516, 608, 630
BstMAI	GTCTC	3 cut(s)	9, 588, 620
BstMBI	GATC	5 cut(s)	156, 412, 513, 605, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	720
BstNI	CCWGG	1 cut(s)	698
BstSCI	CCNGG	2 cut(s)	552, 696
BstV1I	GCAGC	1 cut(s)	677
BsuRI	GGCC	1 cut(s)	701
BtsCI	GGATG	2 cut(s)	57, 641
BtsIMutI	CAGTG	2 cut(s)	235, 724
CfoI	GCGC	1 cut(s)	725
Cfr13I	GGNCC	1 cut(s)	694
Csp6I	GTAC	3 cut(s)	71, 174, 624
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	4 cut(s)	34, 444, 450, 735
CviJI	RGCY	9 cut(s)	38, 92, 215, 331, 407, 557, 611, 701, 714
CviKI_1	RGCY	9 cut(s)	38, 92, 215, 331, 407, 557, 611, 701, 714
CviQI	GTAC	3 cut(s)	71, 174, 624
DdeI	CTNAG	1 cut(s)	6
DinI	GGCGCC	1 cut(s)	724
DpnI	GATC	5 cut(s)	158, 414, 515, 607, 629
DpnII	GATC	5 cut(s)	156, 412, 513, 605, 627
DraI	TTTAAA	1 cut(s)	477
DriI	GACNNNNNGTC	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	402
Eam1105I	GACNNNNNGTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	402
EciI	GGCGGA	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	588
Eco32I	GATATC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	696
EcoRV	GATATC	1 cut(s)	531
EcoT22I	ATGCAT	1 cut(s)	211
EgeI	GGCGCC	1 cut(s)	724
EheI	GGCGCC	1 cut(s)	724
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	4 cut(s)	37, 447, 453, 738
FaiI	YATR	7 cut(s)	35, 207, 224, 445, 451, 469, 736
FatI	CATG	4 cut(s)	33, 443, 449, 734
FbaI	TGATCA	1 cut(s)	513
Fnu4HI	GCNGC	2 cut(s)	652, 666
FokI	GGATG	2 cut(s)	64, 628
Fsp4HI	GCNGC	2 cut(s)	652, 666
FspBI	CTAG	3 cut(s)	273, 294, 648
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	2 cut(s)	652, 666
GsuI	CTGGAG	1 cut(s)	700
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	701
HapII	CCGG	2 cut(s)	554, 587
HhaI	GCGC	1 cut(s)	725
Hin1I	GRCGYC	1 cut(s)	723
Hin1II	CATG	4 cut(s)	37, 447, 453, 738
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HinfI	GANTC	3 cut(s)	287, 503, 560
HpaII	CCGG	2 cut(s)	554, 587
HphI	GGTGA	4 cut(s)	196, 523, 604, 668
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	3 cut(s)	195, 544, 694
Hpy188III	TCNNGA	2 cut(s)	401, 603
Hpy8I	GTNNAC	1 cut(s)	375
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	329, 450
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	720
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	73
Hsp92I	GRCGYC	1 cut(s)	723
Hsp92II	CATG	4 cut(s)	37, 447, 453, 738
HspAI	GCGC	1 cut(s)	723
KasI	GGCGCC	1 cut(s)	722
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	5 cut(s)	156, 412, 513, 605, 627
LmnI	GCTCC	3 cut(s)	237, 662, 719
Lsp1109I	GCAGC	1 cut(s)	677
LweI	GCATC	3 cut(s)	42, 170, 650
MaeI	CTAG	3 cut(s)	273, 294, 648
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	4 cut(s)	17, 132, 239, 656
MalI	GATC	5 cut(s)	158, 414, 515, 607, 629
MboI	GATC	5 cut(s)	156, 412, 513, 605, 627
MboII	GAAGA	4 cut(s)	353, 389, 538, 733
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	5 cut(s)	225, 267, 277, 349, 419
Mly113I	GGCGCC	1 cut(s)	723
MlyI	GAGTC	2 cut(s)	296, 554
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	5 cut(s)	301, 493, 641, 645, 655
Mph1103I	ATGCAT	1 cut(s)	211
MseI	TTAA	1 cut(s)	476
MslI	CAYNNNNRTG	3 cut(s)	149, 227, 448
MspI	CCGG	2 cut(s)	554, 587
MspR9I	CCNGG	2 cut(s)	554, 698
MvaI	CCWGG	1 cut(s)	698
MwoI	GCNNNNNNNGC	1 cut(s)	720
NarI	GGCGCC	1 cut(s)	723
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	5 cut(s)	156, 412, 513, 605, 627
NlaIII	CATG	4 cut(s)	37, 447, 453, 738
NlaIV	GGNNCC	2 cut(s)	438, 724
NmuCI	GTSAC	3 cut(s)	17, 239, 656
NsiI	ATGCAT	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	619
PfeI	GAWTC	1 cut(s)	503
Pfl23II	CGTACG	1 cut(s)	623
PkrI	GCNGC	2 cut(s)	653, 667
PleI	GAGTC	2 cut(s)	295, 554
PluTI	GGCGCC	1 cut(s)	726
PpsI	GAGTC	2 cut(s)	295, 554
Ppu21I	YACGTR	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	696
PspLI	CGTACG	1 cut(s)	623
PspN4I	GGNNCC	2 cut(s)	438, 724
PspPI	GGNCC	1 cut(s)	694
RsaI	GTAC	3 cut(s)	72, 175, 625
RsaNI	GTAC	3 cut(s)	71, 174, 624
RseI	CAYNNNNRTG	3 cut(s)	149, 227, 448
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	2 cut(s)	652, 666
Sau3AI	GATC	5 cut(s)	156, 412, 513, 605, 627
Sau96I	GGNCC	1 cut(s)	694
SchI	GAGTC	2 cut(s)	296, 554
ScrFI	CCNGG	2 cut(s)	554, 698
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	8 cut(s)	12, 76, 94, 333, 409, 581, 613, 716
SfaNI	GCATC	3 cut(s)	42, 170, 650
SfoI	GGCGCC	1 cut(s)	724
SinI	GGWCC	1 cut(s)	694
SmiMI	CAYNNNNRTG	3 cut(s)	149, 227, 448
Sse9I	AATT	5 cut(s)	225, 267, 277, 349, 419
SsiI	CCGC	5 cut(s)	381, 590, 619, 651, 654
SspDI	GGCGCC	1 cut(s)	722
SspMI	CTAG	3 cut(s)	273, 294, 648
StyD4I	CCNGG	2 cut(s)	552, 696
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	7 cut(s)	87, 94, 116, 164, 488, 524, 563
TasI	AATT	5 cut(s)	225, 267, 277, 349, 419
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	2 cut(s)	242, 724
TseFI	GTSAC	3 cut(s)	17, 239, 656
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	3 cut(s)	17, 239, 656
TspDTI	ATGAA	4 cut(s)	211, 360, 432, 723
TspGWI	ACGGA	2 cut(s)	523, 675
TspRI	CASTG	2 cut(s)	242, 724
VpaK11BI	GGWCC	1 cut(s)	694
XapI	RAATTY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XspI	CTAG	3 cut(s)	273, 294, 648
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.