Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001043

Physical Location & Seq

Genomic Coordinates Reverse (-)

24831801 .. 24833852

Gene Structure 2052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGTTTTGATAAACCATCGAAGTATGATTGTTATGAAGATTCTGAAGTTTGTGATGGTGGTGTGGAGGTCCAAAGGAAAAATAATTTTGTTCCTAGAAATTGTGATGATGAAGACGACAATAAAGATGCAATCAAGTCAATATTGTGGAAAGATATTGAGCATAAATTTGTTGATTTTGTTGGAGTTAATGCATTCATTATGTATGTTCTCAAAGAATTAGTTAATCTTGTCAATCAGATAAAGGATGATGAGAAAAATTTTGGGATTGGAGGATCCCGTCACCTCCACCATTCTCATCTCGACAATCTTGCCAAGCGGCTAATCGTTTCATTCCTCGCTTTGATGGATCGCGGGGAGGAGATCTTGGTTTGGGCTCGGGCAGCAACTTCCTTCCTACAGGGATTGGCAAATTTTCGATGGCGGAACTGGATTGTTGTTTGTGCTAGTGCAGAGCGGCGGCTAGGTCTTGATCTATTTGGGATTGATGCTGGCGGCGGCGTCATTGAAGTGGCAAGGGATGATCGACCGCAGCGACAGGATTGGTCAAGCACTGAGTCTGGGTGCCTTGTTCTTGGGTGTCCAGATCAGTGTGATGGGGTACCCACGAGATTTATGGAAGATCTGGGTTTGGGACCCGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.21

Weight (kDa)

4.89

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07634
prunus_persica	Prupe.1G102800_v2.0.a1 Prupe.8G086900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0246931
rosa_laevigata	RLG00000003129 RLG00000005865 RLG00000005867 RLG00000008042 RLG00000017998 RLG00000019187 RLG00000019483 RLG00000022446 RLG00000023139 RLG00000032380 RLG00000034989 RLG00000037076
rosa_multiflora	Rmu_co8397459.1_g000001 Rmu_sc0000195.1_g000037 Rmu_sc0000516.1_g000018 Rmu_sc0001091.1_g000004 Rmu_sc0001113.1_g000012 Rmu_sc0001673.1_g000033 Rmu_sc0001694.1_g000016 Rmu_sc0001793.1_g000051 Rmu_sc0002676.1_g000007 Rmu_sc0002986.1_g000020 Rmu_sc0004253.1_g000001 Rmu_sc0004478.1_g000012 Rmu_sc0004614.1_g000007 Rmu_sc0005387.1_g000002 Rmu_sc0006592.1_g000013 Rmu_sc0006967.1_g000011 Rmu_sc0011039.1_g000002 Rmu_sc0016880.1_g000004 Rmu_ssc0000182.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024880 Rroxscaffold_1G00053230 Rroxscaffold_1G00068810 Rroxscaffold_1G00068820 Rroxscaffold_2G00094300 Rroxscaffold_2G00095320 Rroxscaffold_2G00095330 Rroxscaffold_2G00108180 Rroxscaffold_2G00130520 Rroxscaffold_2G00131280 Rroxscaffold_3G00229800 Rroxscaffold_4G00279060 Rroxscaffold_4G00312500 Rroxscaffold_4G00312510 Rroxscaffold_7G00215840
rosa_samantha	Rh1BG408300 Rh3AG269100 Rh3CG198400 Rh3CG303300 Rh5AG056400 Rh5DG052900 Rh5DG388100 Rh7BG462700 Rh7CG506000
rosa_wichuraiana	Rw1G013080 Rw2G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	601
AccB1I	GGYRCC	2 cut(s)	564, 601
AccBSI	CCGCTC	1 cut(s)	457
AccII	CGCG	1 cut(s)	354
AciI	CCGC	8 cut(s)	319, 354, 424, 457, 460, 495, 498, 530
AclWI	GGATC	3 cut(s)	270, 283, 357
AcsI	RAATTY	3 cut(s)	167, 259, 412
AcuI	CTGAAG	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	1 cut(s)	603
AgsI	TTSAA	1 cut(s)	509
AlwI	GGATC	3 cut(s)	270, 283, 357
Ama87I	CYCGRG	2 cut(s)	378, 638
ApeKI	GCWGC	2 cut(s)	383, 532
ApoI	RAATTY	3 cut(s)	167, 259, 412
Asp718I	GGTACC	1 cut(s)	601
AspS9I	GGNCC	2 cut(s)	70, 635
AsuC2I	CCSGG	2 cut(s)	639, 640
AsuHPI	GGTGA	1 cut(s)	275
AvaI	CYCGRG	2 cut(s)	378, 638
AvaII	GGWCC	2 cut(s)	70, 635
BamHI	GGATCC	1 cut(s)	275
BanI	GGYRCC	2 cut(s)	564, 601
BanII	GRGCYC	1 cut(s)	379
BauI	CACGAG	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	395, 544
BccI	CCATC	5 cut(s)	25, 50, 340, 414, 590
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BcnI	CCSGG	2 cut(s)	639, 640
BfaI	CTAG	3 cut(s)	96, 447, 464
BfmI	CTRYAG	1 cut(s)	398
BglII	AGATCT	2 cut(s)	363, 622
BisI	GCNGC	7 cut(s)	320, 384, 458, 461, 496, 499, 533
BlsI	GCNGC	7 cut(s)	321, 385, 459, 462, 497, 500, 534
Bme1390I	CCNGG	2 cut(s)	639, 640
Bme18I	GGWCC	2 cut(s)	70, 635
BmeT110I	CYCGRG	2 cut(s)	378, 638
BmgT120I	GGNCC	2 cut(s)	70, 635
BmiI	GGNNCC	5 cut(s)	277, 566, 603, 636, 637
BmrFI	CCNGG	2 cut(s)	639, 640
BmsI	GCATC	2 cut(s)	118, 478
BpiI	GAAGAC	1 cut(s)	120
BpuMI	CCSGG	2 cut(s)	639, 640
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	638
BseGI	GGATG	2 cut(s)	253, 526
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	2 cut(s)	395, 544
BsgI	GTGCAG	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	530
BshNI	GGYRCC	2 cut(s)	564, 601
BsiEI	CGRYCG	1 cut(s)	530
BsiHKCI	CYCGRG	2 cut(s)	378, 638
BsiSI	CCGG	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	194
BsoBI	CYCGRG	2 cut(s)	378, 638
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	7 cut(s)	275, 349, 363, 472, 523, 586, 622
BspACI	CCGC	8 cut(s)	319, 354, 424, 457, 460, 495, 498, 530
BspCNI	CTCAG	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	5 cut(s)	277, 566, 603, 636, 637
BspPI	GGATC	3 cut(s)	270, 283, 357
BspT107I	GGYRCC	2 cut(s)	564, 601
BsrBI	CCGCTC	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	638
BssMI	GATC	7 cut(s)	275, 349, 363, 472, 523, 586, 622
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	607
Bst2BI	CACGAG	1 cut(s)	607
BstACI	GRCGYC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	1 cut(s)	555
BstF5I	GGATG	2 cut(s)	253, 526
BstFNI	CGCG	1 cut(s)	354
BstKTI	GATC	7 cut(s)	278, 352, 366, 475, 526, 589, 625
BstMBI	GATC	7 cut(s)	275, 349, 363, 472, 523, 586, 622
BstMCI	CGRYCG	1 cut(s)	530
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	637, 638
BstSFI	CTRYAG	1 cut(s)	398
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	395, 544
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	3 cut(s)	275, 363, 622
BstYI	RGATCY	3 cut(s)	275, 363, 622
BtsCI	GGATG	2 cut(s)	253, 526
BtsIMutI	CAGTG	2 cut(s)	552, 596
Cac8I	GCNNGC	1 cut(s)	493
Cfr13I	GGNCC	2 cut(s)	70, 635
Cfr9I	CCCGGG	1 cut(s)	638
CseI	GACGC	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	602
CviJI	RGCY	3 cut(s)	322, 377, 463
CviKI_1	RGCY	3 cut(s)	322, 377, 463
CviQI	GTAC	1 cut(s)	602
DdeI	CTNAG	1 cut(s)	555
DpnI	GATC	7 cut(s)	277, 351, 365, 474, 525, 588, 624
DpnII	GATC	7 cut(s)	275, 349, 363, 472, 523, 586, 622
EciI	GGCGGA	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	70, 635
Eco57I	CTGAAG	1 cut(s)	66
Eco88I	CYCGRG	2 cut(s)	378, 638
EcoO109I	RGGNCCY	1 cut(s)	635
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	379
FaiI	YATR	6 cut(s)	27, 36, 165, 203, 207, 617
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	7 cut(s)	320, 384, 458, 461, 496, 499, 533
FokI	GGATG	2 cut(s)	260, 533
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	7 cut(s)	320, 384, 458, 461, 496, 499, 533
FspBI	CTAG	3 cut(s)	96, 447, 464
GluI	GCNGC	7 cut(s)	320, 384, 458, 461, 496, 499, 533
HapII	CCGG	1 cut(s)	639
HgaI	GACGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	501
HinfI	GANTC	2 cut(s)	41, 557
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	46, 240
Hpy188III	TCNNGA	3 cut(s)	302, 470, 584
HpyAV	CCTTC	1 cut(s)	403
HpyCH4V	TGCA	3 cut(s)	131, 194, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	1 cut(s)	555
Hsp92I	GRCGYC	1 cut(s)	501
KflI	GGGWCCC	1 cut(s)	635
KpnI	GGTACC	1 cut(s)	605
Kzo9I	GATC	7 cut(s)	275, 349, 363, 472, 523, 586, 622
LpnPI	CCDG	7 cut(s)	386, 415, 477, 524, 546, 597, 611
Lsp1109I	GCAGC	2 cut(s)	395, 544
LweI	GCATC	2 cut(s)	118, 478
MaeI	CTAG	3 cut(s)	96, 447, 464
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	7 cut(s)	277, 351, 365, 474, 525, 588, 624
MbiI	CCGCTC	1 cut(s)	457
MboI	GATC	7 cut(s)	275, 349, 363, 472, 523, 586, 622
MboII	GAAGA	3 cut(s)	50, 125, 632
MflI	RGATCY	3 cut(s)	275, 363, 622
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	7 cut(s)	85, 100, 167, 218, 259, 412, 643
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	5 cut(s)	61, 266, 296, 347, 352
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	3 cut(s)	189, 225, 646
MslI	CAYNNNNRTG	1 cut(s)	509
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	2 cut(s)	639, 640
Mva1269I	GAATGC	1 cut(s)	194
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	2 cut(s)	639, 640
NdeII	GATC	7 cut(s)	275, 349, 363, 472, 523, 586, 622
NlaIV	GGNNCC	5 cut(s)	277, 566, 603, 636, 637
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	532
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	7 cut(s)	321, 385, 459, 462, 497, 500, 534
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PpuMI	RGGWCCY	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	635
PspN4I	GGNNCC	5 cut(s)	277, 566, 603, 636, 637
PspPI	GGNCC	2 cut(s)	70, 635
PspPPI	RGGWCCY	1 cut(s)	635
PsuI	RGATCY	3 cut(s)	275, 363, 622
RsaI	GTAC	1 cut(s)	603
RsaNI	GTAC	1 cut(s)	602
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	3 cut(s)	189, 225, 646
SatI	GCNGC	7 cut(s)	320, 384, 458, 461, 496, 499, 533
Sau3AI	GATC	7 cut(s)	275, 349, 363, 472, 523, 586, 622
Sau96I	GGNCC	2 cut(s)	70, 635
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	639, 640
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	3 cut(s)	72, 288, 469
SfaNI	GCATC	2 cut(s)	118, 478
SfcI	CTRYAG	1 cut(s)	398
SinI	GGWCC	2 cut(s)	70, 635
SmaI	CCCGGG	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	509
Sse9I	AATT	7 cut(s)	85, 100, 167, 218, 259, 412, 643
SsiI	CCGC	8 cut(s)	319, 354, 424, 457, 460, 495, 498, 530
SspI	AATATT	1 cut(s)	144
SspMI	CTAG	3 cut(s)	96, 447, 464
StyD4I	CCNGG	2 cut(s)	637, 638
TaqI	TCGA	4 cut(s)	20, 303, 418, 526
TasI	AATT	7 cut(s)	85, 100, 167, 218, 259, 412, 643
TauI	GCSGC	5 cut(s)	322, 460, 463, 498, 501
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	189, 225, 646
Tru9I	TTAA	3 cut(s)	189, 225, 646
TscAI	CASTG	2 cut(s)	559, 596
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	2 cut(s)	383, 532
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	51, 126, 187, 321
TspMI	CCCGGG	1 cut(s)	638
TspRI	CASTG	2 cut(s)	559, 596
VpaK11BI	GGWCC	2 cut(s)	70, 635
XapI	RAATTY	3 cut(s)	167, 259, 412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XmaI	CCCGGG	1 cut(s)	638
XspI	CTAG	3 cut(s)	96, 447, 464
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.