RLG00000022446

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001043
Physical Location & Seq
Forward (+)
83378653 .. 83381769
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022446

Sequence Viewer

Length: 990 bp
ATGGCAGAGGACATGGCCTCAAGGTTGGCTGCTGCTTTAGCCCTAACAGAGGATGCAGTGGTTAATTTCGGGATAGTAGGCTCGGTAGCAATAGCTGATGAATACTTCTACTTAATAGGTCGTCTGGTTCAGAGAAAAGAAAGTGATGACAAAGGAAAGGGTCTGGGGTCTCTGGACTCGAAGGCTTTGTTGGTGAATGGGATGTTGAAAAGAAAGAAATCTAAGGGAGAGGATAATTTTCCTCGAACTATACCGGGTCGCTCCTATGATATAACCCCTATTGCTAGCGCGGCTGTCCTTTTTGTGCAGCCAAGCAACTCTTTAAGTACTGTAGCTAAAGCTTCACTGGCCCTCATTTCGTTAATCAAAATGGTGGGATTTTCTTTATTTGATTTGCAGGCCATCCCTAGTTGGGAGCCACCAGCTGAAGGATCTACAACAATGAGCAAGTCTGTGGAGCTTGACACTCCTTTGGAGGTGGATGATGGCTTTGATTTACCAAATGAGAATGGGGTCAGTCGCATCTCTCCAACAAACAAGAGAGGAAGACTAAAAGAAAGCAAGAACAAATACAAGACCAAGGGACCTAAACCTAGGAGGACTAGGTTTCCTAAGGTAATTGGGGAAGCTGTGACTAGTGAGTTGGCTATGGTAGAGCATAAAAACGAACTTGCAGGTGAAACTGAAGATGTGATAGCTAAGGCTATGGAGGAGGTGTTTGAGGGAAATGACATTATGCTTTTAGTAAATCACCTGCCGAGCACCTGTCGACACCTGCCGAGACCTGCCGAGCATCTGCCGACACCTGCCGAGCACCTGCCGACACCTGCCGACACCTGCCGAGCATCTGCCGAGACCTGCCGACACCTGCCGAGCATCTGCCGAGACCTGCCGACACCTGCCGACACCTGCCGAGCACCTGCCGACACCTGCCCGACACCTGCCGAGCACCTGCCGACACCTGCCGAGCACCTGCCGATAGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

35.55

Weight (kDa)

5.96

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 769
AccII CGCG 1 cut(s) 290
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 439
AcuI CTGAAG 2 cut(s) 447, 705
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 3 cut(s) 49, 412, 428
AgsI TTSAA 1 cut(s) 208
AhlI ACTAGT 1 cut(s) 635
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 8 cut(s) 95, 335, 341, 425, 460, 629, 698, 983
AluI AGCT 8 cut(s) 95, 335, 341, 425, 460, 629, 698, 983
Alw21I GWGCWC 5 cut(s) 764, 816, 919, 951, 972
Alw26I GTCTC 4 cut(s) 174, 775, 848, 879
AlwI GGATC 1 cut(s) 439
AoxI GGCC 3 cut(s) 15, 348, 399
ApeKI GCWGC 4 cut(s) 29, 32, 307, 983
AspA2I CCTAGG 1 cut(s) 593
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 349, 584
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 205, 689, 743
AsuNHI GCTAGC 1 cut(s) 284
AvaII GGWCC 1 cut(s) 584
AvrII CCTAGG 1 cut(s) 593
AxyI CCTNAGG 1 cut(s) 612
BbsI GAAGAC 1 cut(s) 553
Bbv12I GWGCWC 5 cut(s) 764, 816, 919, 951, 972
BbvI GCAGC 4 cut(s) 16, 19, 319, 970
BccI CCATC 2 cut(s) 410, 479
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 4 cut(s) 174, 775, 848, 879
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 6 cut(s) 285, 408, 594, 603, 636, 988
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 5 cut(s) 30, 33, 291, 308, 984
BlnI CCTAGG 1 cut(s) 593
BlsI GCNGC 5 cut(s) 31, 34, 292, 309, 985
BmcAI AGTACT 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 349, 584
BmiI GGNNCC 2 cut(s) 417, 585
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 5 cut(s) 43, 531, 802, 854, 885
BmtI GCTAGC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 553
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 4
BpuMI CCSGG 1 cut(s) 255
BsaI GGTCTC 4 cut(s) 174, 775, 848, 879
BsaJI CCNNGG 2 cut(s) 579, 593
BsaXI ACNNNNNCTCC 2 cut(s) 701, 731
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 412, 428
Bse1I ACTGG 1 cut(s) 351
Bse21I CCTNAGG 1 cut(s) 612
BseDI CCNNGG 2 cut(s) 579, 593
BseGI GGATG 4 cut(s) 58, 207, 402, 487
BseLI CCNNNNNNNGG 3 cut(s) 49, 412, 428
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 725
BseXI GCAGC 4 cut(s) 16, 19, 319, 970
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 3 cut(s) 17, 350, 401
BsiHKAI GWGCWC 5 cut(s) 764, 816, 919, 951, 972
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 3 cut(s) 49, 412, 428
BsmAI GTCTC 4 cut(s) 174, 775, 848, 879
BsmFI GGGAC 1 cut(s) 597
BsnI GGCC 3 cut(s) 17, 350, 401
Bso31I GGTCTC 4 cut(s) 174, 775, 848, 879
Bsp1286I GDGCHC 5 cut(s) 764, 816, 919, 951, 972
Bsp143I GATC 1 cut(s) 431
BspACI CCGC 1 cut(s) 290
BspANI GGCC 3 cut(s) 17, 350, 401
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 2 cut(s) 417, 585
BspOI GCTAGC 1 cut(s) 288
BspPI GGATC 1 cut(s) 439
BspTNI GGTCTC 4 cut(s) 174, 775, 848, 879
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 2 cut(s) 579, 593
BssMI GATC 1 cut(s) 431
BssT1I CCWWGG 2 cut(s) 579, 593
Bst4CI ACNGT 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 286, 399
BstDEI CTNAG 3 cut(s) 222, 612, 699
BstENI CCTNNNNNAGG 1 cut(s) 47
BstF5I GGATG 4 cut(s) 58, 207, 402, 487
BstFNI CGCG 1 cut(s) 290
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 1 cut(s) 434
BstMAI GTCTC 4 cut(s) 174, 775, 848, 879
BstMBI GATC 1 cut(s) 431
BstMWI GCNNNNNNNGC 3 cut(s) 38, 290, 347
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 4 cut(s) 16, 19, 319, 970
BstV2I GAAGAC 1 cut(s) 553
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
Bsu36I CCTNAGG 1 cut(s) 612
BsuRI GGCC 3 cut(s) 17, 350, 401
BtsCI GGATG 4 cut(s) 58, 207, 402, 487
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 344
Cac8I GCNNGC 2 cut(s) 286, 399
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 349, 584
Csp6I GTAC 1 cut(s) 327
CviAII CATG 1 cut(s) 13
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 3 cut(s) 222, 612, 699
DpnI GATC 1 cut(s) 433
DpnII GATC 1 cut(s) 431
Eco130I CCWWGG 2 cut(s) 579, 593
Eco31I GGTCTC 4 cut(s) 174, 775, 848, 879
Eco47I GGWCC 1 cut(s) 584
Eco57I CTGAAG 2 cut(s) 447, 705
Eco81I CCTNAGG 1 cut(s) 612
EcoNI CCTNNNNNAGG 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 584
EcoT14I CCWWGG 2 cut(s) 579, 593
ErhI CCWWGG 2 cut(s) 579, 593
FaeI CATG 1 cut(s) 16
FaiI YATR 8 cut(s) 14, 251, 267, 272, 650, 660, 707, 737
FalI AAGNNNNNCTT 2 cut(s) 304, 336
FaqI GGGAC 1 cut(s) 597
FatI CATG 1 cut(s) 12
FblI GTMKAC 1 cut(s) 769
Fnu4HI GCNGC 5 cut(s) 30, 33, 291, 308, 984
FokI GGATG 4 cut(s) 65, 214, 389, 494
Fsp4HI GCNGC 5 cut(s) 30, 33, 291, 308, 984
FspBI CTAG 6 cut(s) 285, 408, 594, 603, 636, 988
GlaI GCGC 1 cut(s) 289
GluI GCNGC 5 cut(s) 30, 33, 291, 308, 984
HaeIII GGCC 3 cut(s) 17, 350, 401
HapII CCGG 1 cut(s) 254
HhaI GCGC 1 cut(s) 290
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 1 cut(s) 770
HindII GTYRAC 1 cut(s) 770
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 254
HphI GGTGA 3 cut(s) 205, 689, 743
Hpy166II GTNNAC 1 cut(s) 770
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 70, 173
Hpy8I GTNNAC 1 cut(s) 770
HpyAV CCTTC 2 cut(s) 175, 422
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 4 cut(s) 56, 307, 397, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 290, 347
HpyF3I CTNAG 3 cut(s) 222, 612, 699
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 1 cut(s) 288
Kzo9I GATC 1 cut(s) 431
LmnI GCTCC 3 cut(s) 266, 415, 457
Lsp1109I GCAGC 4 cut(s) 16, 19, 319, 970
LweI GCATC 5 cut(s) 43, 531, 802, 854, 885
MaeI CTAG 6 cut(s) 285, 408, 594, 603, 636, 988
MaeIII GTNAC 1 cut(s) 631
MalI GATC 1 cut(s) 433
MboI GATC 1 cut(s) 431
MboII GAAGA 2 cut(s) 558, 698
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 5 cut(s) 764, 816, 919, 951, 972
MluCI AATT 3 cut(s) 64, 235, 618
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 554
MseI TTAA 4 cut(s) 63, 113, 323, 362
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 255
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 3 cut(s) 38, 290, 347
NciI CCSGG 1 cut(s) 255
NdeII GATC 1 cut(s) 431
NheI GCTAGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 417, 585
NmuCI GTSAC 1 cut(s) 631
PkrI GCNGC 5 cut(s) 31, 34, 292, 309, 985
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 584
Psp5II RGGWCCY 1 cut(s) 584
PspN4I GGNNCC 2 cut(s) 417, 585
PspPI GGNCC 2 cut(s) 349, 584
PspPPI RGGWCCY 1 cut(s) 584
PsuI RGATCY 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SalI GTCGAC 1 cut(s) 768
SaqAI TTAA 4 cut(s) 63, 113, 323, 362
SatI GCNGC 5 cut(s) 30, 33, 291, 308, 984
Sau3AI GATC 1 cut(s) 431
Sau96I GGNCC 2 cut(s) 349, 584
ScaI AGTACT 1 cut(s) 328
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 5 cut(s) 764, 816, 919, 951, 972
SfaNI GCATC 5 cut(s) 43, 531, 802, 854, 885
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
SpeI ACTAGT 1 cut(s) 635
Sse9I AATT 3 cut(s) 64, 235, 618
SsiI CCGC 1 cut(s) 290
SspMI CTAG 6 cut(s) 285, 408, 594, 603, 636, 988
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 2 cut(s) 579, 593
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 3 cut(s) 179, 244, 769
TasI AATT 3 cut(s) 64, 235, 618
TatI WGTACW 1 cut(s) 326
TauI GCSGC 1 cut(s) 293
Tru1I TTAA 4 cut(s) 63, 113, 323, 362
Tru9I TTAA 4 cut(s) 63, 113, 323, 362
TscAI CASTG 2 cut(s) 63, 351
TseFI GTSAC 1 cut(s) 631
TseI GCWGC 4 cut(s) 29, 32, 307, 983
Tsp45I GTSAC 1 cut(s) 631
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 2 cut(s) 63, 351
VpaK11BI GGWCC 1 cut(s) 584
XagI CCTNNNNNAGG 1 cut(s) 47
XmaJI CCTAGG 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 769
XspI CTAG 6 cut(s) 285, 408, 594, 603, 636, 988
ZrmI AGTACT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.