Rmu_sc0001673.1_g000033

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001673.1
OG0001043
Physical Location & Seq
Forward (+)
167190 .. 167447
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001673.1_g000033.1.cds

Sequence Viewer

Length: 258 bp
atggctcgaagcaagcttgatcggggaggttttcgaatggagggtcattataagaatgacatggaggaaatcaagatgaggatccaacaacttgcagaacatattaatcgcatcgaaactcgatgccaaggaggtaagagttgcgatgggaaaagagacgtttatcaacatgtcacttgcactgaagcctcatgccaagatggtgaaggtttagacagggagtgttggcccttttcatcactgtgctctgttgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.76

Weight (kDa)

6.27

Isoelectric Point (pI)

68.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
AclWI GGATC 2 cut(s) 76, 89
AcuI CTGAAG 1 cut(s) 204
AflIII ACRYGT 1 cut(s) 169
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw21I GWGCWC 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 2 cut(s) 76, 89
AoxI GGCC 1 cut(s) 227
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AseI ATTAAT 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 215
AsuII TTCGAA 1 cut(s) 34
BamHI GGATCC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 248
BccI CCATC 2 cut(s) 140, 194
BcoDI GTCTC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 83
BmsI GCATC 2 cut(s) 113, 120
Bpu14I TTCGAA 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 127
Bse8I GATNNNNATC 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 127
BseJI GATNNNNATC 1 cut(s) 80
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 229
Bsp119I TTCGAA 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 19, 81
BspANI GGCC 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 2 cut(s) 76, 89
BspT104I TTCGAA 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 19, 81
BssT1I CCWWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 243
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 14
BstKTI GATC 2 cut(s) 22, 84
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 19, 81
BstNSI RCATGY 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 180, 239
Cac8I GCNNGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 228
CviAII CATG 3 cut(s) 61, 170, 192
CviJI RGCY 4 cut(s) 5, 16, 188, 229
CviKI_1 RGCY 4 cut(s) 5, 16, 188, 229
DpnI GATC 2 cut(s) 21, 83
DpnII GATC 2 cut(s) 19, 81
Eco130I CCWWGG 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 3 cut(s) 64, 173, 195
FaiI YATR 5 cut(s) 51, 62, 102, 171, 193
FatI CATG 3 cut(s) 60, 169, 191
HaeIII GGCC 1 cut(s) 229
Hin1II CATG 3 cut(s) 64, 173, 195
HindIII AAGCTT 1 cut(s) 14
HphI GGTGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 2 cut(s) 95, 180
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 3 cut(s) 64, 173, 195
Kzo9I GATC 2 cut(s) 19, 81
LpnPI CCDG 1 cut(s) 202
LweI GCATC 2 cut(s) 113, 120
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 21, 83
MboI GATC 2 cut(s) 19, 81
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 6 cut(s) 20, 34, 58, 72, 125, 199
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 241
NdeII GATC 2 cut(s) 19, 81
NlaIII CATG 3 cut(s) 64, 173, 195
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 34
PciI ACATGT 1 cut(s) 169
PscI ACATGT 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 105
PsiI TTATAA 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 2 cut(s) 19, 81
Sau96I GGNCC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 248
SetI ASST 5 cut(s) 18, 31, 136, 162, 211
SfaNI GCATC 2 cut(s) 113, 120
SfuI TTCGAA 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 1 cut(s) 162
TaqI TCGA 4 cut(s) 7, 34, 114, 121
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 187, 246
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 2 cut(s) 187, 246
VspI ATTAAT 1 cut(s) 105
XceI RCATGY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.