Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001113.1

Orthogroup ID

OG0001043

Physical Location & Seq

Genomic Coordinates Forward (+)

49998 .. 52057

Gene Structure 2060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001113.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggaagccatcagacttgaggcgttcgaccggtatgaactagcagctaccgtcggaaaactgggcggtagcagagaatggccgaactgtgaactgggctatgggctacaacgaactggtctgtgggttggtctgagacgagcgacagcggtcttggagacgagcgacagcggtcttggagacgagcgacagcgagcccggattctgtttggggggattgatagacggtttccatggctaacagacgtggtaggggagggggtacttgacaataccaacgacatggaggaaatcaaggggttgattgaacaacttagtgaacgccttgctcgcatcgaaactcaaggcagtgatgatggtgagacttccgacggggaggagagtgttcattctcatggtgatagcctgataggaggcatggtaataaccatgatcaccattctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.27

Weight (kDa)

4.53

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07634
prunus_persica	Prupe.1G102800_v2.0.a1 Prupe.8G086900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0246931
rosa_laevigata	RLG00000003129 RLG00000005865 RLG00000005867 RLG00000008042 RLG00000017998 RLG00000019187 RLG00000019483 RLG00000022446 RLG00000023139 RLG00000032380 RLG00000034989 RLG00000037076
rosa_multiflora	Rmu_co8397459.1_g000001 Rmu_sc0000195.1_g000037 Rmu_sc0000516.1_g000018 Rmu_sc0001091.1_g000004 Rmu_sc0001113.1_g000012 Rmu_sc0001673.1_g000033 Rmu_sc0001694.1_g000016 Rmu_sc0001793.1_g000051 Rmu_sc0002676.1_g000007 Rmu_sc0002986.1_g000020 Rmu_sc0004253.1_g000001 Rmu_sc0004478.1_g000012 Rmu_sc0004614.1_g000007 Rmu_sc0005387.1_g000002 Rmu_sc0006592.1_g000013 Rmu_sc0006967.1_g000011 Rmu_sc0011039.1_g000002 Rmu_sc0016880.1_g000004 Rmu_ssc0000182.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024880 Rroxscaffold_1G00053230 Rroxscaffold_1G00068810 Rroxscaffold_1G00068820 Rroxscaffold_2G00094300 Rroxscaffold_2G00095320 Rroxscaffold_2G00095330 Rroxscaffold_2G00108180 Rroxscaffold_2G00130520 Rroxscaffold_2G00131280 Rroxscaffold_3G00229800 Rroxscaffold_4G00279060 Rroxscaffold_4G00312500 Rroxscaffold_4G00312510 Rroxscaffold_7G00215840
rosa_samantha	Rh1BG408300 Rh3AG269100 Rh3CG198400 Rh3CG303300 Rh5AG056400 Rh5DG052900 Rh5DG388100 Rh7BG462700 Rh7CG506000
rosa_wichuraiana	Rw1G013080 Rw2G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	66, 149, 171
AcoI	YGGCCR	1 cut(s)	80
AfaI	GTAC	1 cut(s)	264
AgeI	ACCGGT	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	308
AjiI	CACGTC	1 cut(s)	247
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw26I	GTCTC	4 cut(s)	130, 152, 174, 356
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	44
AsiGI	ACCGGT	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	3 cut(s)	371, 410, 427
BanII	GRGCYC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	17, 350
BclI	TGATCA	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	4 cut(s)	130, 152, 174, 356
BfaI	CTAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	199
BmgBI	CACGTC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	199
BmrI	ACTGGG	2 cut(s)	71, 104
BmsI	GCATC	1 cut(s)	342
BmuI	ACTGGG	2 cut(s)	71, 104
BoxI	GACNNNNGTC	2 cut(s)	149, 171
BpuEI	CTTGAG	2 cut(s)	38, 327
BpuMI	CCSGG	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	3 cut(s)	66, 99, 121
BseDI	CCNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	3 cut(s)	66, 99, 121
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	31, 199
BsmAI	GTCTC	4 cut(s)	130, 152, 174, 356
BsmBI	CGTCTC	3 cut(s)	130, 152, 174
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	432
Bsp19I	CCATGG	1 cut(s)	233
BspACI	CCGC	3 cut(s)	66, 149, 171
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	3 cut(s)	66, 99, 121
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	233
Bst4CI	ACNGT	3 cut(s)	52, 89, 228
BstC8I	GCNNGC	2 cut(s)	195, 331
BstDEI	CTNAG	2 cut(s)	134, 314
BstDSI	CCRYGG	1 cut(s)	233
BstKTI	GATC	1 cut(s)	435
BstMAI	GTCTC	4 cut(s)	130, 152, 174, 356
BstMBI	GATC	1 cut(s)	432
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstPAI	GACNNNNGTC	2 cut(s)	149, 171
BstSCI	CCNGG	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	233
BtrI	CACGTC	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	195, 331
Cfr10I	RCCGGY	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	263
CspAI	ACCGGT	1 cut(s)	30
CviAII	CATG	5 cut(s)	234, 283, 395, 418, 430
CviJI	RGCY	8 cut(s)	8, 47, 82, 99, 106, 197, 238, 405
CviKI_1	RGCY	8 cut(s)	8, 47, 82, 99, 106, 197, 238, 405
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	2 cut(s)	134, 314
DpnI	GATC	1 cut(s)	434
DpnII	GATC	1 cut(s)	432
EaeI	YGGCCR	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	233
Esp3I	CGTCTC	3 cut(s)	130, 152, 174
FaeI	CATG	5 cut(s)	237, 286, 398, 421, 433
FaiI	YATR	7 cut(s)	36, 102, 235, 284, 396, 419, 431
FatI	CATG	5 cut(s)	233, 282, 394, 417, 429
FbaI	TGATCA	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	31, 199
Hin1II	CATG	5 cut(s)	237, 286, 398, 421, 433
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	31, 199
HphI	GGTGA	3 cut(s)	371, 410, 427
Hpy166II	GTNNAC	2 cut(s)	92, 320
Hpy188I	TCNGA	4 cut(s)	14, 56, 135, 370
Hpy8I	GTNNAC	2 cut(s)	92, 320
Hpy99I	CGWCG	2 cut(s)	56, 374
HpyCH4III	ACNGT	3 cut(s)	52, 89, 228
HpyCH4IV	ACGT	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	2 cut(s)	134, 314
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	237, 286, 398, 421, 433
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	1 cut(s)	432
LpnPI	CCDG	6 cut(s)	44, 47, 80, 102, 212, 419
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	246
MalI	GATC	1 cut(s)	434
MboI	GATC	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	199
MmeI	TCCRAC	2 cut(s)	34, 393
MnlI	CCTC	5 cut(s)	13, 250, 280, 370, 407
MseI	TTAA	1 cut(s)	445
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	149, 171
MspI	CCGG	2 cut(s)	31, 199
MspR9I	CCNGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	330
NciI	CCSGG	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	233
NdeII	GATC	1 cut(s)	432
NlaIII	CATG	5 cut(s)	237, 286, 398, 421, 433
PfeI	GAWTC	1 cut(s)	202
PinAI	ACCGGT	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	46
PshAI	GACNNNNGTC	2 cut(s)	149, 171
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	445
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	2 cut(s)	49, 249
SfaNI	GCATC	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	17, 342
SmoI	CTYRAG	2 cut(s)	17, 342
SsiI	CCGC	3 cut(s)	66, 149, 171
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	3 cut(s)	52, 89, 228
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	27, 336
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	445
Tru9I	TTAA	1 cut(s)	445
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	51, 377
TspRI	CASTG	1 cut(s)	355
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.