Rroxscaffold_1G00024880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001043
Physical Location & Seq
Reverse (-)
30958214 .. 30960956
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024880.1

Sequence Viewer

Length: 609 bp
ATGGTGGGATTTTCTTTATCCGATTTGCAAGCCATCCCCGAGTTGGGAGCTATTAGCGAGAGGCTTTACAATGATGGCCGAAAAAGGGCTAAGCTAGATAACATGCAGATTGACATGCCATTGGAGGTGGATGATGGCTTTGGTTTACCAAATGAGAATGGGGTGATTCGCATCTCTCCAATAAAGAAGAGAGAAACACTAAAAGGATGCAAGAACAAATACAAGACCAAGGGGCCTAAACCTAGGAGGACTAGGTTTCCTAAGGTAATTGGGGAAGTTGTGATTAATGAAGAGATAGCTATTGTTGAGCTTGCAAATGAAGCTGCAGGTCTAAGTTTTAGGACCCGTAACCCATCAATTTGGTATCGGATTTTTGGTGAAAGCGTGGTGGATTCCATGGCTCGAAGCAAGCTTGATCGGGGAGGTTTTCGAATGGAGGGTCATTATAACAATGACATGGAGGAAATCAAGATGATGATCCAACAACTTGCGAACGTATCAATCGCATTGAAACTCGACGCTAAGGAGGTAAGAGTTGCAATGGGGAAAGAGACGTTTATCAACGTGTCACTTGCACCGAAACCTCATGCCAAGATGGTGAAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.73

Weight (kDa)

9.56

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
Acc36I ACCTGC 1 cut(s) 317
AclWI GGATC 1 cut(s) 472
AcoI YGGCCR 1 cut(s) 76
AfiI CCNNNNNNNGG 3 cut(s) 43, 44, 85
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 1 cut(s) 511
AluBI AGCT 6 cut(s) 50, 94, 299, 310, 323, 412
AluI AGCT 6 cut(s) 50, 94, 299, 310, 323, 412
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 1 cut(s) 472
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 2 cut(s) 76, 233
ApeKI GCWGC 1 cut(s) 323
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
AseI ATTAAT 1 cut(s) 285
AspA2I CCTAGG 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 233, 342
AsuHPI GGTGA 2 cut(s) 175, 389
AsuII TTCGAA 1 cut(s) 430
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 342
AvrII CCTAGG 1 cut(s) 242
AxyI CCTNAGG 1 cut(s) 261
BbvI GCAGC 1 cut(s) 310
BccI CCATC 5 cut(s) 41, 68, 128, 361, 589
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 3 cut(s) 95, 243, 252
BfmI CTRYAG 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 1 cut(s) 324
BlnI CCTAGG 1 cut(s) 242
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 233, 342
BmiI GGNNCC 2 cut(s) 234, 344
BmsI GCATC 2 cut(s) 180, 197
Bpu10I CCTNAGC 1 cut(s) 522
Bpu1102I GCTNAGC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 430
BsaBI GATNNNNATC 2 cut(s) 170, 476
BsaJI CCNNGG 3 cut(s) 228, 242, 396
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 44, 85
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 2 cut(s) 170, 476
BseDI CCNNGG 3 cut(s) 228, 242, 396
BseGI GGATG 3 cut(s) 33, 136, 212
BseJI GATNNNNATC 2 cut(s) 170, 476
BseLI CCNNNNNNNGG 3 cut(s) 43, 44, 85
BseMI GCAATG 1 cut(s) 546
BseXI GCAGC 1 cut(s) 310
BshFI GGCC 2 cut(s) 78, 235
BsiHKCI CYCGRG 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 43, 44, 85
BsmAI GTCTC 1 cut(s) 545
BsmBI CGTCTC 1 cut(s) 545
BsnI GGCC 2 cut(s) 78, 235
BsoBI CYCGRG 1 cut(s) 38
Bsp119I TTCGAA 1 cut(s) 430
Bsp143I GATC 2 cut(s) 415, 477
Bsp1720I GCTNAGC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 396
BspANI GGCC 2 cut(s) 78, 235
BspLI GGNNCC 2 cut(s) 234, 344
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 317
BspPI GGATC 1 cut(s) 472
BspT104I TTCGAA 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 546
BssECI CCNNGG 3 cut(s) 228, 242, 396
BssMI GATC 2 cut(s) 415, 477
BssT1I CCWWGG 3 cut(s) 228, 242, 396
Bst6I CTCTTC 2 cut(s) 182, 285
BstBI TTCGAA 1 cut(s) 430
BstC8I GCNNGC 3 cut(s) 30, 312, 410
BstDEI CTNAG 4 cut(s) 90, 261, 332, 522
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 3 cut(s) 33, 136, 212
BstKTI GATC 2 cut(s) 418, 480
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 2 cut(s) 415, 477
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNSI RCATGY 2 cut(s) 106, 118
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 360
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 2 cut(s) 78, 235
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 3 cut(s) 33, 136, 212
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 3 cut(s) 30, 312, 410
Cfr13I GGNCC 2 cut(s) 233, 342
CseI GACGC 1 cut(s) 527
CviAII CATG 5 cut(s) 103, 115, 397, 457, 587
DdeI CTNAG 4 cut(s) 90, 261, 332, 522
DpnI GATC 2 cut(s) 417, 479
DpnII GATC 2 cut(s) 415, 477
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 182, 285
EarI CTCTTC 2 cut(s) 182, 285
Eco130I CCWWGG 3 cut(s) 228, 242, 396
Eco47I GGWCC 1 cut(s) 342
Eco81I CCTNAGG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 38
EcoO109I RGGNCCY 2 cut(s) 233, 342
EcoT14I CCWWGG 3 cut(s) 228, 242, 396
ErhI CCWWGG 3 cut(s) 228, 242, 396
Esp3I CGTCTC 1 cut(s) 545
FaeI CATG 5 cut(s) 106, 118, 400, 460, 590
FaiI YATR 6 cut(s) 104, 116, 398, 447, 458, 588
FatI CATG 5 cut(s) 102, 114, 396, 456, 586
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 3 cut(s) 20, 143, 219
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 3 cut(s) 95, 243, 252
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 2 cut(s) 78, 235
HgaI GACGC 1 cut(s) 527
Hin1II CATG 5 cut(s) 106, 118, 400, 460, 590
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 2 cut(s) 166, 392
HphI GGTGA 2 cut(s) 175, 389
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 22, 369
Hpy188III TCNNGA 1 cut(s) 469
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 1 cut(s) 595
HpyCH4IV ACGT 3 cut(s) 495, 554, 564
HpyCH4V TGCA 7 cut(s) 28, 106, 210, 314, 326, 539, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 4 cut(s) 90, 261, 332, 522
HpySE526I ACGT 3 cut(s) 495, 554, 564
Hsp92II CATG 5 cut(s) 106, 118, 400, 460, 590
Kzo9I GATC 2 cut(s) 415, 477
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 1 cut(s) 312
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 2 cut(s) 180, 197
MaeI CTAG 3 cut(s) 95, 243, 252
MaeII ACGT 3 cut(s) 495, 554, 564
MaeIII GTNAC 2 cut(s) 347, 567
MalI GATC 2 cut(s) 417, 479
MboI GATC 2 cut(s) 415, 477
MboII GAAGA 2 cut(s) 199, 302
MluCI AATT 2 cut(s) 267, 357
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 8 cut(s) 54, 118, 240, 416, 430, 454, 520, 594
MseI TTAA 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 320
NcoI CCATGG 1 cut(s) 396
NdeII GATC 2 cut(s) 415, 477
NlaIII CATG 5 cut(s) 106, 118, 400, 460, 590
NlaIV GGNNCC 2 cut(s) 234, 344
NmuCI GTSAC 1 cut(s) 567
NspI RCATGY 2 cut(s) 106, 118
NspV TTCGAA 1 cut(s) 430
PfeI GAWTC 2 cut(s) 166, 392
PkrI GCNGC 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 342
PshBI ATTAAT 1 cut(s) 285
PsiI TTATAA 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 342
PspN4I GGNNCC 2 cut(s) 234, 344
PspPI GGNCC 2 cut(s) 233, 342
PspPPI RGGWCCY 1 cut(s) 342
PstI CTGCAG 1 cut(s) 328
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 2 cut(s) 415, 477
Sau96I GGNCC 2 cut(s) 233, 342
SfaNI GCATC 2 cut(s) 180, 197
SfcI CTRYAG 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 430
SinI GGWCC 1 cut(s) 342
Sse9I AATT 2 cut(s) 267, 357
SspMI CTAG 3 cut(s) 95, 243, 252
StyI CCWWGG 3 cut(s) 228, 242, 396
TaiI ACGT 3 cut(s) 498, 557, 567
TaqI TCGA 3 cut(s) 403, 430, 516
TasI AATT 2 cut(s) 267, 357
TfiI GAWTC 2 cut(s) 166, 392
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 567
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 567
TspDTI ATGAA 2 cut(s) 303, 333
VpaK11BI GGWCC 1 cut(s) 342
VspI ATTAAT 1 cut(s) 285
XceI RCATGY 2 cut(s) 106, 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmaJI CCTAGG 1 cut(s) 242
XspI CTAG 3 cut(s) 95, 243, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.