Rmu_sc0004478.1_g000012

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004478.1
OG0001043
Physical Location & Seq
Forward (+)
27016 .. 28689
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004478.1_g000012.1.cds

Sequence Viewer

Length: 750 bp
atggtgaagaagttgatggagggggaggaggggcaggtggtgaggaagaaggtgaaggaggttggtgaggtggcgaggaaggctgtggaggagggcaggtcctcgtggcggacgttggggttgctcattgatgagagctttggcaagagcttggtggattctatgtctcaggtctggcgaagaaggggaggttttcgaatggaagatcgtgacatcaacaacgacatggctgaaatcaaaatgatgcttcagcaacttgcggaacgtattgatcgtatcgaagctcgacgacggagtcgtaagagttccgacagggagagagacgttacgacctatcatcaacgtgttgattgcatcgaaactttctaccaagatggtgacggttccgacggggagatatgcgttggcccaattcataattgtgttcctttgtttgagtcaaatgaagagggacatagtactttcaattattccggttattctgaagtttgtgatggtggtgtggagcaccaaaggaaaaatgaatttgttcctagaaattgtgatgatgaagacgacaataaagccgcaatcaagtcaatattgtggaaagatattgagcataaatttgttgattttgttggagttaatgcattcattatgcatattcccaaagaattagttaatcttgtcactcagataaaaaatggtgagaaaaattttgggattgcgaagttaatgtcggagagaaaattatggggtcaaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

249

Amino Acids

28.66

Weight (kDa)

5.8

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 25
AasI GACNNNNNNGTC 1 cut(s) 294
Acc36I ACCTGC 2 cut(s) 25, 87
AciI CCGC 3 cut(s) 109, 260, 567
AcsI RAATTY 3 cut(s) 524, 605, 697
AcuI CTGAAG 2 cut(s) 233, 504
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 1 cut(s) 466
AluBI AGCT 3 cut(s) 138, 150, 284
AluI AGCT 3 cut(s) 138, 150, 284
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 2 cut(s) 171, 315
AoxI GGCC 1 cut(s) 406
ApoI RAATTY 3 cut(s) 524, 605, 697
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
Asp700I GAANNNNTTC 1 cut(s) 528
AspS9I GGNCC 2 cut(s) 99, 407
AsuHPI GGTGA 6 cut(s) 16, 52, 64, 77, 389, 701
AsuII TTCGAA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 99
BauI CACGAG 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 510
BccI CCATC 3 cut(s) 10, 368, 488
BcoDI GTCTC 2 cut(s) 171, 315
BfaI CTAG 1 cut(s) 534
BfuAI ACCTGC 2 cut(s) 25, 87
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
BmcAI AGTACT 1 cut(s) 460
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 2 cut(s) 99, 407
BmiI GGNNCC 1 cut(s) 385
BmsI GCATC 2 cut(s) 234, 363
BpiI GAAGAC 1 cut(s) 558
Bpu14I TTCGAA 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 473
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 2 cut(s) 182, 689
BseRI GAGGAG 2 cut(s) 41, 104
BshFI GGCC 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 510
BsiSI CCGG 1 cut(s) 474
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 2 cut(s) 171, 315
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 465
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 1 cut(s) 408
Bsp119I TTCGAA 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 2 cut(s) 205, 271
BspACI CCGC 3 cut(s) 109, 260, 567
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 2 cut(s) 181, 688
BspLI GGNNCC 1 cut(s) 385
BspMI ACCTGC 2 cut(s) 25, 87
BspT104I TTCGAA 1 cut(s) 196
BssMI GATC 2 cut(s) 205, 271
BssSI CACGAG 1 cut(s) 103
Bst2BI CACGAG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 196
BstDEI CTNAG 2 cut(s) 168, 675
BstKTI GATC 2 cut(s) 208, 274
BstMAI GTCTC 2 cut(s) 171, 315
BstMBI GATC 2 cut(s) 205, 271
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 558
BsuRI GGCC 1 cut(s) 408
BveI ACCTGC 2 cut(s) 25, 87
Cfr13I GGNCC 2 cut(s) 99, 407
Csp6I GTAC 1 cut(s) 459
CviAII CATG 1 cut(s) 226
CviJI RGCY 7 cut(s) 83, 138, 150, 230, 284, 408, 566
CviKI_1 RGCY 7 cut(s) 83, 138, 150, 230, 284, 408, 566
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 2 cut(s) 168, 675
DpnI GATC 2 cut(s) 207, 273
DpnII GATC 2 cut(s) 205, 271
DrdI GACNNNNNNGTC 1 cut(s) 294
DseDI GACNNNNNNGTC 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
EciI GGCGGA 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 233, 504
EcoO109I RGGNCCY 1 cut(s) 99
EcoT22I ATGCAT 2 cut(s) 634, 645
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 1 cut(s) 229
FaiI YATR 9 cut(s) 164, 227, 400, 417, 456, 603, 641, 645, 736
FaqI GGGAC 1 cut(s) 465
FatI CATG 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 567
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 1 cut(s) 534
GluI GCNGC 1 cut(s) 567
HaeIII GGCC 1 cut(s) 408
HapII CCGG 1 cut(s) 474
Hin1II CATG 1 cut(s) 229
HinfI GANTC 3 cut(s) 158, 295, 437
HpaII CCGG 1 cut(s) 474
HphI GGTGA 6 cut(s) 16, 52, 64, 77, 389, 701
Hpy188I TCNGA 5 cut(s) 310, 388, 484, 678, 724
Hpy188III TCNNGA 1 cut(s) 209
Hpy99I CGWCG 3 cut(s) 291, 294, 392
HpyAV CCTTC 4 cut(s) 43, 49, 73, 177
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 4 cut(s) 113, 265, 324, 343
HpyCH4V TGCA 3 cut(s) 354, 632, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 2 cut(s) 168, 675
HpySE526I ACGT 4 cut(s) 113, 265, 324, 343
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 2 cut(s) 205, 271
LmnI GCTCC 1 cut(s) 505
LpnPI CCDG 6 cut(s) 20, 82, 155, 160, 298, 487
LweI GCATC 2 cut(s) 234, 363
MaeI CTAG 1 cut(s) 534
MaeII ACGT 4 cut(s) 113, 265, 324, 343
MaeIII GTNAC 4 cut(s) 209, 325, 377, 670
MalI GATC 2 cut(s) 207, 273
MboI GATC 2 cut(s) 205, 271
MboII GAAGA 6 cut(s) 19, 58, 192, 215, 458, 563
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 9 cut(s) 411, 418, 466, 524, 538, 605, 656, 697, 731
MlyI GAGTC 2 cut(s) 304, 446
MmeI TCCRAC 4 cut(s) 333, 411, 601, 702
Mph1103I ATGCAT 2 cut(s) 634, 645
MroXI GAANNNNTTC 1 cut(s) 528
MseI TTAA 4 cut(s) 627, 663, 716, 748
MslI CAYNNNNRTG 2 cut(s) 342, 420
MspI CCGG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 632
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 2 cut(s) 205, 271
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 385
NmuCI GTSAC 3 cut(s) 209, 377, 670
NsiI ATGCAT 2 cut(s) 634, 645
NspV TTCGAA 1 cut(s) 196
PaqCI CACCTGC 1 cut(s) 25
PcsI WCGNNNNNNNCGW 3 cut(s) 110, 271, 295
PctI GAATGC 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 294
PkrI GCNGC 1 cut(s) 568
PleI GAGTC 2 cut(s) 303, 445
PpsI GAGTC 2 cut(s) 303, 445
PpuMI RGGWCCY 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 385
PspPI GGNCC 2 cut(s) 99, 407
PspPPI RGGWCCY 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 294
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 2 cut(s) 342, 420
SaqAI TTAA 4 cut(s) 627, 663, 716, 748
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 2 cut(s) 205, 271
Sau96I GGNCC 2 cut(s) 99, 407
ScaI AGTACT 1 cut(s) 460
SchI GAGTC 2 cut(s) 304, 446
SduI GDGCHC 1 cut(s) 510
SfaNI GCATC 2 cut(s) 234, 363
SfuI TTCGAA 1 cut(s) 196
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 342, 420
Sse9I AATT 9 cut(s) 411, 418, 466, 524, 538, 605, 656, 697, 731
SsiI CCGC 3 cut(s) 109, 260, 567
SspI AATATT 1 cut(s) 582
SspMI CTAG 1 cut(s) 534
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 4 cut(s) 116, 268, 327, 346
TaqI TCGA 4 cut(s) 196, 279, 286, 357
TasI AATT 9 cut(s) 411, 418, 466, 524, 538, 605, 656, 697, 731
TatI WGTACW 1 cut(s) 458
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 4 cut(s) 627, 663, 716, 748
Tru9I TTAA 4 cut(s) 627, 663, 716, 748
TseFI GTSAC 3 cut(s) 209, 377, 670
Tsp45I GTSAC 3 cut(s) 209, 377, 670
TspDTI ATGAA 5 cut(s) 404, 459, 537, 564, 625
TspGWI ACGGA 1 cut(s) 307
Tth111I GACNNNGTC 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 3 cut(s) 524, 605, 697
XmnI GAANNNNTTC 1 cut(s) 528
XspI CTAG 1 cut(s) 534
ZrmI AGTACT 1 cut(s) 460
Zsp2I ATGCAT 2 cut(s) 634, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.