Rh5DG388100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001043
Physical Location & Seq
Forward (+)
60245227 .. 60245559
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG388100.1

Sequence Viewer

Length: 333 bp
ATGCCATTGGAGGTGGATGATGGCTTTGATTTACCAAATGAGAATGGGGTGATTCGCATATCTCCAATAAAGAAGAGAGAAAGACTAAAAGGACACAAGAACAAATACAAGACCAAGGGGCCTAAACCTAGGAGGACTAGGTTTCCCAAGGTAATTGGGGAAGCTGTGATTAATGAAGAGATGGCTATTGTTGAGCTTGCAAATGATGAAATTGTAGGTGGATCTGAAGTTGTAGGTGAAACTGAAGATGTGATAGCAAATGCTATGGAGGAGGCAGCTAAGAGAAGTGATATTTTGCTTATAGCATATGCACCTTCCTCACCTATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.1

Weight (kDa)

5.5

Isoelectric Point (pI)

57.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 229
AcuI CTGAAG 2 cut(s) 246, 264
AluBI AGCT 3 cut(s) 164, 196, 278
AluI AGCT 3 cut(s) 164, 196, 278
AlwI GGATC 1 cut(s) 229
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 275
AseI ATTAAT 1 cut(s) 171
AspA2I CCTAGG 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 3 cut(s) 61, 248, 312
AvrII CCTAGG 1 cut(s) 128
BbvI GCAGC 1 cut(s) 287
BccI CCATC 2 cut(s) 14, 175
BfaI CTAG 2 cut(s) 129, 138
BisI GCNGC 1 cut(s) 276
BlnI CCTAGG 1 cut(s) 128
BlsI GCNGC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 120
BsaJI CCNNGG 3 cut(s) 114, 128, 147
BseDI CCNNGG 3 cut(s) 114, 128, 147
BseGI GGATG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 287
BshFI GGCC 1 cut(s) 121
BsnI GGCC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 221
BspANI GGCC 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 120
BspPI GGATC 1 cut(s) 229
BssECI CCNNGG 3 cut(s) 114, 128, 147
BssMI GATC 1 cut(s) 221
BssT1I CCWWGG 3 cut(s) 114, 128, 147
Bst6I CTCTTC 2 cut(s) 68, 171
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 224
BstMBI GATC 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 119
CviJI RGCY 6 cut(s) 24, 121, 164, 185, 196, 278
CviKI_1 RGCY 6 cut(s) 24, 121, 164, 185, 196, 278
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Eam1104I CTCTTC 2 cut(s) 68, 171
EarI CTCTTC 2 cut(s) 68, 171
Eco130I CCWWGG 3 cut(s) 114, 128, 147
Eco57I CTGAAG 2 cut(s) 246, 264
EcoO109I RGGNCCY 1 cut(s) 119
EcoT14I CCWWGG 3 cut(s) 114, 128, 147
ErhI CCWWGG 3 cut(s) 114, 128, 147
FaiI YATR 5 cut(s) 59, 266, 302, 307, 309
FauNDI CATATG 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 2 cut(s) 129, 138
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 121
HinfI GANTC 1 cut(s) 52
HphI GGTGA 3 cut(s) 61, 248, 312
Hpy188I TCNGA 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 324
HpyCH4V TGCA 2 cut(s) 200, 311
HpyF3I CTNAG 1 cut(s) 279
Kzo9I GATC 1 cut(s) 221
Lsp1109I GCAGC 1 cut(s) 287
MaeI CTAG 2 cut(s) 129, 138
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 3 cut(s) 85, 188, 257
MflI RGATCY 1 cut(s) 221
MluCI AATT 2 cut(s) 153, 210
MnlI CCTC 5 cut(s) 4, 126, 262, 265, 328
MseI TTAA 1 cut(s) 171
NdeI CATATG 1 cut(s) 307
NdeII GATC 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 277
PshBI ATTAAT 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 119
PsuI RGATCY 1 cut(s) 221
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 1 cut(s) 119
SgeI CNNG 7 cut(s) 109, 121, 127, 141, 150, 160, 209
Sse9I AATT 2 cut(s) 153, 210
SspMI CTAG 2 cut(s) 129, 138
StyI CCWWGG 3 cut(s) 114, 128, 147
TasI AATT 2 cut(s) 153, 210
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 2 cut(s) 189, 222
VspI ATTAAT 1 cut(s) 171
XmaJI CCTAGG 1 cut(s) 128
XspI CTAG 2 cut(s) 129, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.