Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006967.1

Orthogroup ID

OG0001043

Physical Location & Seq

Genomic Coordinates Forward (+)

43800 .. 46206

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006967.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atggaccatggttcaggtggaccacggttatgtttggcgcgtgttgttcatgtgcggtttgctggtgagtggaattatgagtttgtgggtcccattgcttccattaacgcgttggatttaggcgccttttatatagttctaagcttcttcctactgtcggacaattcattggtcgagtccatggtggcggtgggcaatgacggcggcgatgtcttgagctctggtcagagcgtggtggattccatgactcgaagcaagcttgatcggggaggttctcgaatggagggtcgttatagcaacaacatggaggaaatcaagatgatgattcaacaacttgcagaacatatcaatcgcatcgaaactcgacgcctaggaggtaagagttacgacggggagagagacgtttatcaacgtgtcacttgcatcgaacctcttgccaagacggtgtgggttttgacagggaaggagacgctggcccttttcatcactgtgctctgttgtgtgagttggacgaaaaggtggaactgtgacaattgtgatgatcagatttgtaatggaaattgtttggacgttgaaggtaatattgatgaacatggtagcaatactattgataaacggtctgagctagcagtaggaaattttaccatgcacatgcaaggaattgatccaattatacaagtcgatgaagctactgtaccatcaattgaagtggaagacctatacccatatataggtattgacaaaattgatgtgggtgagaggactaggcatgagccggattcaatcttggatgagagtactacaagtaagaagagagcgaagaggacgagagatgaaagcgcttggtggaatgagtggtgcgaccaaacgaagttaatgaagaaggggctgacgaggtggcctccacccgcttttgactctgagtttccatacaagaaccccaaccccctcaattcgattcctccctcgccaccacatgcgagcggcgagcacgatccgattatctcatacatcacagaaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.28

Weight (kDa)

4.96

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07634
prunus_persica	Prupe.1G102800_v2.0.a1 Prupe.8G086900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0246931
rosa_laevigata	RLG00000003129 RLG00000005865 RLG00000005867 RLG00000008042 RLG00000017998 RLG00000019187 RLG00000019483 RLG00000022446 RLG00000023139 RLG00000032380 RLG00000034989 RLG00000037076
rosa_multiflora	Rmu_co8397459.1_g000001 Rmu_sc0000195.1_g000037 Rmu_sc0000516.1_g000018 Rmu_sc0001091.1_g000004 Rmu_sc0001113.1_g000012 Rmu_sc0001673.1_g000033 Rmu_sc0001694.1_g000016 Rmu_sc0001793.1_g000051 Rmu_sc0002676.1_g000007 Rmu_sc0002986.1_g000020 Rmu_sc0004253.1_g000001 Rmu_sc0004478.1_g000012 Rmu_sc0004614.1_g000007 Rmu_sc0005387.1_g000002 Rmu_sc0006592.1_g000013 Rmu_sc0006967.1_g000011 Rmu_sc0011039.1_g000002 Rmu_sc0016880.1_g000004 Rmu_ssc0000182.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024880 Rroxscaffold_1G00053230 Rroxscaffold_1G00068810 Rroxscaffold_1G00068820 Rroxscaffold_2G00094300 Rroxscaffold_2G00095320 Rroxscaffold_2G00095330 Rroxscaffold_2G00108180 Rroxscaffold_2G00130520 Rroxscaffold_2G00131280 Rroxscaffold_3G00229800 Rroxscaffold_4G00279060 Rroxscaffold_4G00312500 Rroxscaffold_4G00312510 Rroxscaffold_7G00215840
rosa_samantha	Rh1BG408300 Rh3AG269100 Rh3CG198400 Rh3CG303300 Rh5AG056400 Rh5DG052900 Rh5DG388100 Rh7BG462700 Rh7CG506000
rosa_wichuraiana	Rw1G013080 Rw2G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	984
AccII	CGCG	2 cut(s)	40, 110
AciI	CCGC	5 cut(s)	55, 188, 204, 909, 984
AclWI	GGATC	2 cut(s)	659, 989
AcsI	RAATTY	1 cut(s)	637
AcyI	GRCGYC	2 cut(s)	123, 367
AfaI	GTAC	2 cut(s)	696, 799
AfeI	AGCGCT	1 cut(s)	841
AfiI	CCNNNNNNNGG	2 cut(s)	157, 731
AflIII	ACRYGT	2 cut(s)	108, 412
AgsI	TTSAA	4 cut(s)	329, 575, 707, 783
AluBI	AGCT	5 cut(s)	144, 219, 259, 625, 689
AluI	AGCT	5 cut(s)	144, 219, 259, 625, 689
Alw21I	GWGCWC	3 cut(s)	221, 495, 993
Alw26I	GTCTC	2 cut(s)	393, 461
AlwI	GGATC	2 cut(s)	659, 989
Aor51HI	AGCGCT	1 cut(s)	841
AoxI	GGCC	2 cut(s)	474, 899
ApoI	RAATTY	1 cut(s)	637
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AspA2I	CCTAGG	1 cut(s)	370
AspLEI	GCGC	3 cut(s)	40, 125, 842
AspS9I	GGNCC	4 cut(s)	4, 20, 89, 475
AsuHPI	GGTGA	2 cut(s)	77, 767
AsuNHI	GCTAGC	1 cut(s)	625
AvaII	GGWCC	3 cut(s)	4, 20, 89
AvrII	CCTAGG	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	221
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
BbsI	GAAGAC	1 cut(s)	720
Bbv12I	GWGCWC	3 cut(s)	221, 495, 993
BccI	CCATC	1 cut(s)	706
BceAI	ACGGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	393, 461
BfaI	CTAG	3 cut(s)	371, 626, 765
BfoI	RGCGCY	2 cut(s)	126, 843
BisI	GCNGC	2 cut(s)	205, 985
BlnI	CCTAGG	1 cut(s)	370
BlsI	GCNGC	2 cut(s)	206, 986
BmcAI	AGTACT	1 cut(s)	799
Bme18I	GGWCC	3 cut(s)	4, 20, 89
BmgT120I	GGNCC	4 cut(s)	4, 20, 89, 475
BmiI	GGNNCC	3 cut(s)	90, 91, 124
BmsI	GCATC	2 cut(s)	363, 432
BmtI	GCTAGC	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	720
BplI	GAGNNNNNCTC	2 cut(s)	886, 918
BpuEI	CTTGAG	1 cut(s)	235
BsaHI	GRCGYC	2 cut(s)	123, 367
BsaJI	CCNNGG	4 cut(s)	7, 23, 180, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 731
Bse3DI	GCAATG	2 cut(s)	93, 202
BseDI	CCNNGG	4 cut(s)	7, 23, 180, 370
BseGI	GGATG	1 cut(s)	796
BseLI	CCNNNNNNNGG	2 cut(s)	157, 731
BseMI	GCAATG	2 cut(s)	93, 202
BseMII	CTCAG	2 cut(s)	612, 912
Bsh1236I	CGCG	2 cut(s)	40, 110
BshFI	GGCC	2 cut(s)	476, 901
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	3 cut(s)	221, 495, 993
BsiSI	CCGG	1 cut(s)	776
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	157, 731
BsmAI	GTCTC	2 cut(s)	393, 461
BsmBI	CGTCTC	2 cut(s)	393, 461
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	476, 901
Bsp1286I	GDGCHC	3 cut(s)	221, 495, 993
Bsp143I	GATC	4 cut(s)	262, 541, 664, 994
Bsp19I	CCATGG	2 cut(s)	7, 180
BspACI	CCGC	5 cut(s)	55, 188, 204, 909, 984
BspANI	GGCC	2 cut(s)	476, 901
BspCNI	CTCAG	2 cut(s)	613, 913
BspFNI	CGCG	2 cut(s)	40, 110
BspLI	GGNNCC	3 cut(s)	90, 91, 124
BspOI	GCTAGC	1 cut(s)	629
BspPI	GGATC	2 cut(s)	659, 989
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	984
BsrDI	GCAATG	2 cut(s)	93, 202
BssECI	CCNNGG	4 cut(s)	7, 23, 180, 370
BssMI	GATC	4 cut(s)	262, 541, 664, 994
BssNI	GRCGYC	2 cut(s)	123, 367
BssT1I	CCWWGG	3 cut(s)	7, 180, 370
Bst4CI	ACNGT	7 cut(s)	27, 156, 445, 490, 527, 618, 694
Bst6I	CTCTTC	2 cut(s)	806, 815
BstACI	GRCGYC	2 cut(s)	123, 367
BstC8I	GCNNGC	5 cut(s)	257, 474, 627, 982, 989
BstDEI	CTNAG	3 cut(s)	140, 621, 921
BstDSI	CCRYGG	3 cut(s)	7, 23, 180
BstF5I	GGATG	1 cut(s)	796
BstFNI	CGCG	2 cut(s)	40, 110
BstH2I	RGCGCY	2 cut(s)	126, 843
BstHHI	GCGC	3 cut(s)	40, 125, 842
BstKTI	GATC	4 cut(s)	265, 544, 667, 997
BstMAI	GTCTC	2 cut(s)	393, 461
BstMBI	GATC	4 cut(s)	262, 541, 664, 994
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstNSI	RCATGY	2 cut(s)	655, 980
BstUI	CGCG	2 cut(s)	40, 110
BstV2I	GAAGAC	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	476, 901
BtgI	CCRYGG	3 cut(s)	7, 23, 180
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	796
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	5 cut(s)	257, 474, 627, 982, 989
CfoI	GCGC	3 cut(s)	40, 125, 842
Cfr13I	GGNCC	4 cut(s)	4, 20, 89, 475
CseI	GACGC	2 cut(s)	375, 478
Csp6I	GTAC	2 cut(s)	695, 798
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviJI	RGCY	9 cut(s)	144, 219, 259, 476, 625, 689, 775, 889, 901
CviKI_1	RGCY	9 cut(s)	144, 219, 259, 476, 625, 689, 775, 889, 901
CviQI	GTAC	2 cut(s)	695, 798
DdeI	CTNAG	3 cut(s)	140, 621, 921
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	4 cut(s)	264, 543, 666, 996
DpnII	GATC	4 cut(s)	262, 541, 664, 994
Eam1104I	CTCTTC	2 cut(s)	806, 815
EarI	CTCTTC	2 cut(s)	806, 815
Ecl136II	GAGCTC	1 cut(s)	219
Eco130I	CCWWGG	3 cut(s)	7, 180, 370
Eco24I	GRGCYC	1 cut(s)	221
Eco47I	GGWCC	3 cut(s)	4, 20, 89
Eco47III	AGCGCT	1 cut(s)	841
Eco53kI	GAGCTC	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	89
EcoT14I	CCWWGG	3 cut(s)	7, 180, 370
EcoT38I	GRGCYC	1 cut(s)	221
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
ErhI	CCWWGG	3 cut(s)	7, 180, 370
Esp3I	CGTCTC	2 cut(s)	393, 461
FaqI	GGGAC	1 cut(s)	75
FauI	CCCGC	1 cut(s)	916
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	2 cut(s)	205, 985
FokI	GGATG	1 cut(s)	803
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	205, 985
FspBI	CTAG	3 cut(s)	371, 626, 765
GlaI	GCGC	3 cut(s)	39, 124, 841
GluI	GCNGC	2 cut(s)	205, 985
HaeII	RGCGCY	2 cut(s)	126, 843
HaeIII	GGCC	2 cut(s)	476, 901
HapII	CCGG	1 cut(s)	776
HgaI	GACGC	2 cut(s)	375, 478
HhaI	GCGC	3 cut(s)	40, 125, 842
Hin1I	GRCGYC	2 cut(s)	123, 367
Hin6I	GCGC	3 cut(s)	38, 123, 840
HinP1I	GCGC	3 cut(s)	38, 123, 840
HindIII	AAGCTT	2 cut(s)	142, 257
HinfI	GANTC	7 cut(s)	176, 239, 247, 325, 779, 917, 958
HpaII	CCGG	1 cut(s)	776
HphI	GGTGA	2 cut(s)	77, 767
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	6 cut(s)	160, 228, 546, 622, 922, 999
Hpy188III	TCNNGA	3 cut(s)	214, 276, 316
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	2 cut(s)	369, 392
HpyAV	CCTTC	3 cut(s)	457, 569, 877
HpyCH4III	ACNGT	7 cut(s)	27, 156, 445, 490, 527, 618, 694
HpyCH4IV	ACGT	3 cut(s)	402, 412, 570
HpyCH4V	TGCA	4 cut(s)	338, 423, 649, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	3 cut(s)	140, 621, 921
HpySE526I	ACGT	3 cut(s)	402, 412, 570
Hsp92I	GRCGYC	2 cut(s)	123, 367
HspAI	GCGC	3 cut(s)	38, 123, 840
KasI	GGCGCC	1 cut(s)	122
KflI	GGGWCCC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	262, 541, 664, 994
LpnPI	CCDG	5 cut(s)	48, 207, 444, 458, 789
LweI	GCATC	2 cut(s)	363, 432
MaeI	CTAG	3 cut(s)	371, 626, 765
MaeII	ACGT	3 cut(s)	402, 412, 570
MaeIII	GTNAC	3 cut(s)	383, 415, 527
MalI	GATC	4 cut(s)	264, 543, 666, 996
MbiI	CCGCTC	1 cut(s)	984
MboI	GATC	4 cut(s)	262, 541, 664, 994
MboII	GAAGA	5 cut(s)	139, 725, 823, 832, 892
MfeI	CAATTG	2 cut(s)	532, 702
MhlI	GDGCHC	3 cut(s)	221, 495, 993
MluI	ACGCGT	1 cut(s)	108
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	3 cut(s)	185, 241, 911
MmeI	TCCRAC	3 cut(s)	93, 138, 488
MseI	TTAA	2 cut(s)	105, 875
MslI	CAYNNNNRTG	3 cut(s)	28, 488, 650
MspI	CCGG	1 cut(s)	776
MunI	CAATTG	2 cut(s)	532, 702
MvnI	CGCG	2 cut(s)	40, 110
MwoI	GCNNNNNNNGC	1 cut(s)	201
NarI	GGCGCC	1 cut(s)	123
NcoI	CCATGG	2 cut(s)	7, 180
NdeII	GATC	4 cut(s)	262, 541, 664, 994
NheI	GCTAGC	1 cut(s)	625
NlaIV	GGNNCC	3 cut(s)	90, 91, 124
NmuCI	GTSAC	2 cut(s)	415, 527
NspI	RCATGY	2 cut(s)	655, 980
PfeI	GAWTC	4 cut(s)	239, 325, 779, 958
PkrI	GCNGC	2 cut(s)	206, 986
PleI	GAGTC	3 cut(s)	184, 241, 911
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	3 cut(s)	184, 241, 911
PpuMI	RGGWCCY	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	89
PspN4I	GGNNCC	3 cut(s)	90, 91, 124
PspPI	GGNCC	4 cut(s)	4, 20, 89, 475
PspPPI	RGGWCCY	1 cut(s)	89
RsaI	GTAC	2 cut(s)	696, 799
RsaNI	GTAC	2 cut(s)	695, 798
RseI	CAYNNNNRTG	3 cut(s)	28, 488, 650
SacI	GAGCTC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	105, 875
SatI	GCNGC	2 cut(s)	205, 985
Sau3AI	GATC	4 cut(s)	262, 541, 664, 994
Sau96I	GGNCC	4 cut(s)	4, 20, 89, 475
ScaI	AGTACT	1 cut(s)	799
SchI	GAGTC	3 cut(s)	185, 241, 911
SduI	GDGCHC	3 cut(s)	221, 495, 993
SfaNI	GCATC	2 cut(s)	363, 432
SfoI	GGCGCC	1 cut(s)	124
SinI	GGWCC	3 cut(s)	4, 20, 89
SmiMI	CAYNNNNRTG	3 cut(s)	28, 488, 650
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
SsiI	CCGC	5 cut(s)	55, 188, 204, 909, 984
SspDI	GGCGCC	1 cut(s)	122
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	3 cut(s)	371, 626, 765
SstI	GAGCTC	1 cut(s)	221
StyI	CCWWGG	3 cut(s)	7, 180, 370
TaaI	ACNGT	7 cut(s)	27, 156, 445, 490, 527, 618, 694
TaiI	ACGT	3 cut(s)	405, 415, 573
TaqI	TCGA	8 cut(s)	174, 250, 277, 357, 364, 426, 681, 956
TatI	WGTACW	1 cut(s)	797
TauI	GCSGC	2 cut(s)	207, 987
TfiI	GAWTC	4 cut(s)	239, 325, 779, 958
Tru1I	TTAA	2 cut(s)	105, 875
Tru9I	TTAA	2 cut(s)	105, 875
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	2 cut(s)	415, 527
Tsp45I	GTSAC	2 cut(s)	415, 527
TspDTI	ATGAA	7 cut(s)	38, 156, 472, 603, 699, 849, 893
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	3 cut(s)	4, 20, 89
XapI	RAATTY	1 cut(s)	637
XceI	RCATGY	2 cut(s)	655, 980
XcmI	CCANNNNNNNNNTGG	3 cut(s)	14, 109, 187
XmaJI	CCTAGG	1 cut(s)	370
XspI	CTAG	3 cut(s)	371, 626, 765
ZrmI	AGTACT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.