Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001043

Physical Location & Seq

Genomic Coordinates Reverse (-)

66732335 .. 66735585

Gene Structure 3251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCTCGGGTCGGCCGAAGAAGGGGAGGTTTCGGAATGGAGGGTCATGGCATCAACAACGATATGGCTGAAATTAAAAGGATGCTTCAGCAACTTGCGTTCTTCTTCGATTCATTGAACTTGGATATGCCGCCACTTTTCGATAATTATAATTCTGAACATTGCGATGAAAATTGCTTGGAGATTGAAGCGGTTGACCTGCCCATGCAAAGGAATTATCTCCCGGTGCAACAAAATATAGTTAAAGCCATGCTAGTCCATCTTGTGGAAACATCATCAGCAATTGTAAGTCATGAAATTAATTCATGCATGGGTGATATCTTTGAATTGGATGATCACGTGGGTAATTCAGATCCAAAGCTCAAACTAGATGTGGATGTTGGTATTGTTTTAGGATCTCAAGAAATAGAATATAGTACGTGTGGGTCAATACGTGAGCATCCTAATAGAATTGTTGGTGTTGATCTTAAGAAGTCATTTGTCTCCAACAAACTAGCGAAGAGTGTTGAATATAAAAGTAAAGATGTATCCCTCAAATTTCATGATCTATTACAAGAAGATGCAACTCATCAATTTATTGATTTCATTGGGGTTAGTATTTTCTACTTACAGATTCCGAAGATATTAATTGATATTGTCAATCGTATCAAGAAAGGTTCATTATGTTGCAAAGTGGAAGGGTATCACTTTCATGACAAGTCGACAAGGACTTGTGTTGGTGGAGGAATGTCATACGGAGTTGATGTAGGCCAATCTGAGAAGGGATCAGTCCTCAAGGGGTTAGATATTGGTGTAAAAGGCATGCGGCGATTGCTTATGGTTCCTCCTGAGCTGGCATATGGAAGCAAAGGAGTCCAAGAAATCCCTCCAAATGCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

293

Amino Acids

32.65

Weight (kDa)

5.81

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	253 - 292	1.1e-06	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07634
prunus_persica	Prupe.1G102800_v2.0.a1 Prupe.8G086900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0246931
rosa_laevigata	RLG00000003129 RLG00000005865 RLG00000005867 RLG00000008042 RLG00000017998 RLG00000019187 RLG00000019483 RLG00000022446 RLG00000023139 RLG00000032380 RLG00000034989 RLG00000037076
rosa_multiflora	Rmu_co8397459.1_g000001 Rmu_sc0000195.1_g000037 Rmu_sc0000516.1_g000018 Rmu_sc0001091.1_g000004 Rmu_sc0001113.1_g000012 Rmu_sc0001673.1_g000033 Rmu_sc0001694.1_g000016 Rmu_sc0001793.1_g000051 Rmu_sc0002676.1_g000007 Rmu_sc0002986.1_g000020 Rmu_sc0004253.1_g000001 Rmu_sc0004478.1_g000012 Rmu_sc0004614.1_g000007 Rmu_sc0005387.1_g000002 Rmu_sc0006592.1_g000013 Rmu_sc0006967.1_g000011 Rmu_sc0011039.1_g000002 Rmu_sc0016880.1_g000004 Rmu_ssc0000182.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024880 Rroxscaffold_1G00053230 Rroxscaffold_1G00068810 Rroxscaffold_1G00068820 Rroxscaffold_2G00094300 Rroxscaffold_2G00095320 Rroxscaffold_2G00095330 Rroxscaffold_2G00108180 Rroxscaffold_2G00130520 Rroxscaffold_2G00131280 Rroxscaffold_3G00229800 Rroxscaffold_4G00279060 Rroxscaffold_4G00312500 Rroxscaffold_4G00312510 Rroxscaffold_7G00215840
rosa_samantha	Rh1BG408300 Rh3AG269100 Rh3CG198400 Rh3CG303300 Rh5AG056400 Rh5DG052900 Rh5DG388100 Rh7BG462700 Rh7CG506000
rosa_wichuraiana	Rw1G013080 Rw2G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	701
AciI	CCGC	3 cut(s)	131, 191, 805
AclWI	GGATC	3 cut(s)	347, 403, 772
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	71
AcvI	CACGTG	1 cut(s)	340
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	3 cut(s)	22, 210, 265
AflII	CTTAAG	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	419
AgsI	TTSAA	4 cut(s)	118, 188, 326, 509
AluBI	AGCT	2 cut(s)	361, 832
AluI	AGCT	2 cut(s)	361, 832
Alw26I	GTCTC	2 cut(s)	9, 487
AlwI	GGATC	3 cut(s)	347, 403, 772
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	2 cut(s)	13, 748
ApoI	RAATTY	1 cut(s)	536
AseI	ATTAAT	2 cut(s)	300, 626
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	6
BbrPI	CACGTG	1 cut(s)	340
BccI	CCATC	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	538
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	9, 487
BfaI	CTAG	3 cut(s)	254, 368, 494
BfrI	CTTAAG	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	131, 806
BlsI	GCNGC	2 cut(s)	132, 807
Bme1390I	CCNGG	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	4 cut(s)	60, 72, 448, 550
Bpu10I	CCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	2 cut(s)	384, 758
BpuMI	CCSGG	1 cut(s)	224
BsaAI	YACGTR	3 cut(s)	340, 420, 434
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 210, 265
Bse3DI	GCAATG	1 cut(s)	160
BseGI	GGATG	4 cut(s)	87, 337, 382, 439
BseLI	CCNNNNNNNGG	3 cut(s)	22, 210, 265
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	747, 819
BseX3I	CGGCCG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	2 cut(s)	15, 750
BsiEI	CGRYCG	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	3 cut(s)	22, 210, 265
BsmAI	GTCTC	2 cut(s)	9, 487
BsnI	GGCC	2 cut(s)	15, 750
BsoBI	CYCGRG	1 cut(s)	6
Bsp143I	GATC	6 cut(s)	334, 352, 395, 463, 544, 764
BspACI	CCGC	3 cut(s)	131, 191, 805
BspANI	GGCC	2 cut(s)	15, 750
BspCNI	CTCAG	2 cut(s)	748, 820
BspHI	TCATGA	3 cut(s)	292, 541, 691
BspLI	GGNNCC	1 cut(s)	822
BspMI	ACCTGC	1 cut(s)	207
BspPI	GGATC	3 cut(s)	347, 403, 772
BspTI	CTTAAG	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	160
BssMI	GATC	6 cut(s)	334, 352, 395, 463, 544, 764
Bst6I	CTCTTC	1 cut(s)	494
BstAFI	CTTAAG	1 cut(s)	467
BstBAI	YACGTR	3 cut(s)	340, 420, 434
BstC8I	GCNNGC	2 cut(s)	803, 834
BstDEI	CTNAG	2 cut(s)	756, 828
BstF5I	GGATG	4 cut(s)	87, 337, 382, 439
BstKTI	GATC	6 cut(s)	337, 355, 398, 466, 547, 767
BstMAI	GTCTC	2 cut(s)	9, 487
BstMBI	GATC	6 cut(s)	334, 352, 395, 463, 544, 764
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	811
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	1 cut(s)	222
BstX2I	RGATCY	2 cut(s)	352, 395
BstYI	RGATCY	2 cut(s)	352, 395
BstZI	CGGCCG	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	15, 750
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	4 cut(s)	87, 337, 382, 439
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	803, 834
CciI	TCATGA	3 cut(s)	292, 541, 691
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	9 cut(s)	47, 205, 250, 293, 306, 310, 542, 692, 802
CviJI	RGCY	6 cut(s)	15, 68, 248, 361, 750, 832
CviKI_1	RGCY	6 cut(s)	15, 68, 248, 361, 750, 832
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	2 cut(s)	756, 828
DpnI	GATC	6 cut(s)	336, 354, 397, 465, 546, 766
DpnII	GATC	6 cut(s)	334, 352, 395, 463, 544, 764
EaeI	YGGCCR	1 cut(s)	13
EagI	CGGCCG	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
EclXI	CGGCCG	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	319
Eco52I	CGGCCG	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	71
Eco72I	CACGTG	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	311
FaeI	CATG	9 cut(s)	50, 208, 253, 296, 309, 313, 545, 695, 805
FatI	CATG	9 cut(s)	46, 204, 249, 292, 305, 309, 541, 691, 801
FauNDI	CATATG	1 cut(s)	838
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	701
Fnu4HI	GCNGC	2 cut(s)	131, 806
FokI	GGATG	4 cut(s)	94, 344, 389, 426
Fsp4HI	GCNGC	2 cut(s)	131, 806
FspBI	CTAG	3 cut(s)	254, 368, 494
GluI	GCNGC	2 cut(s)	131, 806
HaeIII	GGCC	2 cut(s)	15, 750
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	9 cut(s)	50, 208, 253, 296, 309, 313, 545, 695, 805
HincII	GTYRAC	2 cut(s)	196, 702
HindII	GTYRAC	2 cut(s)	196, 702
HinfI	GANTC	3 cut(s)	110, 613, 852
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	196, 702
Hpy188I	TCNGA	5 cut(s)	35, 157, 352, 618, 757
Hpy188III	TCNNGA	6 cut(s)	293, 401, 542, 649, 692, 827
Hpy8I	GTNNAC	2 cut(s)	196, 702
HpyAV	CCTTC	3 cut(s)	15, 671, 754
HpyCH4IV	ACGT	3 cut(s)	339, 419, 433
HpyCH4V	TGCA	6 cut(s)	208, 229, 309, 563, 669, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	811
HpyF3I	CTNAG	2 cut(s)	756, 828
HpySE526I	ACGT	3 cut(s)	339, 419, 433
Hsp92II	CATG	9 cut(s)	50, 208, 253, 296, 309, 313, 545, 695, 805
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	6 cut(s)	334, 352, 395, 463, 544, 764
LpnPI	CCDG	4 cut(s)	212, 237, 818, 840
LweI	GCATC	4 cut(s)	60, 72, 448, 550
MaeI	CTAG	3 cut(s)	254, 368, 494
MaeII	ACGT	3 cut(s)	339, 419, 433
MalI	GATC	6 cut(s)	336, 354, 397, 465, 546, 766
MboI	GATC	6 cut(s)	334, 352, 395, 463, 544, 764
MboII	GAAGA	6 cut(s)	30, 94, 97, 511, 569, 631
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	2 cut(s)	352, 395
MlyI	GAGTC	1 cut(s)	861
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	7 cut(s)	20, 34, 542, 716, 782, 834, 876
Mph1103I	ATGCAT	1 cut(s)	311
MseI	TTAA	5 cut(s)	75, 243, 300, 468, 626
MslI	CAYNNNNRTG	2 cut(s)	165, 690
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	811
NciI	CCSGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	6 cut(s)	334, 352, 395, 463, 544, 764
NlaIII	CATG	9 cut(s)	50, 208, 253, 296, 309, 313, 545, 695, 805
NlaIV	GGNNCC	1 cut(s)	822
NsiI	ATGCAT	1 cut(s)	311
NspI	RCATGY	1 cut(s)	805
PaeI	GCATGC	1 cut(s)	805
PagI	TCATGA	3 cut(s)	292, 541, 691
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	110, 613
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	132, 807
PleI	GAGTC	1 cut(s)	860
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	860
Ppu21I	YACGTR	3 cut(s)	340, 420, 434
PshBI	ATTAAT	2 cut(s)	300, 626
PsiI	TTATAA	1 cut(s)	150
PspCI	CACGTG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	822
PsuI	RGATCY	2 cut(s)	352, 395
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
RseI	CAYNNNNRTG	2 cut(s)	165, 690
SalI	GTCGAC	1 cut(s)	700
SaqAI	TTAA	5 cut(s)	75, 243, 300, 468, 626
SatI	GCNGC	2 cut(s)	131, 806
Sau3AI	GATC	6 cut(s)	334, 352, 395, 463, 544, 764
SchI	GAGTC	1 cut(s)	861
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	8 cut(s)	31, 201, 342, 363, 422, 436, 658, 834
SfaNI	GCATC	4 cut(s)	60, 72, 448, 550
SmiMI	CAYNNNNRTG	2 cut(s)	165, 690
SmlI	CTYRAG	3 cut(s)	399, 467, 773
SmoI	CTYRAG	3 cut(s)	399, 467, 773
SphI	GCATGC	1 cut(s)	805
SsiI	CCGC	3 cut(s)	131, 191, 805
SspMI	CTAG	3 cut(s)	254, 368, 494
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	3 cut(s)	342, 422, 436
TaqI	TCGA	3 cut(s)	108, 141, 701
TauI	GCSGC	2 cut(s)	133, 808
TfiI	GAWTC	2 cut(s)	110, 613
Tru1I	TTAA	5 cut(s)	75, 243, 300, 468, 626
Tru9I	TTAA	5 cut(s)	75, 243, 300, 468, 626
TspDTI	ATGAA	8 cut(s)	102, 183, 294, 309, 530, 574, 648, 680
TspGWI	ACGGA	1 cut(s)	750
Van91I	CCANNNNNTGG	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	467
VspI	ATTAAT	2 cut(s)	300, 626
XapI	RAATTY	1 cut(s)	536
XceI	RCATGY	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	701
XspI	CTAG	3 cut(s)	254, 368, 494
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.