Rroxscaffold_4G00312500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001043
Physical Location & Seq
Forward (+)
35501371 .. 35502922
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00312500.1

Sequence Viewer

Length: 417 bp
ATGATTTTTCCGTGGATTCACAGCCTCGACTTAACCATTGAATACACTGTTTCTTGGTTGACTGATTGCGACTCCTTTGCGTATGCACTCCACAACATTTTATGTGCTGAATCTGCCTGTGTTCTATACCTTTCCCCTATCAATTGGTATCGAGCTCGGCAAGAGCTTAATGGATTCCATGTCTCAAGTCAGGCGAAGAAGGGAGGTTTCCAAATGGAGGGTCATGACATCAACAATGATATGGTTGAAATCAAAAAGATGCTTCAGCAACTTGCGGTACGTGTCGTTTGCATCGAAGCTCGAAGACGGGGTCGTAAGATTTCCGACGCGGAGAGAAACGTTATCACCTATAATCAACGTGTTGATCGCATCGAAACTTTCTACCAAGATGGTGATGGTTCCAACGGGGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.95

Weight (kDa)

5.77

Isoelectric Point (pI)

59.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 329
AciI CCGC 2 cut(s) 275, 329
AclI AACGTT 1 cut(s) 339
AcuI CTGAAG 1 cut(s) 248
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 217
AflIII ACRYGT 2 cut(s) 280, 358
AgsI TTSAA 2 cut(s) 41, 248
AluBI AGCT 3 cut(s) 155, 166, 299
AluI AGCT 3 cut(s) 155, 166, 299
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 187
ArsI GACNNNNNNTTYG 4 cut(s) 205, 237, 295, 327
AsuHPI GGTGA 2 cut(s) 337, 404
BanII GRGCYC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 157
BccI CCATC 2 cut(s) 383, 389
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BcoDI GTCTC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 400
BmsI GCATC 3 cut(s) 249, 300, 378
BpiI GAAGAC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 364
BspACI CCGC 2 cut(s) 275, 329
BspFNI CGCG 1 cut(s) 329
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 364
Bst4CI ACNGT 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 11
BstFNI CGCG 1 cut(s) 329
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstUI CGCG 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 45
CciI TCATGA 1 cut(s) 223
CseI GACGC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 278
CviAII CATG 2 cut(s) 179, 224
CviJI RGCY 4 cut(s) 24, 155, 166, 299
CviKI_1 RGCY 4 cut(s) 24, 155, 166, 299
CviQI GTAC 1 cut(s) 278
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
Ecl136II GAGCTC 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 157
FaeI CATG 2 cut(s) 182, 227
FaiI YATR 8 cut(s) 84, 103, 127, 180, 225, 242, 351, 415
FatI CATG 2 cut(s) 178, 223
FriOI GRGCYC 1 cut(s) 157
HgaI GACGC 1 cut(s) 335
Hin1II CATG 2 cut(s) 182, 227
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 4 cut(s) 16, 71, 110, 174
HphI GGTGA 2 cut(s) 337, 404
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 3 cut(s) 280, 339, 358
HpyCH4V TGCA 2 cut(s) 86, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpySE526I ACGT 3 cut(s) 280, 339, 358
Hsp92II CATG 2 cut(s) 182, 227
Kzo9I GATC 1 cut(s) 364
LpnPI CCDG 2 cut(s) 130, 176
LweI GCATC 3 cut(s) 249, 300, 378
MaeII ACGT 3 cut(s) 280, 339, 358
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 2 cut(s) 208, 315
MfeI CAATTG 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 1 cut(s) 142
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 3 cut(s) 35, 197, 211
MseI TTAA 2 cut(s) 32, 168
MunI CAATTG 1 cut(s) 142
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 1 cut(s) 364
NlaIII CATG 2 cut(s) 182, 227
NlaIV GGNNCC 1 cut(s) 400
NmeAIII GCCGAG 1 cut(s) 136
PagI TCATGA 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PfeI GAWTC 3 cut(s) 16, 110, 174
PflFI GACNNNGTC 1 cut(s) 309
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Ppu21I YACGTR 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 157
Psp1406I AACGTT 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 400
PsyI GACNNNGTC 1 cut(s) 309
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SacI GAGCTC 1 cut(s) 157
SaqAI TTAA 2 cut(s) 32, 168
Sau3AI GATC 1 cut(s) 364
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 157
SetI ASST 9 cut(s) 132, 157, 168, 208, 283, 301, 342, 350, 361
SfaNI GCATC 3 cut(s) 249, 300, 378
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 1 cut(s) 142
SsiI CCGC 2 cut(s) 275, 329
SstI GAGCTC 1 cut(s) 157
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 3 cut(s) 283, 342, 361
TaqI TCGA 5 cut(s) 27, 151, 294, 301, 372
TasI AATT 1 cut(s) 142
TfiI GAWTC 3 cut(s) 16, 110, 174
Tru1I TTAA 2 cut(s) 32, 168
Tru9I TTAA 2 cut(s) 32, 168
TscAI CASTG 1 cut(s) 52
TspRI CASTG 1 cut(s) 52
Tth111I GACNNNGTC 1 cut(s) 309
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.