RLG00000005865

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001043
Physical Location & Seq
Forward (+)
2429284 .. 2430137
854 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005865

Sequence Viewer

Length: 516 bp
ATGATTGCTTTTGTGAGGCGTGTTGTGGCATTTGTGGTTAGGAGGAAGAAGAATGAGAATGAAAACAAAATTGGACGAGAGATTGATGTTGACTTTCTTGGGGTCAAAAGTTTTCATCTGCAGGTGTCTAAAAATTTAGTAAATCTAGTCAATCATATCAAGAATTGTGAGAAAAGCTTCAGATTAACGAATTCAATTTTGGCAAGCAAATTATTGAGGTCAAGGTATGGCAACTATTCCAAATATTTATTTATTTGGAATGGACGATTTCAATTGCAAGCTAAAGGATCAACCACGATTTGGATGCAATGGAAAATTTTGTTCGGATTCTGTCTAATCCATGGCTTGAATTCGAGGACGAATTCTTTCCAACCAGGGGAGTCTGATGTAGGAGCATATAACGGACCCTTCCCCCATCAGCCCGATCACCAAGCCACTCCTCAGTATGCTGTCAGCACCTCAAGAGCCGTCACCATCTCTCTAGGAACATGTGCTGCAAACTGCCATTGCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.48

Weight (kDa)

10.03

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 300
AciI CCGC 1 cut(s) 511
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 5 cut(s) 133, 190, 315, 349, 361
AcuI CTGAAG 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 300, 376
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 3 cut(s) 195, 272, 349
AjnI CCWGG 1 cut(s) 373
AjuI GAANNNNNNNTTGG 4 cut(s) 54, 86, 182, 214
AluBI AGCT 2 cut(s) 177, 281
AluI AGCT 2 cut(s) 177, 281
AlwI GGATC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 5 cut(s) 133, 190, 315, 349, 361
Asp700I GAANNNNTTC 2 cut(s) 176, 365
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 419, 463
AvaII GGWCC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 481
BccI CCATC 2 cut(s) 423, 482
BceAI ACGGC 1 cut(s) 452
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 1 cut(s) 375
BfaI CTAG 3 cut(s) 146, 482, 514
BfmI CTRYAG 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 2 cut(s) 495, 511
BlsI GCNGC 2 cut(s) 496, 512
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 445
BsaJI CCNNGG 2 cut(s) 340, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 376
Bse3DI GCAATG 2 cut(s) 314, 505
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 340, 374
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 300, 376
BseMI GCAATG 2 cut(s) 314, 505
BseMII CTCAG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 429
BseXI GCAGC 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 300, 376
Bsp143I GATC 2 cut(s) 287, 424
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 1 cut(s) 511
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 406
BspMAI CTGCAG 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 295
BsrDI GCAATG 2 cut(s) 314, 505
BssECI CCNNGG 2 cut(s) 340, 374
BssMI GATC 2 cut(s) 287, 424
BssT1I CCWWGG 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 205, 279
BstDEI CTNAG 1 cut(s) 441
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 2 cut(s) 290, 427
BstMBI GATC 2 cut(s) 287, 424
BstMWI GCNNNNNNNGC 1 cut(s) 510
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 1 cut(s) 309
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 205, 279
Cfr13I GGNCC 1 cut(s) 404
CviAII CATG 2 cut(s) 341, 489
CviJI RGCY 6 cut(s) 177, 281, 345, 421, 434, 467
CviKI_1 RGCY 6 cut(s) 177, 281, 345, 421, 434, 467
DdeI CTNAG 1 cut(s) 441
DpnI GATC 2 cut(s) 289, 426
DpnII GATC 2 cut(s) 287, 424
Eco130I CCWWGG 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 163
EcoRI GAATTC 3 cut(s) 190, 349, 361
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 2 cut(s) 344, 492
FaiI YATR 7 cut(s) 156, 228, 342, 397, 399, 447, 490
FatI CATG 2 cut(s) 340, 488
Fnu4HI GCNGC 2 cut(s) 495, 511
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 2 cut(s) 495, 511
FspBI CTAG 3 cut(s) 146, 482, 514
GluI GCNGC 2 cut(s) 495, 511
Hin1II CATG 2 cut(s) 344, 492
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 2 cut(s) 327, 380
HphI GGTGA 2 cut(s) 419, 463
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 182, 326, 385
Hpy188III TCNNGA 2 cut(s) 160, 462
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 418
HpyCH4V TGCA 4 cut(s) 121, 277, 307, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 510
HpyF3I CTNAG 1 cut(s) 441
Hsp92II CATG 2 cut(s) 344, 492
Kzo9I GATC 2 cut(s) 287, 424
LmnI GCTCC 1 cut(s) 392
LpnPI CCDG 3 cut(s) 107, 360, 387
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 294
MaeI CTAG 3 cut(s) 146, 482, 514
MaeIII GTNAC 1 cut(s) 469
MalI GATC 2 cut(s) 289, 426
MboI GATC 2 cut(s) 287, 424
MboII GAAGA 2 cut(s) 58, 61
MfeI CAATTG 1 cut(s) 272
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 6 cut(s) 9, 36, 210, 348, 450, 469
MroXI GAANNNNTTC 2 cut(s) 176, 365
MseI TTAA 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 375
MunI CAATTG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 510
NcoI CCATGG 1 cut(s) 340
NdeII GATC 2 cut(s) 287, 424
NlaIII CATG 2 cut(s) 344, 492
NlaIV GGNNCC 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 469
NspI RCATGY 1 cut(s) 492
PaqCI CACCTGC 1 cut(s) 112
PciI ACATGT 1 cut(s) 488
PdmI GAANNNNTTC 2 cut(s) 176, 365
PfeI GAWTC 1 cut(s) 327
PflMI CCANNNNNTGG 1 cut(s) 300
PkrI GCNGC 2 cut(s) 496, 512
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PscI ACATGT 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 1 cut(s) 404
PstI CTGCAG 1 cut(s) 123
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 495, 511
Sau3AI GATC 2 cut(s) 287, 424
Sau96I GGNCC 1 cut(s) 404
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 375
SetI ASST 6 cut(s) 126, 179, 221, 227, 283, 461
SfaNI GCATC 1 cut(s) 294
SfcI CTRYAG 1 cut(s) 119
SinI GGWCC 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
SsiI CCGC 1 cut(s) 511
SspI AATATT 1 cut(s) 245
SspMI CTAG 3 cut(s) 146, 482, 514
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 1 cut(s) 340
TaqI TCGA 1 cut(s) 353
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 2 cut(s) 75, 104
TspGWI ACGGA 1 cut(s) 417
Van91I CCANNNNNTGG 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 5 cut(s) 133, 190, 315, 349, 361
XceI RCATGY 1 cut(s) 492
XmnI GAANNNNTTC 2 cut(s) 176, 365
XspI CTAG 3 cut(s) 146, 482, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.