Rmu_sc0011039.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011039.1
OG0001043
Physical Location & Seq
Forward (+)
4190 .. 4951
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011039.1_g000002.1.cds

Sequence Viewer

Length: 546 bp
atgactcgaagcaagcttgatcggggaggttctcgaatggagggtcgatatagcaatgacatggaggaaatcaagatgatgattcaacaacttgcagaacgtatcaatcgcatcgaaactggacgcctaggaggtaagagtaacgacggggagagagacgtttatcagcgtgtcacttgcatcgaaacctcttgccaagacggtgtgggttttgacggggagggagacattggcccttttcatcactgtgctctgttgtgtgagtcggacgaaaaggtggaaccgatttgtgatggaaattgtttggaggttgaacgtaatattgatgaacatggtagcaatactattgataaagggtctgagctagcagtaggaaatattactatgcacatgcaaggaattgatccaattatacaagcctatgaagctactgtaccatcaattgaagtggaagacgtatacccatacaaaattgatggggtcttggacttccaagaacttggcatgagccgaattcaatcttggatgagagtactacaagtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.31

Weight (kDa)

4.55

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 459
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 1 cut(s) 513
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 2 cut(s) 435, 534
AgsI TTSAA 4 cut(s) 86, 314, 446, 518
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AluBI AGCT 3 cut(s) 16, 364, 428
AluI AGCT 3 cut(s) 16, 364, 428
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 2 cut(s) 150, 219
AlwI GGATC 1 cut(s) 398
AoxI GGCC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 513
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AspA2I CCTAGG 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 364
AvrII CCTAGG 1 cut(s) 127
BarI GAAGNNNNNNTAC 2 cut(s) 417, 449
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 253
BccI CCATC 3 cut(s) 287, 445, 470
BcoDI GTCTC 2 cut(s) 150, 219
BfaI CTAG 2 cut(s) 128, 365
BlnI CCTAGG 1 cut(s) 127
BmcAI AGTACT 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 282
BmsI GCATC 2 cut(s) 120, 189
BmtI GCTAGC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 531
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 124
BshFI GGCC 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 150, 219
BsmBI CGTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 19, 403
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 282
BspOI GCTAGC 1 cut(s) 368
BspPI GGATC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 19, 403
BssNAI GTATAC 1 cut(s) 460
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 127
Bst1107I GTATAC 1 cut(s) 460
Bst4CI ACNGT 3 cut(s) 203, 248, 433
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 14, 366
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 1 cut(s) 531
BstKTI GATC 2 cut(s) 22, 406
BstMAI GTCTC 2 cut(s) 150, 219
BstMBI GATC 2 cut(s) 19, 403
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstNSI RCATGY 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 459
BstXI CCANNNNNNTGG 1 cut(s) 500
BstZ17I GTATAC 1 cut(s) 460
BsuRI GGCC 1 cut(s) 234
BtsCI GGATG 1 cut(s) 531
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 2 cut(s) 14, 366
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 1 cut(s) 132
Csp6I GTAC 2 cut(s) 434, 533
CspCI CAANNNNNGTGG 2 cut(s) 429, 464
CviAII CATG 4 cut(s) 61, 332, 391, 505
CviJI RGCY 6 cut(s) 16, 234, 364, 419, 428, 510
CviKI_1 RGCY 6 cut(s) 16, 234, 364, 419, 428, 510
CviQI GTAC 2 cut(s) 434, 533
DdeI CTNAG 1 cut(s) 360
DpnI GATC 2 cut(s) 21, 405
DpnII GATC 2 cut(s) 19, 403
Eco130I CCWWGG 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 4 cut(s) 64, 335, 394, 508
FatI CATG 4 cut(s) 60, 331, 390, 504
FblI GTMKAC 1 cut(s) 459
FokI GGATG 1 cut(s) 538
FspBI CTAG 2 cut(s) 128, 365
HaeIII GGCC 1 cut(s) 234
HgaI GACGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 4 cut(s) 64, 335, 394, 508
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 3 cut(s) 4, 82, 263
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 2 cut(s) 268, 361
Hpy188III TCNNGA 2 cut(s) 33, 73
Hpy8I GTNNAC 1 cut(s) 460
Hpy99I CGWCG 1 cut(s) 149
HpyCH4III ACNGT 3 cut(s) 203, 248, 433
HpyCH4IV ACGT 4 cut(s) 100, 159, 316, 456
HpyCH4V TGCA 4 cut(s) 95, 180, 388, 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 1 cut(s) 360
HpySE526I ACGT 4 cut(s) 100, 159, 316, 456
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 4 cut(s) 64, 335, 394, 508
Kzo9I GATC 2 cut(s) 19, 403
LpnPI CCDG 1 cut(s) 105
LweI GCATC 2 cut(s) 120, 189
MaeI CTAG 2 cut(s) 128, 365
MaeII ACGT 4 cut(s) 100, 159, 316, 456
MaeIII GTNAC 2 cut(s) 140, 172
MalI GATC 2 cut(s) 21, 405
MboI GATC 2 cut(s) 19, 403
MboII GAAGA 1 cut(s) 464
MfeI CAATTG 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 6 cut(s) 298, 399, 408, 441, 471, 513
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 7 cut(s) 20, 34, 58, 125, 199, 214, 301
MslI CAYNNNNRTG 1 cut(s) 246
MunI CAATTG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 425
NdeII GATC 2 cut(s) 19, 403
NheI GCTAGC 1 cut(s) 364
NlaIII CATG 4 cut(s) 64, 335, 394, 508
NlaIV GGNNCC 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 1 cut(s) 394
PfeI GAWTC 1 cut(s) 82
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 233
RsaI GTAC 2 cut(s) 435, 534
RsaNI GTAC 2 cut(s) 434, 533
RseI CAYNNNNRTG 1 cut(s) 246
Sau3AI GATC 2 cut(s) 19, 403
Sau96I GGNCC 1 cut(s) 233
ScaI AGTACT 1 cut(s) 534
SchI GAGTC 1 cut(s) 272
SduI GDGCHC 1 cut(s) 253
SfaNI GCATC 2 cut(s) 120, 189
SmiMI CAYNNNNRTG 1 cut(s) 246
Sse9I AATT 6 cut(s) 298, 399, 408, 441, 471, 513
SspI AATATT 2 cut(s) 322, 379
SspMI CTAG 2 cut(s) 128, 365
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 3 cut(s) 203, 248, 433
TaiI ACGT 4 cut(s) 103, 162, 319, 459
TaqI TCGA 5 cut(s) 7, 34, 46, 114, 183
TasI AATT 6 cut(s) 298, 399, 408, 441, 471, 513
TatI WGTACW 1 cut(s) 532
TfiI GAWTC 1 cut(s) 82
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 230, 342, 438
TspRI CASTG 1 cut(s) 251
XapI RAATTY 1 cut(s) 513
XceI RCATGY 1 cut(s) 394
XmaJI CCTAGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 2 cut(s) 128, 365
ZrmI AGTACT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.