Rroxscaffold_2G00094300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001043
Physical Location & Seq
Forward (+)
15599619 .. 15604294
4676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094300.1

Sequence Viewer

Length: 864 bp
ATGTCTCGGGTCGGGCGAAGAAGGGGAGGTTTCGGAATGGAGGGTCATGGCACCAACAACGACATGGCTGAAATTAAAAGGATGCTTCAGCAACTTGCGTTCTTCTTCGATTCATTGAACTTGGATATGCCGCCACTTTTCGATAATTATAATTCTGAAGATTGCGATGAAAATTGCTTGGAGATTGAAGCAGTTGACCTGCCCATGCAAAGGAATTATCTCCCGGTGCAACAAAATATAGTTAAAGCCATGCCAGTCCATCTTATGGAAACATCATCAGCAATTGTAAGTCATGAAATTAATTCATGCATGGGTGATATCTTTGAATTGGATGCTCACGTGGGTAATTCAGATCCAAAGCTCAAACTAGATGTGGATGTTGGCATTGTTTTAGGATCTCAAGAAATAGAACATGGTATGTGTGGGTCAATACGTGAGCATCCTAATAGAATTGTTGGTGTTGATCTTAAGAAGTCATTTGTCTCCAACAAACTGGCGAAGAGTGTTGAATCTAAAAGTAAAGATGCATCCCTCAAATTTCATGATCCATTACAAGAAGATGCAACTCATCAATTTATTGATTTCATTGGGACGTCCGCAACCCGAAAAGTGCGGACGTCGCTTCTCGAGCCTCAATCAAGCGTCGACGGAGGCCGGGGGTTTGCGAAGCCGCCGGCAGTCCGTGGAGTCTCCGGCGACCTGTTTGCAGCTCTCGCCCAAAACCTGCAGTTGCAGGTGAGGTTGCTACCCGAAACCGACAACCTCGACCTCCTCCGACCTCGATTGCTGCCCGAAGTCATCCGGGATGCCTCCGGCCTCCTTCCGGCAAGCCTTGCGCCACCGTCGTCGCCCGAAAGCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

31.47

Weight (kDa)

5.2

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AarI CACCTGC 1 cut(s) 724
AatII GACGTC 2 cut(s) 596, 620
Acc36I ACCTGC 3 cut(s) 207, 724, 732
AccB1I GGYRCC 1 cut(s) 50
AccB7I CCANNNNNTGG 1 cut(s) 265
AccI GTMKAC 1 cut(s) 645
AciI CCGC 5 cut(s) 131, 597, 613, 671, 858
AclWI GGATC 3 cut(s) 347, 403, 539
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 2 cut(s) 71, 177
AcvI CACGTG 1 cut(s) 340
AcyI GRCGYC 2 cut(s) 593, 617
AfiI CCNNNNNNNGG 4 cut(s) 210, 265, 823, 857
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 4 cut(s) 118, 188, 326, 509
AluBI AGCT 2 cut(s) 361, 710
AluI AGCT 2 cut(s) 361, 710
Alw26I GTCTC 3 cut(s) 9, 487, 694
AlwI GGATC 3 cut(s) 347, 403, 539
Ama87I CYCGRG 2 cut(s) 6, 626
AoxI GGCC 2 cut(s) 652, 814
ApeKI GCWGC 2 cut(s) 707, 787
ApoI RAATTY 1 cut(s) 536
AseI ATTAAT 1 cut(s) 300
AspLEI GCGC 1 cut(s) 838
AsuC2I CCSGG 3 cut(s) 224, 656, 803
AsuHPI GGTGA 2 cut(s) 326, 748
AvaI CYCGRG 2 cut(s) 6, 626
BanI GGYRCC 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 340
BbvI GCAGC 2 cut(s) 719, 774
BccI CCATC 1 cut(s) 267
BcgI CGANNNNNNTGC 2 cut(s) 686, 720
BcnI CCSGG 3 cut(s) 224, 656, 803
BcoDI GTCTC 3 cut(s) 9, 487, 694
BfaI CTAG 2 cut(s) 368, 862
BfmI CTRYAG 1 cut(s) 725
BfrI CTTAAG 1 cut(s) 467
BfuAI ACCTGC 3 cut(s) 207, 724, 732
BisI GCNGC 5 cut(s) 131, 671, 708, 788, 859
BlsI GCNGC 5 cut(s) 132, 672, 709, 789, 860
Bme1390I CCNGG 3 cut(s) 224, 656, 803
BmeT110I CYCGRG 2 cut(s) 6, 626
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 3 cut(s) 224, 656, 803
BmsI GCATC 7 cut(s) 72, 322, 448, 514, 536, 550, 796
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 3 cut(s) 224, 656, 803
BsaAI YACGTR 2 cut(s) 340, 434
BsaHI GRCGYC 2 cut(s) 593, 617
BsaJI CCNNGG 2 cut(s) 655, 682
Bsc4I CCNNNNNNNGG 4 cut(s) 210, 265, 823, 857
Bse118I RCCGGY 1 cut(s) 673
Bse1I ACTGG 2 cut(s) 254, 498
BseDI CCNNGG 2 cut(s) 655, 682
BseGI GGATG 7 cut(s) 87, 337, 382, 439, 527, 798, 811
BseLI CCNNNNNNNGG 4 cut(s) 210, 265, 823, 857
BseNI ACTGG 2 cut(s) 254, 498
BseRI GAGGAG 1 cut(s) 761
BseXI GCAGC 2 cut(s) 719, 774
BshFI GGCC 2 cut(s) 654, 816
BshNI GGYRCC 1 cut(s) 50
BsiHKCI CYCGRG 2 cut(s) 6, 626
BsiSI CCGG 7 cut(s) 224, 655, 674, 693, 802, 813, 824
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 4 cut(s) 210, 265, 823, 857
BsmAI GTCTC 3 cut(s) 9, 487, 694
BsmFI GGGAC 1 cut(s) 604
BsnI GGCC 2 cut(s) 654, 816
BsoBI CYCGRG 2 cut(s) 6, 626
Bsp143I GATC 4 cut(s) 352, 395, 463, 544
BspACI CCGC 5 cut(s) 131, 597, 613, 671, 858
BspANI GGCC 2 cut(s) 654, 816
BspHI TCATGA 2 cut(s) 292, 541
BspLI GGNNCC 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 729
BspMI ACCTGC 3 cut(s) 207, 724, 732
BspPI GGATC 3 cut(s) 347, 403, 539
BspT107I GGYRCC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 467
BsrFI RCCGGY 1 cut(s) 673
BsrI ACTGG 2 cut(s) 254, 498
BssAI RCCGGY 1 cut(s) 673
BssECI CCNNGG 2 cut(s) 655, 682
BssMI GATC 4 cut(s) 352, 395, 463, 544
BssNI GRCGYC 2 cut(s) 593, 617
Bst4CI ACNGT 1 cut(s) 843
Bst6I CTCTTC 1 cut(s) 494
BstACI GRCGYC 2 cut(s) 593, 617
BstAFI CTTAAG 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 833
BstBAI YACGTR 2 cut(s) 340, 434
BstC8I GCNNGC 2 cut(s) 675, 829
BstDSI CCRYGG 1 cut(s) 682
BstF5I GGATG 7 cut(s) 87, 337, 382, 439, 527, 798, 811
BstHHI GCGC 1 cut(s) 838
BstKTI GATC 4 cut(s) 355, 398, 466, 547
BstMAI GTCTC 3 cut(s) 9, 487, 694
BstMBI GATC 4 cut(s) 352, 395, 463, 544
BstMWI GCNNNNNNNGC 4 cut(s) 619, 628, 713, 833
BstSCI CCNGG 3 cut(s) 222, 654, 801
BstSFI CTRYAG 1 cut(s) 725
BstV1I GCAGC 2 cut(s) 719, 774
BstX2I RGATCY 2 cut(s) 352, 395
BstXI CCANNNNNNTGG 1 cut(s) 493
BstYI RGATCY 2 cut(s) 352, 395
BsuRI GGCC 2 cut(s) 654, 816
BtgI CCRYGG 1 cut(s) 682
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 7 cut(s) 87, 337, 382, 439, 527, 798, 811
BveI ACCTGC 3 cut(s) 207, 724, 732
Cac8I GCNNGC 2 cut(s) 675, 829
CciI TCATGA 2 cut(s) 292, 541
CfoI GCGC 1 cut(s) 838
Cfr10I RCCGGY 1 cut(s) 673
CseI GACGC 1 cut(s) 631
CviAII CATG 9 cut(s) 47, 64, 205, 250, 293, 306, 310, 413, 542
DpnI GATC 4 cut(s) 354, 397, 465, 546
DpnII GATC 4 cut(s) 352, 395, 463, 544
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
Eco32I GATATC 1 cut(s) 319
Eco57I CTGAAG 2 cut(s) 71, 177
Eco72I CACGTG 1 cut(s) 340
Eco88I CYCGRG 2 cut(s) 6, 626
EcoRV GATATC 1 cut(s) 319
EcoT22I ATGCAT 2 cut(s) 311, 529
FaeI CATG 9 cut(s) 50, 67, 208, 253, 296, 309, 313, 416, 545
FaqI GGGAC 1 cut(s) 604
FatI CATG 9 cut(s) 46, 63, 204, 249, 292, 305, 309, 412, 541
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 5 cut(s) 131, 671, 708, 788, 859
FokI GGATG 7 cut(s) 94, 344, 389, 426, 514, 785, 818
Fsp4HI GCNGC 5 cut(s) 131, 671, 708, 788, 859
FspBI CTAG 2 cut(s) 368, 862
GlaI GCGC 1 cut(s) 837
GluI GCNGC 5 cut(s) 131, 671, 708, 788, 859
HaeIII GGCC 2 cut(s) 654, 816
HapII CCGG 7 cut(s) 224, 655, 674, 693, 802, 813, 824
HgaI GACGC 1 cut(s) 631
HhaI GCGC 1 cut(s) 838
Hin1I GRCGYC 2 cut(s) 593, 617
Hin1II CATG 9 cut(s) 50, 67, 208, 253, 296, 309, 313, 416, 545
Hin6I GCGC 1 cut(s) 836
HinP1I GCGC 1 cut(s) 836
HincII GTYRAC 2 cut(s) 196, 646
HindII GTYRAC 2 cut(s) 196, 646
HinfI GANTC 3 cut(s) 110, 509, 687
HpaII CCGG 7 cut(s) 224, 655, 674, 693, 802, 813, 824
HphI GGTGA 2 cut(s) 326, 748
Hpy166II GTNNAC 2 cut(s) 196, 646
Hpy188I TCNGA 4 cut(s) 35, 157, 352, 776
Hpy188III TCNNGA 4 cut(s) 293, 401, 542, 626
Hpy8I GTNNAC 2 cut(s) 196, 646
Hpy99I CGWCG 5 cut(s) 622, 647, 650, 847, 850
HpyAV CCTTC 2 cut(s) 15, 830
HpyCH4III ACNGT 1 cut(s) 843
HpyCH4IV ACGT 4 cut(s) 339, 433, 593, 617
HpyCH4V TGCA 8 cut(s) 208, 229, 309, 527, 563, 707, 727, 733
HpyF10VI GCNNNNNNNGC 4 cut(s) 619, 628, 713, 833
HpySE526I ACGT 4 cut(s) 339, 433, 593, 617
Hsp92I GRCGYC 2 cut(s) 593, 617
Hsp92II CATG 9 cut(s) 50, 67, 208, 253, 296, 309, 313, 416, 545
HspAI GCGC 1 cut(s) 836
KroI GCCGGC 1 cut(s) 673
KroNI GCCGGC 1 cut(s) 675
Kzo9I GATC 4 cut(s) 352, 395, 463, 544
Lsp1109I GCAGC 2 cut(s) 719, 774
LweI GCATC 7 cut(s) 72, 322, 448, 514, 536, 550, 796
MaeI CTAG 2 cut(s) 368, 862
MaeII ACGT 4 cut(s) 339, 433, 593, 617
MalI GATC 4 cut(s) 354, 397, 465, 546
MboI GATC 4 cut(s) 352, 395, 463, 544
MboII GAAGA 6 cut(s) 30, 94, 97, 170, 511, 569
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 2 cut(s) 352, 395
MlyI GAGTC 1 cut(s) 696
MmeI TCCRAC 2 cut(s) 510, 799
Mph1103I ATGCAT 2 cut(s) 311, 529
MroNI GCCGGC 1 cut(s) 673
MseI TTAA 4 cut(s) 75, 243, 300, 468
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 7 cut(s) 224, 655, 674, 693, 802, 813, 824
MspR9I CCNGG 3 cut(s) 224, 656, 803
MunI CAATTG 1 cut(s) 282
MwoI GCNNNNNNNGC 4 cut(s) 619, 628, 713, 833
NaeI GCCGGC 1 cut(s) 675
NciI CCSGG 3 cut(s) 224, 656, 803
NdeII GATC 4 cut(s) 352, 395, 463, 544
NgoMIV GCCGGC 1 cut(s) 673
NlaIII CATG 9 cut(s) 50, 67, 208, 253, 296, 309, 313, 416, 545
NlaIV GGNNCC 1 cut(s) 52
NsiI ATGCAT 2 cut(s) 311, 529
PaeR7I CTCGAG 1 cut(s) 626
PagI TCATGA 2 cut(s) 292, 541
PaqCI CACCTGC 1 cut(s) 724
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PdiI GCCGGC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 110, 509
PflMI CCANNNNNTGG 1 cut(s) 265
PfoI TCCNGGA 1 cut(s) 801
PkrI GCNGC 5 cut(s) 132, 672, 709, 789, 860
PleI GAGTC 1 cut(s) 695
PmaCI CACGTG 1 cut(s) 340
PmlI CACGTG 1 cut(s) 340
PpsI GAGTC 1 cut(s) 695
Ppu21I YACGTR 2 cut(s) 340, 434
PshBI ATTAAT 1 cut(s) 300
PsiI TTATAA 1 cut(s) 150
PspCI CACGTG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 52
PstI CTGCAG 1 cut(s) 729
PsuI RGATCY 2 cut(s) 352, 395
SalI GTCGAC 1 cut(s) 644
SaqAI TTAA 4 cut(s) 75, 243, 300, 468
SatI GCNGC 5 cut(s) 131, 671, 708, 788, 859
Sau3AI GATC 4 cut(s) 352, 395, 463, 544
SchI GAGTC 1 cut(s) 696
ScrFI CCNGG 3 cut(s) 224, 656, 803
SfaNI GCATC 7 cut(s) 72, 322, 448, 514, 536, 550, 796
SfcI CTRYAG 1 cut(s) 725
Sfr274I CTCGAG 1 cut(s) 626
SgrDI CGTCGACG 1 cut(s) 644
SlaI CTCGAG 1 cut(s) 626
SmlI CTYRAG 3 cut(s) 399, 467, 626
SmoI CTYRAG 3 cut(s) 399, 467, 626
SsiI CCGC 5 cut(s) 131, 597, 613, 671, 858
SspMI CTAG 2 cut(s) 368, 862
StyD4I CCNGG 3 cut(s) 222, 654, 801
TaaI ACNGT 1 cut(s) 843
TaiI ACGT 4 cut(s) 342, 436, 596, 620
TaqI TCGA 6 cut(s) 108, 141, 627, 645, 765, 781
TauI GCSGC 3 cut(s) 133, 673, 861
TfiI GAWTC 2 cut(s) 110, 509
Tru1I TTAA 4 cut(s) 75, 243, 300, 468
Tru9I TTAA 4 cut(s) 75, 243, 300, 468
TseI GCWGC 2 cut(s) 707, 787
TspDTI ATGAA 6 cut(s) 102, 183, 294, 309, 530, 574
TspGWI ACGGA 2 cut(s) 663, 671
Van91I CCANNNNNTGG 1 cut(s) 265
Vha464I CTTAAG 1 cut(s) 467
VspI ATTAAT 1 cut(s) 300
XapI RAATTY 1 cut(s) 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 626
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 2 cut(s) 368, 862
ZraI GACGTC 2 cut(s) 594, 618
Zsp2I ATGCAT 2 cut(s) 311, 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.