pycom01g00180

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
370768 .. 372278
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g00180.3

Sequence Viewer

Length: 1314 bp
ATGATGGACGAATTTGAAGGCCTTGTATGCTCTTTGGGACATAAAACAAAGGGCCTAGCCCAATCAAACAAACCTTTGAGCCATGCAAAACCTCTAGCCCAATCAAACAATGCATCACAAACCCAAAACCATCAAGAAACCATCCCTTGCCGTGCCTTCCACATCAATTCCAGCTTGTCTTCATCATTGCAGCCACTTTGCCCTTTTATTTATGCATTAAACCTATTTCCTTTCCCTAAATTGCAGCCACAATCCACACCTTTCCAACCTAGCTGCACCCTACATACATTAATTAGTCATTCTTTTCATATTGCACTCACATGCATTCACATGCATTTCAAGAACCAAAACAACATTGTGTCGTGCCTTCCCTTGCCATTTTCACCACATGTACACTCACCCATCCTCTCTAATCCGTGCATCACACCTTCATTTCTAGCACCAATTCCACATGCATTCCCACATGCATTTTCACCCACATGCACCTTAGAAATCATTCAAACATGCACCTACAATCATTCACTCAAGCACCCTTGTGCCTTGTTTCCCCCTTTTGTTCCCACCAATCACATGCATCATCATCATTCAACCAAGCCTAACCCGTGTATCCCCTCCTACATTCCACAAACAAGCCACATGCATTACACCCCACATGTCCCTTTAATCCTTCAAACATTCACCCCTTTCTCCACACCAAAACCGTGCATACACACTTCATTCCATTCATTCATCATCCCATCTCAGCCGCACCATTTATTCCACCCTAGAGCCTCATTATTCAATCTATCATTCATCACATGCAAAACAACAACCATTCCATGCAAAACAGCACCATTCACCCTTTGCCGTGGAATTCATTCCCCTTTCCAGCTTTCCCTTTCATTTCCAGCTCTAACTCTTCATCATTGCAGCCACCTACATACATTATTTATTAACTCTTCATCATGCAGCCAGAAAAGGAGCAAGAAAGCTTCCCACACACATGCAATTCCAACATCAAAAAACTGTCAATGCCGTGGGATCCTTGTGCTTTCCAGCTTTCCTAGCTGTTTTCCACCACATTCCAGCACATGCATCCCTTGCATTCCCATTACCAAGGCATCTCATTTCATACACAACACACCACCAAACTTCCTTTGCCGTGGCTTCCCATCTCTCCCTTATAATCCAAACACCATTCCTCTTCCATTTCAATCATTCCCCAATCCATTCAACACACCAACAACATCCCTTAGACCTTATGCTACAATAAAGAGGAAGAGAAGAGGGCCTAAACGTTCATACAATTCAAGTTTGAGTTGTTGGAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

438

Amino Acids

48.85

Weight (kDa)

9.48

Isoelectric Point (pI)

64.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1164
AciI CCGC 1 cut(s) 746
AclI AACGTT 1 cut(s) 1276
AclWI GGATC 2 cut(s) 1015, 1028
AcsI RAATTY 2 cut(s) 11, 852
AfaI GTAC 1 cut(s) 393
AflIII ACRYGT 2 cut(s) 388, 652
AgsI TTSAA 9 cut(s) 17, 340, 500, 588, 671, 781, 1193, 1213, 1290
AleI CACNNNNGTG 1 cut(s) 534
AluBI AGCT 7 cut(s) 174, 273, 871, 890, 971, 1038, 1047
AluI AGCT 7 cut(s) 174, 273, 871, 890, 971, 1038, 1047
AlwI GGATC 2 cut(s) 1015, 1028
AoxI GGCC 3 cut(s) 19, 52, 1268
ApeKI GCWGC 5 cut(s) 190, 244, 273, 909, 948
ApoI RAATTY 2 cut(s) 11, 852
AseI ATTAAT 1 cut(s) 290
Asp700I GAANNNNTTC 2 cut(s) 495, 856
AspS9I GGNCC 2 cut(s) 52, 1268
AsuHPI GGTGA 5 cut(s) 375, 390, 465, 670, 829
BaeI ACNNNNGTAYC 2 cut(s) 589, 622
BamHI GGATCC 1 cut(s) 1020
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 5 cut(s) 202, 256, 260, 921, 960
BccI CCATC 5 cut(s) 138, 149, 410, 745, 1159
BceAI ACGGC 4 cut(s) 135, 831, 999, 1125
BciVI GTATCC 1 cut(s) 617
BfaI CTAG 6 cut(s) 56, 95, 270, 437, 765, 1044
BfuI GTATCC 1 cut(s) 617
BisI GCNGC 6 cut(s) 191, 245, 274, 746, 910, 949
BlsI GCNGC 6 cut(s) 192, 246, 275, 747, 911, 950
BmgT120I GGNCC 2 cut(s) 52, 1268
BmiI GGNNCC 1 cut(s) 1022
BmsI GCATC 5 cut(s) 122, 429, 583, 1083, 1109
BpiI GAAGAC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 509
BsaJI CCNNGG 4 cut(s) 847, 1015, 1095, 1141
Bse3DI GCAATG 2 cut(s) 185, 904
BseDI CCNNGG 4 cut(s) 847, 1015, 1095, 1141
BseGI GGATG 5 cut(s) 141, 402, 732, 1074, 1226
BseMI GCAATG 2 cut(s) 185, 904
BseMII CTCAG 1 cut(s) 755
BseXI GCAGC 5 cut(s) 202, 256, 260, 921, 960
BsgI GTGCAG 1 cut(s) 259
BshFI GGCC 3 cut(s) 21, 54, 1270
BslFI GGGAC 2 cut(s) 51, 641
BsmFI GGGAC 2 cut(s) 51, 641
BsmI GAATGC 3 cut(s) 324, 455, 1083
BsnI GGCC 3 cut(s) 21, 54, 1270
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 1 cut(s) 1020
BspACI CCGC 1 cut(s) 746
BspANI GGCC 3 cut(s) 21, 54, 1270
BspCNI CTCAG 1 cut(s) 754
BspLI GGNNCC 1 cut(s) 1022
BspPI GGATC 2 cut(s) 1015, 1028
BsrDI GCAATG 2 cut(s) 185, 904
BsrGI TGTACA 1 cut(s) 391
BssECI CCNNGG 4 cut(s) 847, 1015, 1095, 1141
BssMI GATC 1 cut(s) 1020
BssT1I CCWWGG 1 cut(s) 1095
Bst4CI ACNGT 2 cut(s) 702, 1007
Bst6I CTCTTC 5 cut(s) 903, 943, 1188, 1253, 1258
BstAPI GCANNNNNTGC 1 cut(s) 1080
BstAUI TGTACA 1 cut(s) 391
BstDEI CTNAG 3 cut(s) 487, 741, 1232
BstDSI CCRYGG 3 cut(s) 847, 1015, 1141
BstF5I GGATG 5 cut(s) 141, 402, 732, 1074, 1226
BstKTI GATC 1 cut(s) 1023
BstMBI GATC 1 cut(s) 1020
BstMWI GCNNNNNNNGC 3 cut(s) 27, 1044, 1080
BstV1I GCAGC 5 cut(s) 202, 256, 260, 921, 960
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 1020
BstYI RGATCY 1 cut(s) 1020
BsuI GTATCC 1 cut(s) 617
BsuRI GGCC 3 cut(s) 21, 54, 1270
BtgI CCRYGG 3 cut(s) 847, 1015, 1141
BtsCI GGATG 5 cut(s) 141, 402, 732, 1074, 1226
Cfr13I GGNCC 2 cut(s) 52, 1268
Csp6I GTAC 1 cut(s) 392
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 3 cut(s) 487, 741, 1232
DpnI GATC 1 cut(s) 1022
DpnII GATC 1 cut(s) 1020
Eam1104I CTCTTC 5 cut(s) 903, 943, 1188, 1253, 1258
EarI CTCTTC 5 cut(s) 903, 943, 1188, 1253, 1258
Eco130I CCWWGG 1 cut(s) 1095
Eco147I AGGCCT 1 cut(s) 21
EcoO109I RGGNCCY 2 cut(s) 52, 1268
EcoRI GAATTC 1 cut(s) 852
EcoT14I CCWWGG 1 cut(s) 1095
EcoT22I ATGCAT 9 cut(s) 115, 217, 326, 336, 457, 469, 576, 642, 1076
ErhI CCWWGG 1 cut(s) 1095
FaqI GGGAC 2 cut(s) 51, 641
Fnu4HI GCNGC 6 cut(s) 191, 245, 274, 746, 910, 949
FokI GGATG 5 cut(s) 128, 389, 719, 1061, 1213
Fsp4HI GCNGC 6 cut(s) 191, 245, 274, 746, 910, 949
FspBI CTAG 6 cut(s) 56, 95, 270, 437, 765, 1044
GluI GCNGC 6 cut(s) 191, 245, 274, 746, 910, 949
HaeIII GGCC 3 cut(s) 21, 54, 1270
HindIII AAGCTT 1 cut(s) 969
HphI GGTGA 5 cut(s) 375, 390, 465, 670, 829
Hpy166II GTNNAC 1 cut(s) 394
Hpy188III TCNNGA 2 cut(s) 134, 340
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 5 cut(s) 11, 166, 377, 438, 677
HpyCH4III ACNGT 2 cut(s) 702, 1007
HpyCH4IV ACGT 1 cut(s) 1276
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 1044, 1080
HpyF3I CTNAG 3 cut(s) 487, 741, 1232
HpySE526I ACGT 1 cut(s) 1276
Kzo9I GATC 1 cut(s) 1020
LmnI GCTCC 1 cut(s) 960
LpnPI CCDG 6 cut(s) 184, 881, 900, 965, 1048, 1078
Lsp1109I GCAGC 5 cut(s) 202, 256, 260, 921, 960
LweI GCATC 5 cut(s) 122, 429, 583, 1083, 1109
MaeI CTAG 6 cut(s) 56, 95, 270, 437, 765, 1044
MaeII ACGT 1 cut(s) 1276
MalI GATC 1 cut(s) 1022
MboI GATC 1 cut(s) 1020
MboII GAAGA 6 cut(s) 171, 890, 930, 1175, 1270, 1275
MflI RGATCY 1 cut(s) 1020
MluCI AATT 8 cut(s) 11, 166, 239, 291, 444, 852, 987, 1285
MmeI TCCRAC 3 cut(s) 289, 1016, 1283
MnlI CCTC 7 cut(s) 102, 416, 622, 781, 1191, 1248, 1259
Mph1103I ATGCAT 9 cut(s) 115, 217, 326, 336, 457, 469, 576, 642, 1076
MroXI GAANNNNTTC 2 cut(s) 495, 856
MseI TTAA 4 cut(s) 218, 290, 662, 933
MslI CAYNNNNRTG 5 cut(s) 319, 329, 478, 534, 981
Mva1269I GAATGC 3 cut(s) 324, 455, 1083
MwoI GCNNNNNNNGC 3 cut(s) 27, 1044, 1080
NdeII GATC 1 cut(s) 1020
NlaIV GGNNCC 1 cut(s) 1022
NsiI ATGCAT 9 cut(s) 115, 217, 326, 336, 457, 469, 576, 642, 1076
OliI CACNNNNGTG 1 cut(s) 534
PceI AGGCCT 1 cut(s) 21
PciI ACATGT 2 cut(s) 388, 652
PctI GAATGC 3 cut(s) 324, 455, 1083
PdmI GAANNNNTTC 2 cut(s) 495, 856
PkrI GCNGC 6 cut(s) 192, 246, 275, 747, 911, 950
PscI ACATGT 2 cut(s) 388, 652
PshBI ATTAAT 1 cut(s) 290
PsiI TTATAA 1 cut(s) 1164
Psp1406I AACGTT 1 cut(s) 1276
PspN4I GGNNCC 1 cut(s) 1022
PspPI GGNCC 2 cut(s) 52, 1268
PsuI RGATCY 1 cut(s) 1020
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 5 cut(s) 319, 329, 478, 534, 981
SaqAI TTAA 4 cut(s) 218, 290, 662, 933
SatI GCNGC 6 cut(s) 191, 245, 274, 746, 910, 949
Sau3AI GATC 1 cut(s) 1020
Sau96I GGNCC 2 cut(s) 52, 1268
SfaNI GCATC 5 cut(s) 122, 429, 583, 1083, 1109
SmiMI CAYNNNNRTG 5 cut(s) 319, 329, 478, 534, 981
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 8 cut(s) 11, 166, 239, 291, 444, 852, 987, 1285
SseBI AGGCCT 1 cut(s) 21
SsiI CCGC 1 cut(s) 746
SspMI CTAG 6 cut(s) 56, 95, 270, 437, 765, 1044
StuI AGGCCT 1 cut(s) 21
StyI CCWWGG 1 cut(s) 1095
TaaI ACNGT 2 cut(s) 702, 1007
TaiI ACGT 1 cut(s) 1279
TasI AATT 8 cut(s) 11, 166, 239, 291, 444, 852, 987, 1285
TatI WGTACW 1 cut(s) 391
TauI GCSGC 1 cut(s) 748
Tru1I TTAA 4 cut(s) 218, 290, 662, 933
Tru9I TTAA 4 cut(s) 218, 290, 662, 933
TseI GCWGC 5 cut(s) 190, 244, 273, 909, 948
TspGWI ACGGA 1 cut(s) 405
VspI ATTAAT 1 cut(s) 290
XapI RAATTY 2 cut(s) 11, 852
XmnI GAANNNNTTC 2 cut(s) 495, 856
XspI CTAG 6 cut(s) 56, 95, 270, 437, 765, 1044
Zsp2I ATGCAT 9 cut(s) 115, 217, 326, 336, 457, 469, 576, 642, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.