pycom280g00040

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000280
Physical Location & Seq
Forward (+)
17227 .. 17841
615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom280g00040.2

Sequence Viewer

Length: 564 bp
ATGCATTCACACACCATCTTCCCTTTTACAAATACATTGCCGTGCCTTCCTTTCACAATTTCAGTTTTCCTCCTTTTAATTCCACATGCATTCACTTCATCATTACACCACCACTCATTCTTTAAATCCACATGCACATTCAATCATTCATTCAAGCCCCCTTGTGCCATGTTTCACCCTTTGTTCCCACCTATCACATGCATCATCATCAAACAAACTCTAATTGCCGTGGGTTCCCTTTGCTCCCCTTGTGCAATTCCAGTTTTCACATGTGTCCTAGCTGTTTTTCCATCATTCCTCCACACAAATCATTCATTCATTCACTCCCCATTCAATTCATATCTCATATTTCCATTCACAACACTTCACACAACACAAATACCATTCCATTGCCGTGAGTCCCATTCCATTTTCTGTGCAGTTTTTCTCCTTCATTGCAGCCACTATCCAACCACTTCCCATCCCTCCAAAACACTTCACATAATCCCCAAAGCTCACTTAGACCTTGTGCTACAACAACGAGGAAGAAAAGAGTGCCTAAACGTTCATACAATTCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.21

Weight (kDa)

8.84

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 543
AflIII ACRYGT 1 cut(s) 269
AgsI TTSAA 4 cut(s) 142, 154, 334, 557
AluBI AGCT 2 cut(s) 281, 494
AluI AGCT 2 cut(s) 281, 494
ApeKI GCWGC 1 cut(s) 438
AsuHPI GGTGA 1 cut(s) 167
BbvI GCAGC 1 cut(s) 450
BccI CCATC 3 cut(s) 23, 298, 468
BceAI ACGGC 3 cut(s) 25, 212, 378
BfaI CTAG 1 cut(s) 278
BisI GCNGC 1 cut(s) 439
BlsI GCNGC 1 cut(s) 440
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 260
Bse3DI GCAATG 3 cut(s) 35, 388, 433
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 460
BseMI GCAATG 3 cut(s) 35, 388, 433
BseNI ACTGG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 450
BsgI GTGCAG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 385
BsmI GAATGC 2 cut(s) 4, 89
BspLI GGNNCC 1 cut(s) 235
BsrDI GCAATG 3 cut(s) 35, 388, 433
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 499
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 460
BstNSI RCATGY 4 cut(s) 89, 135, 201, 273
BstV1I GCAGC 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 460
CviAII CATG 5 cut(s) 86, 132, 169, 198, 270
CviJI RGCY 4 cut(s) 157, 281, 441, 494
CviKI_1 RGCY 4 cut(s) 157, 281, 441, 494
DdeI CTNAG 1 cut(s) 499
DraI TTTAAA 1 cut(s) 124
EcoT22I ATGCAT 3 cut(s) 6, 91, 203
FaeI CATG 5 cut(s) 89, 135, 172, 201, 273
FaiI YATR 9 cut(s) 87, 133, 170, 199, 271, 340, 347, 482, 549
FaqI GGGAC 1 cut(s) 385
FatI CATG 5 cut(s) 85, 131, 168, 197, 269
Fnu4HI GCNGC 1 cut(s) 439
FokI GGATG 1 cut(s) 447
Fsp4HI GCNGC 1 cut(s) 439
FspBI CTAG 1 cut(s) 278
GluI GCNGC 1 cut(s) 439
Hin1II CATG 5 cut(s) 89, 135, 172, 201, 273
HinfI GANTC 1 cut(s) 398
HphI GGTGA 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 56, 440
HpyCH4IV ACGT 1 cut(s) 543
HpyCH4V TGCA 7 cut(s) 4, 89, 135, 201, 254, 419, 438
HpyF3I CTNAG 1 cut(s) 499
HpySE526I ACGT 1 cut(s) 543
Hsp92II CATG 5 cut(s) 89, 135, 172, 201, 273
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 1 cut(s) 273
Lsp1109I GCAGC 1 cut(s) 450
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 543
MboII GAAGA 2 cut(s) 10, 537
MluCI AATT 6 cut(s) 57, 78, 222, 255, 334, 552
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 473
MnlI CCTC 4 cut(s) 80, 308, 475, 515
Mph1103I ATGCAT 3 cut(s) 6, 91, 203
MseI TTAA 2 cut(s) 77, 123
MslI CAYNNNNRTG 2 cut(s) 40, 393
Mva1269I GAATGC 2 cut(s) 4, 89
NlaIII CATG 5 cut(s) 89, 135, 172, 201, 273
NlaIV GGNNCC 1 cut(s) 235
NsiI ATGCAT 3 cut(s) 6, 91, 203
NspI RCATGY 4 cut(s) 89, 135, 201, 273
PciI ACATGT 1 cut(s) 269
PctI GAATGC 2 cut(s) 4, 89
PkrI GCNGC 1 cut(s) 440
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PscI ACATGT 1 cut(s) 269
Psp1406I AACGTT 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 235
RseI CAYNNNNRTG 2 cut(s) 40, 393
SaqAI TTAA 2 cut(s) 77, 123
SatI GCNGC 1 cut(s) 439
SchI GAGTC 1 cut(s) 407
SetI ASST 5 cut(s) 193, 283, 496, 507, 546
SfaNI GCATC 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 40, 393
Sse9I AATT 6 cut(s) 57, 78, 222, 255, 334, 552
SspMI CTAG 1 cut(s) 278
TaiI ACGT 1 cut(s) 546
TasI AATT 6 cut(s) 57, 78, 222, 255, 334, 552
Tru1I TTAA 2 cut(s) 77, 123
Tru9I TTAA 2 cut(s) 77, 123
TseI GCWGC 1 cut(s) 438
TspDTI ATGAA 7 cut(s) 87, 138, 303, 307, 327, 422, 536
XceI RCATGY 4 cut(s) 89, 135, 201, 273
XspI CTAG 1 cut(s) 278
Zsp2I ATGCAT 3 cut(s) 6, 91, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.