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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 590 |
| AfaI | GTAC | 1 cut(s) | 208 |
| AgsI | TTSAA | 4 cut(s) | 89, 301, 512, 671 |
| AluBI | AGCT | 1 cut(s) | 216 |
| AluI | AGCT | 1 cut(s) | 216 |
| Alw21I | GWGCWC | 1 cut(s) | 245 |
| Alw26I | GTCTC | 1 cut(s) | 225 |
| ApeKI | GCWGC | 3 cut(s) | 406, 456, 519 |
| ApoI | RAATTY | 1 cut(s) | 590 |
| AseI | ATTAAT | 1 cut(s) | 368 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 321 |
| AsuHPI | GGTGA | 1 cut(s) | 601 |
| BbsI | GAAGAC | 1 cut(s) | 308 |
| Bbv12I | GWGCWC | 1 cut(s) | 245 |
| BbvI | GCAGC | 3 cut(s) | 418, 468, 531 |
| BccI | CCATC | 4 cut(s) | 253, 334, 354, 397 |
| BcoDI | GTCTC | 1 cut(s) | 225 |
| BfaI | CTAG | 1 cut(s) | 66 |
| BisI | GCNGC | 3 cut(s) | 407, 457, 520 |
| BlsI | GCNGC | 3 cut(s) | 408, 458, 521 |
| BmcAI | AGTACT | 1 cut(s) | 208 |
| BmiI | GGNNCC | 3 cut(s) | 105, 279, 318 |
| BmsI | GCATC | 1 cut(s) | 505 |
| BpiI | GAAGAC | 1 cut(s) | 308 |
| Bpu10I | CCTNAGC | 1 cut(s) | 254 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 269, 299, 515, 545 |
| Bse3DI | GCAATG | 3 cut(s) | 358, 401, 468 |
| BseGI | GGATG | 4 cut(s) | 264, 346, 389, 496 |
| BseMI | GCAATG | 3 cut(s) | 358, 401, 468 |
| BseXI | GCAGC | 3 cut(s) | 418, 468, 531 |
| BsiHKAI | GWGCWC | 1 cut(s) | 245 |
| BslFI | GGGAC | 1 cut(s) | 427 |
| BsmAI | GTCTC | 1 cut(s) | 225 |
| BsmFI | GGGAC | 1 cut(s) | 427 |
| BsmI | GAATGC | 2 cut(s) | 341, 383 |
| Bsp1286I | GDGCHC | 1 cut(s) | 245 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspLI | GGNNCC | 3 cut(s) | 105, 279, 318 |
| BsrDI | GCAATG | 3 cut(s) | 358, 401, 468 |
| BssMI | GATC | 1 cut(s) | 3 |
| Bst6I | CTCTTC | 3 cut(s) | 582, 634, 639 |
| BstDEI | CTNAG | 3 cut(s) | 32, 254, 613 |
| BstF5I | GGATG | 4 cut(s) | 264, 346, 389, 496 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMAI | GTCTC | 1 cut(s) | 225 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 456 |
| BstNSI | RCATGY | 8 cut(s) | 341, 383, 419, 429, 456, 479, 496, 519 |
| BstV1I | GCAGC | 3 cut(s) | 418, 468, 531 |
| BstV2I | GAAGAC | 1 cut(s) | 308 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 288, 313 |
| BtsCI | GGATG | 4 cut(s) | 264, 346, 389, 496 |
| Csp6I | GTAC | 1 cut(s) | 207 |
| CviQI | GTAC | 1 cut(s) | 207 |
| DdeI | CTNAG | 3 cut(s) | 32, 254, 613 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| DraI | TTTAAA | 1 cut(s) | 354 |
| Eam1104I | CTCTTC | 3 cut(s) | 582, 634, 639 |
| EarI | CTCTTC | 3 cut(s) | 582, 634, 639 |
| EcoRI | GAATTC | 1 cut(s) | 590 |
| EcoT22I | ATGCAT | 4 cut(s) | 343, 385, 431, 498 |
| FaqI | GGGAC | 1 cut(s) | 427 |
| FauNDI | CATATG | 1 cut(s) | 129 |
| Fnu4HI | GCNGC | 3 cut(s) | 407, 457, 520 |
| FokI | GGATG | 4 cut(s) | 271, 333, 376, 483 |
| Fsp4HI | GCNGC | 3 cut(s) | 407, 457, 520 |
| FspBI | CTAG | 1 cut(s) | 66 |
| GluI | GCNGC | 3 cut(s) | 407, 457, 520 |
| HphI | GGTGA | 1 cut(s) | 601 |
| Hpy188I | TCNGA | 2 cut(s) | 437, 589 |
| HpyCH4IV | ACGT | 1 cut(s) | 182 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 456 |
| HpyF3I | CTNAG | 3 cut(s) | 32, 254, 613 |
| HpySE526I | ACGT | 1 cut(s) | 182 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LmnI | GCTCC | 2 cut(s) | 240, 277 |
| Lsp1109I | GCAGC | 3 cut(s) | 418, 468, 531 |
| LweI | GCATC | 1 cut(s) | 505 |
| MaeI | CTAG | 1 cut(s) | 66 |
| MaeII | ACGT | 1 cut(s) | 182 |
| MaeIII | GTNAC | 1 cut(s) | 567 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MboII | GAAGA | 4 cut(s) | 313, 569, 651, 656 |
| MhlI | GDGCHC | 1 cut(s) | 245 |
| MluCI | AATT | 5 cut(s) | 296, 369, 480, 590, 666 |
| MmeI | TCCRAC | 3 cut(s) | 269, 294, 509 |
| MnlI | CCTC | 3 cut(s) | 541, 617, 629 |
| Mph1103I | ATGCAT | 4 cut(s) | 343, 385, 431, 498 |
| MroXI | GAANNNNTTC | 1 cut(s) | 321 |
| MseI | TTAA | 5 cut(s) | 212, 353, 368, 372, 503 |
| Mva1269I | GAATGC | 2 cut(s) | 341, 383 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 456 |
| NdeI | CATATG | 1 cut(s) | 129 |
| NdeII | GATC | 1 cut(s) | 3 |
| NlaIV | GGNNCC | 3 cut(s) | 105, 279, 318 |
| NmuCI | GTSAC | 1 cut(s) | 567 |
| NsiI | ATGCAT | 4 cut(s) | 343, 385, 431, 498 |
| NspI | RCATGY | 8 cut(s) | 341, 383, 419, 429, 456, 479, 496, 519 |
| PacI | TTAATTAA | 1 cut(s) | 372 |
| PctI | GAATGC | 2 cut(s) | 341, 383 |
| PdmI | GAANNNNTTC | 1 cut(s) | 321 |
| PkrI | GCNGC | 3 cut(s) | 408, 458, 521 |
| PshBI | ATTAAT | 1 cut(s) | 368 |
| PspN4I | GGNNCC | 3 cut(s) | 105, 279, 318 |
| RsaI | GTAC | 1 cut(s) | 208 |
| RsaNI | GTAC | 1 cut(s) | 207 |
| SaqAI | TTAA | 5 cut(s) | 212, 353, 368, 372, 503 |
| SatI | GCNGC | 3 cut(s) | 407, 457, 520 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| ScaI | AGTACT | 1 cut(s) | 208 |
| SduI | GDGCHC | 1 cut(s) | 245 |
| SetI | ASST | 6 cut(s) | 185, 218, 322, 609, 614, 621 |
| SfaNI | GCATC | 1 cut(s) | 505 |
| Sse9I | AATT | 5 cut(s) | 296, 369, 480, 590, 666 |
| SspMI | CTAG | 1 cut(s) | 66 |
| TaiI | ACGT | 1 cut(s) | 185 |
| TasI | AATT | 5 cut(s) | 296, 369, 480, 590, 666 |
| TatI | WGTACW | 1 cut(s) | 206 |
| Tru1I | TTAA | 5 cut(s) | 212, 353, 368, 372, 503 |
| Tru9I | TTAA | 5 cut(s) | 212, 353, 368, 372, 503 |
| TseFI | GTSAC | 1 cut(s) | 567 |
| TseI | GCWGC | 3 cut(s) | 406, 456, 519 |
| Tsp45I | GTSAC | 1 cut(s) | 567 |
| TspDTI | ATGAA | 7 cut(s) | 34, 73, 387, 457, 533, 543, 650 |
| VspI | ATTAAT | 1 cut(s) | 368 |
| XapI | RAATTY | 1 cut(s) | 590 |
| XceI | RCATGY | 8 cut(s) | 341, 383, 419, 429, 456, 479, 496, 519 |
| XmnI | GAANNNNTTC | 1 cut(s) | 321 |
| XspI | CTAG | 1 cut(s) | 66 |
| ZrmI | AGTACT | 1 cut(s) | 208 |
| Zsp2I | ATGCAT | 4 cut(s) | 343, 385, 431, 498 |