pycom1844g00120

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001844
Physical Location & Seq
Forward (+)
172157 .. 172879
723 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1844g00120.4

Sequence Viewer

Length: 531 bp
ATGTCACAAGGATTCCTACTTGAAGTAGCCACACACCTTCCACATTTCAGCCACATGCACTTGTTCCTCCATCATTTAACCCACATGCACCCTTTATTCTTTCATCATTCCAGCCACTCCACATCCCTCACCAAGAAATCATTCAACACATGCATCCATAATCATTTCTCCACACCAAAACCGTGCACATGCATTCCCCTTGTGCAATTCCATCATTCCACACCTCCATGGCAGCCACCAACCAACCTAGCTGTCATTCTAATCAGCCATTCACATTTAATCATCCATTCCCATCAGATTTCTAGCATATTCACATGCATTCATCCTAGCTCAGCCAACACATGCATCCACCTTTCTCCCATCAGATTTCCAACATTGCACATGCATTTCCACCCTTTAATCACATGCATAAATCAGCCACATGCATCTCCCATCACCATTCCAGATTTCCACCAAGTTCCTAGCTGTCATGTTCCCCCCATTTCACCTATAAATAAACCTTCATTGCAGCCACAAAGGGCCATTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.93

Weight (kDa)

8.82

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 23, 145
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 3 cut(s) 251, 330, 465
AluI AGCT 3 cut(s) 251, 330, 465
Alw21I GWGCWC 1 cut(s) 188
Alw44I GTGCAC 1 cut(s) 184
AoxI GGCC 1 cut(s) 519
ApaLI GTGCAC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 232, 508
Asp700I GAANNNNTTC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 121, 427, 477
BaeGI GKGCMC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 244, 520
BccI CCATC 5 cut(s) 78, 219, 300, 368, 440
BfaI CTAG 4 cut(s) 248, 303, 327, 462
BisI GCNGC 2 cut(s) 233, 509
BlpI GCTNAGC 1 cut(s) 331
BlsI GCNGC 2 cut(s) 234, 510
BmgT120I GGNCC 1 cut(s) 519
BmsI GCATC 3 cut(s) 162, 354, 434
Bpu1102I GCTNAGC 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 227
Bse3DI GCAATG 2 cut(s) 374, 503
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 5 cut(s) 122, 153, 282, 322, 345
BseMI GCAATG 2 cut(s) 374, 503
BseMII CTCAG 1 cut(s) 345
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 2 cut(s) 244, 520
BshFI GGCC 1 cut(s) 521
BsiHKAI GWGCWC 1 cut(s) 188
BsmI GAATGC 2 cut(s) 192, 318
BsnI GGCC 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 188
Bsp1720I GCTNAGC 1 cut(s) 331
Bsp19I CCATGG 1 cut(s) 227
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 344
BsrDI GCAATG 2 cut(s) 374, 503
BssECI CCNNGG 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 331
BstDSI CCRYGG 1 cut(s) 227
BstF5I GGATG 5 cut(s) 122, 153, 282, 322, 345
BstNSI RCATGY 9 cut(s) 58, 88, 153, 192, 318, 345, 385, 408, 425
BstSLI GKGCMC 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 244, 520
BsuRI GGCC 1 cut(s) 521
BtgI CCRYGG 1 cut(s) 227
BtsCI GGATG 5 cut(s) 122, 153, 282, 322, 345
Cfr13I GGNCC 1 cut(s) 519
DdeI CTNAG 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 227
EcoT22I ATGCAT 7 cut(s) 155, 194, 320, 347, 387, 410, 427
ErhI CCWWGG 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 233, 509
FokI GGATG 5 cut(s) 109, 140, 269, 309, 332
Fsp4HI GCNGC 2 cut(s) 233, 509
FspBI CTAG 4 cut(s) 248, 303, 327, 462
GluI GCNGC 2 cut(s) 233, 509
HaeIII GGCC 1 cut(s) 521
HinfI GANTC 1 cut(s) 12
HphI GGTGA 3 cut(s) 121, 427, 477
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 2 cut(s) 297, 365
Hpy188III TCNNGA 1 cut(s) 443
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 2 cut(s) 47, 510
HpyCH4III ACNGT 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 331
LpnPI CCDG 2 cut(s) 124, 456
Lsp1109I GCAGC 2 cut(s) 244, 520
LweI GCATC 3 cut(s) 162, 354, 434
MaeI CTAG 4 cut(s) 248, 303, 327, 462
MaeIII GTNAC 1 cut(s) 3
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 3 cut(s) 77, 137, 234
Mph1103I ATGCAT 7 cut(s) 155, 194, 320, 347, 387, 410, 427
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 3 cut(s) 77, 278, 398
MslI CAYNNNNRTG 1 cut(s) 226
Mva1269I GAATGC 2 cut(s) 192, 318
NcoI CCATGG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 7 cut(s) 155, 194, 320, 347, 387, 410, 427
NspI RCATGY 9 cut(s) 58, 88, 153, 192, 318, 345, 385, 408, 425
PctI GAATGC 2 cut(s) 192, 318
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 2 cut(s) 234, 510
PspPI GGNCC 1 cut(s) 519
RseI CAYNNNNRTG 1 cut(s) 226
SaqAI TTAA 3 cut(s) 77, 278, 398
SatI GCNGC 2 cut(s) 233, 509
Sau96I GGNCC 1 cut(s) 519
SduI GDGCHC 1 cut(s) 188
SetI ASST 9 cut(s) 39, 226, 249, 253, 332, 354, 467, 490, 502
SfaNI GCATC 3 cut(s) 162, 354, 434
SmiMI CAYNNNNRTG 1 cut(s) 226
Sse9I AATT 1 cut(s) 206
SspMI CTAG 4 cut(s) 248, 303, 327, 462
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 183
TasI AATT 1 cut(s) 206
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 3 cut(s) 77, 278, 398
Tru9I TTAA 3 cut(s) 77, 278, 398
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 232, 508
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 92, 311, 492
VneI GTGCAC 1 cut(s) 184
XceI RCATGY 9 cut(s) 58, 88, 153, 192, 318, 345, 385, 408, 425
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 4 cut(s) 248, 303, 327, 462
Zsp2I ATGCAT 7 cut(s) 155, 194, 320, 347, 387, 410, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.