pycom12426g00410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012426
OG0001078
Physical Location & Seq
Forward (+)
279769 .. 281021
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12426g00410.3

Sequence Viewer

Length: 975 bp
ATGTTTCTTTACAAAAATATGCATTTTGGAGACTTTTGGAGCACTTTTGGGCTAAGGATGGAAAGCCTATGCTTGGAGCCAAGGTGTTGGACGAAATTGAAGACCAAAGTGTTGGAACCTTTGCACATGCATCTCCATAAACCATCAACACATTCACACATCACCCATTCACCTTTGTGCCGTGACTTCACTCCTTCATCTCAGCCACACCTCACACATAATCATTCACACCTTGCATTCACATGCATTTCCAACCTAATCACTCACCCACACAATCTGCCATCATTCCAACCAAAACCGTGCACATGCTATCACCATGCATTCACATGCACTTGTTCCTCCATCATTCCATCCTTTAAAACATTGCACATGCAGCCACACATTCACCCACATGCATTTCCACCCACATGCTCTCCCATTTCAGATTACATTCCCCCTTTAATCAACACATGCATCCATAATCATTTCTACAACCTTGCCGTGCACTCCTATCCCATTTCAGATTGCATTTCATTCATTTCACATGCATTCCATCCTTTAATTCACTCACATACACTCATAATCATTCACATTTTCACATGCACACTCACCCTAATCATTCACATAGCTTTAATTCACATGCAAACACATTGCATTACCATTCACCACAGAAAAACACCATCATTGCCGAGCCTAATTCCCTTTGCATCCATTCCACATGCATTCACTTCATCATTGCAGCCACATTTCCACCCACATCCATTTAATTCACATTTGCAGAAAATCCACTTCCTTTGCACATGCATTCATCATCATCACTCTAGTTTTAATTCACATGCATTTCAGATTGCATTCCATTCATTCCACCCTTTAATCACATGCATAAACCAGCCACATGCATCTCCCATCATATCTTGGCATAAGTTTCATGCGTATTCCATAGTTACGAATGCCTCGTCAATACTTATAATTTTCATGATGCTTAATGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

37.29

Weight (kDa)

8.6

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 947
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 100
AleI CACNNNNGTG 1 cut(s) 175
AluBI AGCT 1 cut(s) 608
AluI AGCT 1 cut(s) 608
Alw21I GWGCWC 3 cut(s) 44, 305, 486
Alw26I GTCTC 1 cut(s) 24
Alw44I GTGCAC 2 cut(s) 301, 482
ApaLI GTGCAC 2 cut(s) 301, 482
ApeKI GCWGC 2 cut(s) 373, 718
ArsI GACNNNNNNTTYG 2 cut(s) 920, 952
AsuHPI GGTGA 7 cut(s) 154, 162, 257, 305, 377, 580, 635
BaeGI GKGCMC 2 cut(s) 305, 486
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 3 cut(s) 44, 305, 486
BbvI GCAGC 2 cut(s) 385, 730
BccI CCATC 8 cut(s) 52, 151, 289, 350, 358, 540, 667, 893
BceAI ACGGC 2 cut(s) 165, 464
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 801
BisI GCNGC 2 cut(s) 374, 719
BlsI GCNGC 2 cut(s) 375, 720
BmiI GGNNCC 2 cut(s) 78, 117
BmsI GCATC 5 cut(s) 139, 462, 695, 887, 948
BpiI GAAGAC 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 80
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 397, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse3DI GCAATG 4 cut(s) 362, 628, 662, 713
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 6 cut(s) 63, 350, 453, 532, 686, 736
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 4 cut(s) 362, 628, 662, 713
BseMII CTCAG 1 cut(s) 215
BseSI GKGCMC 2 cut(s) 305, 486
BseXI GCAGC 2 cut(s) 385, 730
BsiHKAI GWGCWC 3 cut(s) 44, 305, 486
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 24
BsmI GAATGC 7 cut(s) 236, 320, 527, 701, 783, 830, 934
Bsp1286I GDGCHC 3 cut(s) 44, 305, 486
Bsp143I GATC 1 cut(s) 967
BspCNI CTCAG 1 cut(s) 214
BspHI TCATGA 1 cut(s) 954
BspLI GGNNCC 2 cut(s) 78, 117
BsrDI GCAATG 4 cut(s) 362, 628, 662, 713
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 1 cut(s) 967
BssT1I CCWWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 53, 201
BstF5I GGATG 6 cut(s) 63, 350, 453, 532, 686, 736
BstKTI GATC 1 cut(s) 970
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 1 cut(s) 967
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstSLI GKGCMC 2 cut(s) 305, 486
BstV1I GCAGC 2 cut(s) 385, 730
BstV2I GAAGAC 1 cut(s) 107
BstXI CCANNNNNNTGG 2 cut(s) 87, 112
BtsCI GGATG 6 cut(s) 63, 350, 453, 532, 686, 736
CciI TCATGA 1 cut(s) 954
CspCI CAANNNNNGTGG 2 cut(s) 755, 790
CviJI RGCY 9 cut(s) 52, 66, 79, 205, 376, 608, 672, 721, 871
CviKI_1 RGCY 9 cut(s) 52, 66, 79, 205, 376, 608, 672, 721, 871
DdeI CTNAG 2 cut(s) 53, 201
DpnI GATC 1 cut(s) 969
DpnII GATC 1 cut(s) 967
DraI TTTAAA 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
Fnu4HI GCNGC 2 cut(s) 374, 719
FokI GGATG 6 cut(s) 70, 337, 440, 519, 673, 723
Fsp4HI GCNGC 2 cut(s) 374, 719
FspBI CTAG 1 cut(s) 801
GluI GCNGC 2 cut(s) 374, 719
HphI GGTGA 7 cut(s) 154, 162, 257, 305, 377, 580, 635
Hpy166II GTNNAC 2 cut(s) 303, 484
Hpy188I TCNGA 3 cut(s) 424, 502, 825
Hpy188III TCNNGA 1 cut(s) 955
Hpy8I GTNNAC 2 cut(s) 303, 484
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 2 cut(s) 53, 201
Kzo9I GATC 1 cut(s) 967
LmnI GCTCC 2 cut(s) 39, 76
LpnPI CCDG 1 cut(s) 881
Lsp1109I GCAGC 2 cut(s) 385, 730
LweI GCATC 5 cut(s) 139, 462, 695, 887, 948
MaeI CTAG 1 cut(s) 801
MaeIII GTNAC 2 cut(s) 182, 922
MalI GATC 1 cut(s) 969
MboI GATC 1 cut(s) 967
MboII GAAGA 1 cut(s) 112
MhlI GDGCHC 3 cut(s) 44, 305, 486
MluCI AATT 7 cut(s) 95, 540, 612, 675, 745, 808, 948
MmeI TCCRAC 4 cut(s) 68, 93, 276, 313
MnlI CCTC 3 cut(s) 221, 349, 943
MseI TTAA 8 cut(s) 357, 440, 539, 611, 744, 807, 851, 963
MslI CAYNNNNRTG 5 cut(s) 175, 241, 325, 390, 406
Mva1269I GAATGC 7 cut(s) 236, 320, 527, 701, 783, 830, 934
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 1 cut(s) 967
NlaIV GGNNCC 2 cut(s) 78, 117
NmeAIII GCCGAG 1 cut(s) 693
NmuCI GTSAC 1 cut(s) 182
OliI CACNNNNGTG 1 cut(s) 175
PagI TCATGA 1 cut(s) 954
PcsI WCGNNNNNNNCGW 1 cut(s) 932
PctI GAATGC 7 cut(s) 236, 320, 527, 701, 783, 830, 934
PkrI GCNGC 2 cut(s) 375, 720
PsiI TTATAA 1 cut(s) 947
PspN4I GGNNCC 2 cut(s) 78, 117
RseI CAYNNNNRTG 5 cut(s) 175, 241, 325, 390, 406
SaqAI TTAA 8 cut(s) 357, 440, 539, 611, 744, 807, 851, 963
SatI GCNGC 2 cut(s) 374, 719
Sau3AI GATC 1 cut(s) 967
SduI GDGCHC 3 cut(s) 44, 305, 486
SetI ASST 8 cut(s) 86, 121, 175, 213, 234, 258, 477, 610
SfaNI GCATC 5 cut(s) 139, 462, 695, 887, 948
SmiMI CAYNNNNRTG 5 cut(s) 175, 241, 325, 390, 406
Sse9I AATT 7 cut(s) 95, 540, 612, 675, 745, 808, 948
SspMI CTAG 1 cut(s) 801
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 300
TasI AATT 7 cut(s) 95, 540, 612, 675, 745, 808, 948
Tru1I TTAA 8 cut(s) 357, 440, 539, 611, 744, 807, 851, 963
Tru9I TTAA 8 cut(s) 357, 440, 539, 611, 744, 807, 851, 963
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 373, 718
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 8 cut(s) 186, 501, 505, 699, 776, 828, 896, 943
VneI GTGCAC 2 cut(s) 301, 482
XspI CTAG 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.