pycom1217g00030

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001217
Physical Location & Seq
Forward (+)
17287 .. 18261
975 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1217g00030.2

Sequence Viewer

Length: 813 bp
ATGCACTTTGGACATAAAACAAAGGGCCTAGCCCAATCAAACAATCCTTTGAGCCATGCAAAACCTCTAGCCCAATCAACAACCCTTAGCCACATGCATTTCCACCTTCCTACTTCATCATTTCATCATTTGCACCACCAATTCAACACATGCATTTCCACCTTCCTACTTCATCATTTCATCATTGCACCACCATTCACACACACATGCACTTACTCTTTCATCATTGCATCACAAATTCAACACATGCATTCACACACCAACAACCTAGCTCTTTTTCCATCATTATTTCATCCACATGCACTCTCAATCATAACAACCACATTCACTCTTAAACAATCACCCACATATTCTCCCATTCCCCCTATAAAAACCCATGCATTCATACACAAAAATCACATCTCATTTTCATACACAACACATCACAAACACATCCAATCTTCCCTCATTGCCTTGAGCTACCATTCCCTTATAATCCAAACACCACTCCTCATCCATTTCCATAATTCCCCAATCCATTCAACACACCAACAACATCCCTTAGACCTTGTACAATTCAAGTTTGAGTTGTTGGAATGTTTAGGTGTTTCTTTGATTCTCTTTGTTTTGTACCATGAGGAACTTCCTCTCGGCTTCATTCCATTAGATACACTCTCCCATTTCTTAAAGGATTTCGACATCAGTTTTGCTTCAAGGTTTTATGTCAAACCTTTTGTAAACATGAAGTATTGCCATGTAGTTAATTCGGAATTCTCATTTAATCTATCTATTTCTTGTTTCATTCTCCGATTTAATTATGACTTAGTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

31.14

Weight (kDa)

8.53

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AcsI RAATTY 2 cut(s) 237, 749
AfaI GTAC 2 cut(s) 552, 611
AgsI TTSAA 5 cut(s) 145, 242, 522, 559, 693
AluBI AGCT 2 cut(s) 272, 459
AluI AGCT 2 cut(s) 272, 459
AoxI GGCC 1 cut(s) 25
ApoI RAATTY 2 cut(s) 237, 749
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 333
BccI CCATC 1 cut(s) 289
BfaI CTAG 3 cut(s) 29, 68, 269
BmgT120I GGNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 475
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bse3DI GCAATG 3 cut(s) 183, 225, 447
BseGI GGATG 4 cut(s) 292, 432, 492, 535
BseMI GCAATG 3 cut(s) 183, 225, 447
BseRI GAGGAG 1 cut(s) 479
BshFI GGCC 1 cut(s) 27
BsmI GAATGC 2 cut(s) 250, 380
BsnI GGCC 1 cut(s) 27
Bsp1407I TGTACA 1 cut(s) 550
BspANI GGCC 1 cut(s) 27
BsrDI GCAATG 3 cut(s) 183, 225, 447
BsrGI TGTACA 1 cut(s) 550
BstAUI TGTACA 1 cut(s) 550
BstDEI CTNAG 3 cut(s) 86, 541, 802
BstF5I GGATG 4 cut(s) 292, 432, 492, 535
BstNSI RCATGY 5 cut(s) 97, 153, 210, 250, 302
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 4 cut(s) 292, 432, 492, 535
Cfr13I GGNCC 1 cut(s) 25
Csp6I GTAC 2 cut(s) 551, 610
CviJI RGCY 8 cut(s) 27, 32, 54, 71, 90, 272, 459, 633
CviKI_1 RGCY 8 cut(s) 27, 32, 54, 71, 90, 272, 459, 633
CviQI GTAC 2 cut(s) 551, 610
DdeI CTNAG 3 cut(s) 86, 541, 802
EcoO109I RGGNCCY 1 cut(s) 25
EcoRI GAATTC 1 cut(s) 749
EcoT22I ATGCAT 4 cut(s) 99, 155, 252, 382
FokI GGATG 4 cut(s) 279, 419, 479, 522
FspBI CTAG 3 cut(s) 29, 68, 269
HaeIII GGCC 1 cut(s) 27
HinfI GANTC 1 cut(s) 595
HphI GGTGA 1 cut(s) 333
Hpy166II GTNNAC 1 cut(s) 718
Hpy188I TCNGA 2 cut(s) 748, 788
Hpy8I GTNNAC 1 cut(s) 718
HpyAV CCTTC 2 cut(s) 116, 172
HpyF3I CTNAG 3 cut(s) 86, 541, 802
LweI GCATC 1 cut(s) 239
MaeI CTAG 3 cut(s) 29, 68, 269
MboII GAAGA 1 cut(s) 432
MluCI AATT 7 cut(s) 140, 237, 505, 554, 742, 749, 793
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 5 cut(s) 75, 455, 500, 610, 636
Mph1103I ATGCAT 4 cut(s) 99, 155, 252, 382
MseI TTAA 5 cut(s) 333, 665, 741, 759, 792
MslI CAYNNNNRTG 2 cut(s) 205, 297
Mva1269I GAATGC 2 cut(s) 250, 380
NmeAIII GCCGAG 1 cut(s) 609
NsiI ATGCAT 4 cut(s) 99, 155, 252, 382
NspI RCATGY 5 cut(s) 97, 153, 210, 250, 302
PctI GAATGC 2 cut(s) 250, 380
PfeI GAWTC 1 cut(s) 595
PsiI TTATAA 1 cut(s) 473
PspPI GGNCC 1 cut(s) 25
RsaI GTAC 2 cut(s) 552, 611
RsaNI GTAC 2 cut(s) 551, 610
RseI CAYNNNNRTG 2 cut(s) 205, 297
SaqAI TTAA 5 cut(s) 333, 665, 741, 759, 792
Sau96I GGNCC 1 cut(s) 25
SfaNI GCATC 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 205, 297
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 7 cut(s) 140, 237, 505, 554, 742, 749, 793
SspMI CTAG 3 cut(s) 29, 68, 269
TaqI TCGA 1 cut(s) 675
TasI AATT 7 cut(s) 140, 237, 505, 554, 742, 749, 793
TatI WGTACW 1 cut(s) 550
TfiI GAWTC 1 cut(s) 595
Tru1I TTAA 5 cut(s) 333, 665, 741, 759, 792
Tru9I TTAA 5 cut(s) 333, 665, 741, 759, 792
XapI RAATTY 2 cut(s) 237, 749
XceI RCATGY 5 cut(s) 97, 153, 210, 250, 302
XspI CTAG 3 cut(s) 29, 68, 269
Zsp2I ATGCAT 4 cut(s) 99, 155, 252, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.