pycom1880g00090

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001880
Physical Location & Seq
Forward (+)
94689 .. 95410
722 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1880g00090.3

Sequence Viewer

Length: 639 bp
ATGGCTAAGGAAGCAAAAAGATGCATTTTGGAGCATTTTGGAGCAAAATTGGACTTGGAATGGATATTGCAAGCTGTGAAAACAAGAAAAAAACGCTCAAAACACATGCCATATGTGGAAATACCATTTACATCAGATTTGAGCCATTTAACTTACCTTAAATACTTACCTTGTTTGTCATCCTCTCAGCCATATTTTAAATTCAAAACAAATACCATTCTCTTTGAATCAGATTCTTGCCTTTTATACACACTTCATTCCAGCCACTCCACATGCATTTCCAACCCACATGCACCTTTAATCATTCAACCATGCAGCCACACATTCACCCACATGCATTTCCACCCACATGCTCTCCCAATTCATCATTGCAGCCACATATCCATCCCACTTAATCATTTCAGTCACCAAAACACCCACATGCACTTCCCCCTTTCTTTAATCCATTGCAGCCACATGCAATTCCCACTCCAGATTTTCAGCCATCCCAATTCATCATTGCACATCAACATATTTCAGCACACTCCACATGCATTTCCACAATCACATTCACTTCATCATTGCACCACAAATCAGCCACACATTCACCCACATGCACCCTTTCATTTCTGTCAAAGCACATGCACTCCCACCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.55

Weight (kDa)

8.7

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 200
AgsI TTSAA 3 cut(s) 205, 227, 308
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
ApeKI GCWGC 3 cut(s) 315, 372, 450
ApoI RAATTY 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 319, 398, 578
BbvI GCAGC 3 cut(s) 327, 384, 462
BccI CCATC 2 cut(s) 392, 492
BisI GCNGC 3 cut(s) 316, 373, 451
BlsI GCNGC 3 cut(s) 317, 374, 452
BmsI GCATC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 455
Bpu10I CCTNAGC 1 cut(s) 6
BsaXI ACNNNNNCTCC 3 cut(s) 339, 369, 610
Bse3DI GCAATG 4 cut(s) 367, 445, 497, 559
BseGI GGATG 3 cut(s) 179, 384, 484
BseMI GCAATG 4 cut(s) 367, 445, 497, 559
BseMII CTCAG 1 cut(s) 200
BseXI GCAGC 3 cut(s) 327, 384, 462
BspCNI CTCAG 1 cut(s) 199
BsrDI GCAATG 4 cut(s) 367, 445, 497, 559
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 6, 186
BstF5I GGATG 3 cut(s) 179, 384, 484
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 327, 384, 462
BtsCI GGATG 3 cut(s) 179, 384, 484
Cac8I GCNNGC 1 cut(s) 72
DdeI CTNAG 2 cut(s) 6, 186
DraI TTTAAA 1 cut(s) 199
EcoT22I ATGCAT 4 cut(s) 26, 278, 339, 535
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 316, 373, 451
FokI GGATG 3 cut(s) 166, 371, 471
Fsp4HI GCNGC 3 cut(s) 316, 373, 451
GluI GCNGC 3 cut(s) 316, 373, 451
GsuI CTGGAG 1 cut(s) 455
HinfI GANTC 2 cut(s) 227, 233
HphI GGTGA 3 cut(s) 319, 398, 578
Hpy188I TCNGA 2 cut(s) 136, 232
Hpy188III TCNNGA 1 cut(s) 472
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 6, 186
LmnI GCTCC 2 cut(s) 31, 41
LpnPI CCDG 2 cut(s) 274, 485
Lsp1109I GCAGC 3 cut(s) 327, 384, 462
LweI GCATC 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 404
MluCI AATT 5 cut(s) 47, 200, 360, 461, 490
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 1 cut(s) 193
Mph1103I ATGCAT 4 cut(s) 26, 278, 339, 535
MseI TTAA 7 cut(s) 149, 159, 198, 299, 393, 440, 637
MslI CAYNNNNRTG 4 cut(s) 332, 348, 419, 591
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeI CATATG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 404
NsiI ATGCAT 4 cut(s) 26, 278, 339, 535
PfeI GAWTC 2 cut(s) 227, 233
PkrI GCNGC 3 cut(s) 317, 374, 452
RseI CAYNNNNRTG 4 cut(s) 332, 348, 419, 591
SaqAI TTAA 7 cut(s) 149, 159, 198, 299, 393, 440, 637
SatI GCNGC 3 cut(s) 316, 373, 451
SetI ASST 4 cut(s) 76, 159, 172, 298
SfaNI GCATC 1 cut(s) 11
SmiMI CAYNNNNRTG 4 cut(s) 332, 348, 419, 591
Sse9I AATT 5 cut(s) 47, 200, 360, 461, 490
TasI AATT 5 cut(s) 47, 200, 360, 461, 490
TfiI GAWTC 2 cut(s) 227, 233
Tru1I TTAA 7 cut(s) 149, 159, 198, 299, 393, 440, 637
Tru9I TTAA 7 cut(s) 149, 159, 198, 299, 393, 440, 637
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 3 cut(s) 315, 372, 450
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 5 cut(s) 245, 353, 483, 545, 593
XapI RAATTY 1 cut(s) 200
Zsp2I ATGCAT 4 cut(s) 26, 278, 339, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.