pycom05g08240

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
10923877 .. 10925040
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g08240.2

Sequence Viewer

Length: 885 bp
ATGCATTCACCCTTTAAACCATTAAATCCACATCTGTCATTCCACTTCATTGCACATGCATCTTCAAATAAATCAGCCATTCCACATGCATATTCAACCTATTACTCTTTAATTCACATGCAAAACATCCCATTCCATCTCCCATTTCAGATTGCATTCCATAATCATTCACTCACCTTTAATCCACATGCATCTTCCATAAATCAAATCAGCCACATTCACCACCACATTCACTCACCACAAACATTCCACATGCATTCATCAACATATCTAGTTGTCACTCACAAGCATTTCCTTCATCATTTCCAACCCACATGTCCCTTTAATCATTCAAACATACACCCATTCACCACCAGAAATCATCATTGCCATGAGTTCCCATCAGATTTCCATCATATTCACATTAAGCCACATGCACTCCCATCCATTCATCTCCCTATAAAAACCATACACACTTCACACAACATTCATTCATTCTCATTCACTCTTCCATATTCCAGAAATTCGTCAAAACCTCTCCACACCCTTGCAGCAGCCACCAAAACACTTTTCTCCTCCATTGCAGCCACTCCAACCACTCCCCAAACCATTCACACCATCAAACTATCCTTAGACCTTTTTGAGTTGTTGGAATGTTTAGGTGTTTCTTTGATTTCAATGTTTAATTTCAATACTCTTTGTTTTGTACGAATTAGGAATGGAAGAGAGGAGGGCCTAAACATACAATTCAAGTTTGAGTTGTTGGAATGTTTAGGTGGGGGAATTCGAAATATATGTTTATGCTTGCATTTTGATTTGATTACTTCTAATTTGATAACTTATTTATGTATGTTTATTGAGAGTGCACACTTAATTTTCATGCATGAATATGACGCTAGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

33.86

Weight (kDa)

8.44

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 502, 762
AfaI GTAC 1 cut(s) 687
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 6 cut(s) 66, 96, 333, 657, 670, 730
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
Alw21I GWGCWC 1 cut(s) 847
Alw44I GTGCAC 1 cut(s) 843
AoxI GGCC 1 cut(s) 712
ApaLI GTGCAC 1 cut(s) 843
ApeKI GCWGC 3 cut(s) 530, 533, 563
ApoI RAATTY 2 cut(s) 502, 762
AspS9I GGNCC 1 cut(s) 712
AsuHPI GGTGA 4 cut(s) 166, 212, 228, 340
AsuII TTCGAA 1 cut(s) 766
BaeGI GKGCMC 1 cut(s) 847
Bbv12I GWGCWC 1 cut(s) 847
BbvI GCAGC 3 cut(s) 542, 545, 575
BccI CCATC 5 cut(s) 144, 388, 399, 430, 605
BfaI CTAG 2 cut(s) 272, 876
BisI GCNGC 3 cut(s) 531, 534, 564
BlsI GCNGC 3 cut(s) 532, 535, 565
BmgT120I GGNCC 1 cut(s) 712
BmsI GCATC 2 cut(s) 68, 200
Bpu14I TTCGAA 1 cut(s) 766
BsaBI GATNNNNATC 1 cut(s) 390
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bse3DI GCAATG 3 cut(s) 48, 364, 558
Bse8I GATNNNNATC 1 cut(s) 390
BseGI GGATG 2 cut(s) 126, 422
BseJI GATNNNNATC 1 cut(s) 390
BseMI GCAATG 3 cut(s) 48, 364, 558
BseRI GAGGAG 2 cut(s) 544, 722
BseSI GKGCMC 1 cut(s) 847
BseXI GCAGC 3 cut(s) 542, 545, 575
BshFI GGCC 1 cut(s) 714
BsiHKAI GWGCWC 1 cut(s) 847
BslFI GGGAC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 303
BsmI GAATGC 3 cut(s) 4, 155, 256
BsnI GGCC 1 cut(s) 714
Bsp119I TTCGAA 1 cut(s) 766
Bsp1286I GDGCHC 1 cut(s) 847
BspANI GGCC 1 cut(s) 714
BspT104I TTCGAA 1 cut(s) 766
BsrDI GCAATG 3 cut(s) 48, 364, 558
Bst6I CTCTTC 2 cut(s) 492, 697
BstBI TTCGAA 1 cut(s) 766
BstC8I GCNNGC 1 cut(s) 785
BstDEI CTNAG 1 cut(s) 610
BstF5I GGATG 2 cut(s) 126, 422
BstNSI RCATGY 7 cut(s) 59, 89, 121, 191, 256, 318, 416
BstSLI GKGCMC 1 cut(s) 847
BstV1I GCAGC 3 cut(s) 542, 545, 575
BsuRI GGCC 1 cut(s) 714
BtsCI GGATG 2 cut(s) 126, 422
Cac8I GCNNGC 1 cut(s) 785
Cfr13I GGNCC 1 cut(s) 712
Csp6I GTAC 1 cut(s) 686
CviJI RGCY 6 cut(s) 77, 213, 409, 536, 566, 714
CviKI_1 RGCY 6 cut(s) 77, 213, 409, 536, 566, 714
CviQI GTAC 1 cut(s) 686
DdeI CTNAG 1 cut(s) 610
DraI TTTAAA 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 492, 697
EarI CTCTTC 2 cut(s) 492, 697
EcoO109I RGGNCCY 1 cut(s) 712
EcoRI GAATTC 1 cut(s) 762
EcoT22I ATGCAT 6 cut(s) 6, 61, 91, 193, 258, 864
FaqI GGGAC 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 531, 534, 564
FokI GGATG 2 cut(s) 113, 409
Fsp4HI GCNGC 3 cut(s) 531, 534, 564
FspBI CTAG 2 cut(s) 272, 876
GluI GCNGC 3 cut(s) 531, 534, 564
HaeIII GGCC 1 cut(s) 714
HphI GGTGA 4 cut(s) 166, 212, 228, 340
Hpy166II GTNNAC 1 cut(s) 845
Hpy188I TCNGA 2 cut(s) 150, 385
Hpy188III TCNNGA 1 cut(s) 498
Hpy8I GTNNAC 1 cut(s) 845
HpyAV CCTTC 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 610
LpnPI CCDG 2 cut(s) 367, 511
Lsp1109I GCAGC 3 cut(s) 542, 545, 575
LweI GCATC 2 cut(s) 68, 200
MaeI CTAG 2 cut(s) 272, 876
MaeIII GTNAC 1 cut(s) 277
MboII GAAGA 4 cut(s) 54, 186, 479, 714
MhlI GDGCHC 1 cut(s) 847
MluCI AATT 8 cut(s) 111, 502, 664, 690, 725, 762, 808, 852
MmeI TCCRAC 4 cut(s) 331, 596, 609, 723
MnlI CCTC 4 cut(s) 525, 565, 700, 703
Mph1103I ATGCAT 6 cut(s) 6, 61, 91, 193, 258, 864
MseI TTAA 8 cut(s) 15, 23, 110, 180, 324, 405, 663, 851
MslI CAYNNNNRTG 2 cut(s) 369, 867
Mva1269I GAATGC 3 cut(s) 4, 155, 256
NmuCI GTSAC 1 cut(s) 277
NsiI ATGCAT 6 cut(s) 6, 61, 91, 193, 258, 864
NspI RCATGY 7 cut(s) 59, 89, 121, 191, 256, 318, 416
NspV TTCGAA 1 cut(s) 766
PciI ACATGT 1 cut(s) 314
PctI GAATGC 3 cut(s) 4, 155, 256
PkrI GCNGC 3 cut(s) 532, 535, 565
PscI ACATGT 1 cut(s) 314
PspPI GGNCC 1 cut(s) 712
RsaI GTAC 1 cut(s) 687
RsaNI GTAC 1 cut(s) 686
RseI CAYNNNNRTG 2 cut(s) 369, 867
SaqAI TTAA 8 cut(s) 15, 23, 110, 180, 324, 405, 663, 851
SatI GCNGC 3 cut(s) 531, 534, 564
Sau96I GGNCC 1 cut(s) 712
SduI GDGCHC 1 cut(s) 847
SetI ASST 6 cut(s) 101, 179, 517, 618, 643, 757
SfaNI GCATC 2 cut(s) 68, 200
SfuI TTCGAA 1 cut(s) 766
SmiMI CAYNNNNRTG 2 cut(s) 369, 867
Sse9I AATT 8 cut(s) 111, 502, 664, 690, 725, 762, 808, 852
SspMI CTAG 2 cut(s) 272, 876
TaqI TCGA 1 cut(s) 766
TasI AATT 8 cut(s) 111, 502, 664, 690, 725, 762, 808, 852
Tru1I TTAA 8 cut(s) 15, 23, 110, 180, 324, 405, 663, 851
Tru9I TTAA 8 cut(s) 15, 23, 110, 180, 324, 405, 663, 851
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 3 cut(s) 530, 533, 563
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 8 cut(s) 37, 249, 287, 419, 458, 462, 847, 879
VneI GTGCAC 1 cut(s) 843
XapI RAATTY 2 cut(s) 502, 762
XceI RCATGY 7 cut(s) 59, 89, 121, 191, 256, 318, 416
XspI CTAG 2 cut(s) 272, 876
Zsp2I ATGCAT 6 cut(s) 6, 61, 91, 193, 258, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.