pycom12426g00280

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012426
Physical Location & Seq
Forward (+)
145053 .. 145680
628 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12426g00280.3

Sequence Viewer

Length: 528 bp
ATGCTTGGAGCCAAAGTGTTGGACGAAATTGAAGACCTAATTGAAGACCAAAGTGTTGGAACCTTGTTCCCTTTATCCAACATTCCACTCCTTCATTTCAGCCACACTCCCACATATCATTACTTATCATTCACCACTTATCATATCATTCACTTATCATATCATTCACTTATCATATCATACACTTATCATAACCATACACTTATCACTTATCACAACAACAACCTTGCACATGCACATTCATCCACATGCACCCATAATCATTCACTCATCTTTAATCCACATGCATCTTCCATAAATCAAATCAGCCACATCCACATGCACTTATTCCACTTCATCATTACACCACATTCTCTCTCTTTAATCCACATGCATTCATCATCATTCACTCTAGTTTTAATTTCCACATGCATTTCCACCCACATCTGTCATTCCACTTCATTGCACATGCATCTTCAAATAAATCAGATTTCCATCATATTCACATGCATTCCATCCTTTAAAACATTGGACATGCACTCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.03

Weight (kDa)

6.58

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 32, 44, 458
AsuHPI GGTGA 1 cut(s) 124
BbsI GAAGAC 2 cut(s) 39, 51
BccI CCATC 2 cut(s) 482, 502
BfaI CTAG 1 cut(s) 392
BmiI GGNNCC 2 cut(s) 10, 61
BmsI GCATC 2 cut(s) 296, 460
BpiI GAAGAC 2 cut(s) 39, 51
BsaBI GATNNNNATC 1 cut(s) 473
BsaXI ACNNNNNCTCC 2 cut(s) 30, 503
Bse3DI GCAATG 1 cut(s) 440
Bse8I GATNNNNATC 1 cut(s) 473
BseGI GGATG 3 cut(s) 242, 312, 494
BseJI GATNNNNATC 1 cut(s) 473
BseMI GCAATG 1 cut(s) 440
BsmI GAATGC 2 cut(s) 373, 489
BspLI GGNNCC 2 cut(s) 10, 61
BsrDI GCAATG 1 cut(s) 440
BstF5I GGATG 3 cut(s) 242, 312, 494
BstNSI RCATGY 9 cut(s) 236, 252, 287, 322, 373, 411, 451, 489, 517
BstV2I GAAGAC 2 cut(s) 39, 51
BstXI CCANNNNNNTGG 2 cut(s) 19, 56
BtsCI GGATG 3 cut(s) 242, 312, 494
CviAII CATG 9 cut(s) 233, 249, 284, 319, 370, 408, 448, 486, 514
CviJI RGCY 3 cut(s) 11, 102, 309
CviKI_1 RGCY 3 cut(s) 11, 102, 309
DraI TTTAAA 1 cut(s) 502
EcoT22I ATGCAT 5 cut(s) 289, 375, 413, 453, 491
FaeI CATG 9 cut(s) 236, 252, 287, 322, 373, 411, 451, 489, 517
FatI CATG 9 cut(s) 232, 248, 283, 318, 369, 407, 447, 485, 513
FokI GGATG 3 cut(s) 229, 299, 481
FspBI CTAG 1 cut(s) 392
Hin1II CATG 9 cut(s) 236, 252, 287, 322, 373, 411, 451, 489, 517
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 468
HpyAV CCTTC 1 cut(s) 101
Hsp92II CATG 9 cut(s) 236, 252, 287, 322, 373, 411, 451, 489, 517
LmnI GCTCC 1 cut(s) 8
LweI GCATC 2 cut(s) 296, 460
MaeI CTAG 1 cut(s) 392
MboII GAAGA 4 cut(s) 44, 56, 282, 446
MluCI AATT 3 cut(s) 27, 39, 399
MmeI TCCRAC 2 cut(s) 37, 102
Mph1103I ATGCAT 5 cut(s) 289, 375, 413, 453, 491
MseI TTAA 5 cut(s) 276, 362, 398, 501, 526
MslI CAYNNNNRTG 2 cut(s) 247, 317
Mva1269I GAATGC 2 cut(s) 373, 489
NlaIII CATG 9 cut(s) 236, 252, 287, 322, 373, 411, 451, 489, 517
NlaIV GGNNCC 2 cut(s) 10, 61
NsiI ATGCAT 5 cut(s) 289, 375, 413, 453, 491
NspI RCATGY 9 cut(s) 236, 252, 287, 322, 373, 411, 451, 489, 517
PctI GAATGC 2 cut(s) 373, 489
PspN4I GGNNCC 2 cut(s) 10, 61
RseI CAYNNNNRTG 2 cut(s) 247, 317
SaqAI TTAA 5 cut(s) 276, 362, 398, 501, 526
SetI ASST 3 cut(s) 39, 65, 228
SfaNI GCATC 2 cut(s) 296, 460
SmiMI CAYNNNNRTG 2 cut(s) 247, 317
Sse9I AATT 3 cut(s) 27, 39, 399
SspMI CTAG 1 cut(s) 392
TasI AATT 3 cut(s) 27, 39, 399
Tru1I TTAA 5 cut(s) 276, 362, 398, 501, 526
Tru9I TTAA 5 cut(s) 276, 362, 398, 501, 526
TspDTI ATGAA 5 cut(s) 83, 231, 325, 366, 429
XceI RCATGY 9 cut(s) 236, 252, 287, 322, 373, 411, 451, 489, 517
XspI CTAG 1 cut(s) 392
Zsp2I ATGCAT 5 cut(s) 289, 375, 413, 453, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.