pycom520g01130

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_520
Physical Location & Seq
Forward (+)
822629 .. 824001
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom520g01130.2

Sequence Viewer

Length: 1167 bp
ATGCACTTAAACCCTAGCCCTTTAACCTTGCAGCCCCATTCTATCATTTCACATCATAACCTAGCTGTCATTCCACATGCACATTCATCATCCCTTTTTCCCATCATTTGCCGTGCATTTCCATGCATTTCCCACATTTCAGCCACATGCACTTATTCCTCCATCATTGCACCACATTGCAGCCACATGCACACCCATTCACCCTTTGCCGTGCATTACCCCCTTGCATTCCAGCCATCCCACTTCATCATTGCAGCCACCATTCACCTTTTTCTCCCAAAACCGTGCACATGCATTCCCCTTGTGCAATTCCAGCTTTCCACAACCAACCTAGCTGTCATTGCACATGCATTCATCATCATTCACCCTACCTTGCAATTCCACATTCACTCCCCTTGTCGTAGCCTCCCTTTGCATTCACATGCATCCACTTCATCATTTCAGCACATTATCTTCCACCATTCACTCTTTAATCCACATGCATTCATCATCATTCACCCTAGCTTTAATTCACATGCTTTCACATGCATTTTCAGCACCAAAGAAGCCATTGTCGTGCACATTCACCTTCATTTCCAGGTTGTCCACTTAATCATTGCAGCCACATATTCAACTTCCCTTCATTGCCGTGCAAAACACCTTCATTCCAGCCAATTCACATGTCTTTCCAACCTAGACACATCCACATGCACCCATAATCATTCACTCACCTTGCAGCCACATCTGTCACTCACATGCATTTCATTCATTATTTCAGCCACATATCCTCCCATTCTCCCTATAAAACCATGCATTCCCTCACCAACAAGGAGAGCTTTGTGTCCATTCAATCACACAACACACGGCACAAAAACAAACCATTTGTGCCGTGCCTTCATTCCACATTTCAGCCATTCCACCACTCCCCATCCATTCATACACAAAACCTATCATTCTACATCATCCATAATCCCCAAAAATCACCTTAGACCTTGTGAAGCAACAAAGAGGAAGAGAAGAGGGCCTAAACGTTCATACAATTCAAGTTTGAGTTGTTGGAATGGGGGGATTCGAAATATATGTTTATGCTTGCAATTTGAATTGATTACATTTGGTTGGAATTTCATAAGTTGTGAATTCAATTTGTTTAACCGTTTGATTGATAACTTATTTATGTATGTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

43.88

Weight (kDa)

9.28

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 1009
AcsI RAATTY 2 cut(s) 1099, 1115
AflIII ACRYGT 1 cut(s) 659
AgsI TTSAA 5 cut(s) 612, 829, 1023, 1079, 1120
AjnI CCWGG 1 cut(s) 576
AluBI AGCT 5 cut(s) 65, 316, 335, 504, 815
AluI AGCT 5 cut(s) 65, 316, 335, 504, 815
Alw21I GWGCWC 2 cut(s) 290, 561
Alw44I GTGCAC 2 cut(s) 286, 557
AoxI GGCC 1 cut(s) 1001
ApaLI GTGCAC 2 cut(s) 286, 557
ApeKI GCWGC 5 cut(s) 31, 180, 254, 599, 715
ApoI RAATTY 2 cut(s) 1099, 1115
AspS9I GGNCC 1 cut(s) 1001
AsuHPI GGTGA 8 cut(s) 192, 257, 356, 488, 557, 700, 792, 953
AsuII TTCGAA 1 cut(s) 1051
BaeGI GKGCMC 2 cut(s) 290, 561
Bbv12I GWGCWC 2 cut(s) 290, 561
BbvI GCAGC 5 cut(s) 43, 192, 266, 611, 727
BccI CCATC 4 cut(s) 110, 170, 244, 915
BceAI ACGGC 5 cut(s) 96, 194, 612, 852, 859
BciT130I CCWGG 1 cut(s) 578
BfaI CTAG 5 cut(s) 15, 62, 332, 501, 674
BisI GCNGC 5 cut(s) 32, 181, 255, 600, 716
BlsI GCNGC 5 cut(s) 33, 182, 256, 601, 717
Bme1390I CCNGG 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 1001
BmrFI CCNGG 1 cut(s) 578
BmsI GCATC 1 cut(s) 434
Bpu14I TTCGAA 1 cut(s) 1051
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 751, 781
Bse3DI GCAATG 6 cut(s) 165, 175, 249, 339, 594, 622
BseBI CCWGG 1 cut(s) 578
BseGI GGATG 6 cut(s) 89, 236, 425, 680, 907, 941
BseMI GCAATG 6 cut(s) 165, 175, 249, 339, 594, 622
BseSI GKGCMC 2 cut(s) 290, 561
BseXI GCAGC 5 cut(s) 43, 192, 266, 611, 727
BshFI GGCC 1 cut(s) 1003
BsiHKAI GWGCWC 2 cut(s) 290, 561
BsmI GAATGC 6 cut(s) 227, 294, 350, 415, 482, 792
BsnI GGCC 1 cut(s) 1003
Bsp119I TTCGAA 1 cut(s) 1051
Bsp1286I GDGCHC 2 cut(s) 290, 561
BspANI GGCC 1 cut(s) 1003
BspT104I TTCGAA 1 cut(s) 1051
BsrDI GCAATG 6 cut(s) 165, 175, 249, 339, 594, 622
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 2 cut(s) 285, 1133
Bst6I CTCTTC 2 cut(s) 986, 991
BstBI TTCGAA 1 cut(s) 1051
BstC8I GCNNGC 1 cut(s) 1070
BstDEI CTNAG 1 cut(s) 965
BstF5I GGATG 6 cut(s) 89, 236, 425, 680, 907, 941
BstMWI GCNNNNNNNGC 3 cut(s) 313, 341, 534
BstNI CCWGG 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 576
BstSLI GKGCMC 2 cut(s) 290, 561
BstV1I GCAGC 5 cut(s) 43, 192, 266, 611, 727
BsuRI GGCC 1 cut(s) 1003
BtsCI GGATG 6 cut(s) 89, 236, 425, 680, 907, 941
Cac8I GCNNGC 1 cut(s) 1070
Cfr13I GGNCC 1 cut(s) 1001
DdeI CTNAG 1 cut(s) 965
Eam1104I CTCTTC 2 cut(s) 986, 991
EarI CTCTTC 2 cut(s) 986, 991
EcoO109I RGGNCCY 1 cut(s) 1001
EcoRI GAATTC 1 cut(s) 1115
EcoRII CCWGG 1 cut(s) 576
EcoT22I ATGCAT 8 cut(s) 128, 296, 352, 427, 484, 530, 740, 794
FalI AAGNNNNNCTT 2 cut(s) 799, 831
Fnu4HI GCNGC 5 cut(s) 32, 181, 255, 600, 716
FokI GGATG 6 cut(s) 76, 223, 412, 667, 894, 928
Fsp4HI GCNGC 5 cut(s) 32, 181, 255, 600, 716
FspBI CTAG 5 cut(s) 15, 62, 332, 501, 674
GluI GCNGC 5 cut(s) 32, 181, 255, 600, 716
HaeIII GGCC 1 cut(s) 1003
HinfI GANTC 1 cut(s) 1048
HphI GGTGA 8 cut(s) 192, 257, 356, 488, 557, 700, 792, 953
Hpy166II GTNNAC 3 cut(s) 288, 559, 586
Hpy8I GTNNAC 3 cut(s) 288, 559, 586
HpyAV CCTTC 4 cut(s) 578, 629, 650, 883
HpyCH4III ACNGT 2 cut(s) 285, 1133
HpyCH4IV ACGT 1 cut(s) 1009
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 341, 534
HpyF3I CTNAG 1 cut(s) 965
HpySE526I ACGT 1 cut(s) 1009
LpnPI CCDG 5 cut(s) 245, 326, 563, 590, 661
Lsp1109I GCAGC 5 cut(s) 43, 192, 266, 611, 727
LweI GCATC 1 cut(s) 434
MaeI CTAG 5 cut(s) 15, 62, 332, 501, 674
MaeII ACGT 1 cut(s) 1009
MaeIII GTNAC 1 cut(s) 726
MboII GAAGA 3 cut(s) 445, 1003, 1008
MhlI GDGCHC 2 cut(s) 290, 561
MmeI TCCRAC 3 cut(s) 693, 1016, 1076
MnlI CCTC 6 cut(s) 169, 416, 777, 808, 981, 992
Mph1103I ATGCAT 8 cut(s) 128, 296, 352, 427, 484, 530, 740, 794
MseI TTAA 6 cut(s) 8, 23, 471, 507, 590, 1128
MslI CAYNNNNRTG 6 cut(s) 121, 420, 554, 627, 685, 733
MspR9I CCNGG 1 cut(s) 578
Mva1269I GAATGC 6 cut(s) 227, 294, 350, 415, 482, 792
MvaI CCWGG 1 cut(s) 578
MwoI GCNNNNNNNGC 3 cut(s) 313, 341, 534
NmuCI GTSAC 1 cut(s) 726
NsiI ATGCAT 8 cut(s) 128, 296, 352, 427, 484, 530, 740, 794
NspV TTCGAA 1 cut(s) 1051
PciI ACATGT 1 cut(s) 659
PctI GAATGC 6 cut(s) 227, 294, 350, 415, 482, 792
PfeI GAWTC 1 cut(s) 1048
PkrI GCNGC 5 cut(s) 33, 182, 256, 601, 717
PscI ACATGT 1 cut(s) 659
Psp1406I AACGTT 1 cut(s) 1009
Psp6I CCWGG 1 cut(s) 576
PspGI CCWGG 1 cut(s) 576
PspPI GGNCC 1 cut(s) 1001
RseI CAYNNNNRTG 6 cut(s) 121, 420, 554, 627, 685, 733
SaqAI TTAA 6 cut(s) 8, 23, 471, 507, 590, 1128
SatI GCNGC 5 cut(s) 32, 181, 255, 600, 716
Sau96I GGNCC 1 cut(s) 1001
ScrFI CCNGG 1 cut(s) 578
SduI GDGCHC 2 cut(s) 290, 561
SfaNI GCATC 1 cut(s) 434
SfuI TTCGAA 1 cut(s) 1051
SmiMI CAYNNNNRTG 6 cut(s) 121, 420, 554, 627, 685, 733
SspMI CTAG 5 cut(s) 15, 62, 332, 501, 674
StyD4I CCNGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 285, 1133
TaiI ACGT 1 cut(s) 1012
TaqI TCGA 1 cut(s) 1051
TfiI GAWTC 1 cut(s) 1048
Tru1I TTAA 6 cut(s) 8, 23, 471, 507, 590, 1128
Tru9I TTAA 6 cut(s) 8, 23, 471, 507, 590, 1128
TseFI GTSAC 1 cut(s) 726
TseI GCWGC 5 cut(s) 31, 180, 254, 599, 715
Tsp45I GTSAC 1 cut(s) 726
VneI GTGCAC 2 cut(s) 286, 557
XapI RAATTY 2 cut(s) 1099, 1115
XspI CTAG 5 cut(s) 15, 62, 332, 501, 674
Zsp2I ATGCAT 8 cut(s) 128, 296, 352, 427, 484, 530, 740, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.