pycom01g02680

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
2186380 .. 2187259
880 bp
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UTR
Exon/CDS
Intron
pycom01g02680.2

Sequence Viewer

Length: 777 bp
ATGCCGTGCATTTCCAACCTAATCACTCACCCACACAATCTACCATCATTCCAACCAAAACCGTGCACATGCTATCACCATGCATTCACATGCACTTGTTCCTCCATCATTCCATCCTTTAATTCACTCACACTCACCCTAATCATTCACATAGCTTTAATTCACATGCAAACACATTGCATTACCATTCACCACAGAAAAACACCATCATTGCCGAGCCACATTTCCACTCACATCCATTTAATTCACATGCTTTCACATGCATTTTCAGATTGCATTCCATTCATTCCACCCTTTAATCACATGCATTCCATCTTTGTTCCAGCAACCCACATGCACAATCCACTCCACAAACATCCTATGCCGTGCACATTCATACACTTTCACATGCATCTTGGCAGATTTCACATGCACACACATGCATTTCCAGCTCATCCACCACTCATGCTGTGCACAACCCATACCATTCCAGCATTTTCACATGCTTTCCTAGCTGTCATTGGTCCCTTGGGGCCGTGCCCTTCACAAAAACCAATCCATTCCATTCAAACACTCATCCATTGCAGAAATGTAGACATCAAACCACCCTTGTGCCATGCCTTTCCCTACAAATCCAAACACCATCCTTCCATCTCCACACTTCCTCTTCCATTCCTCCACCACTCCCCAAACCATTCACACCATCAAACTATCCCTAGACCTTGTGCTACAACGAAGAGGAAGATAAGAGGGCCTAAACGTTCATACAATTCAAGTTTGAGTTGTTGGAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.29

Weight (kDa)

9.52

Isoelectric Point (pI)

63.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 573
AclI AACGTT 1 cut(s) 739
AgsI TTSAA 2 cut(s) 548, 753
AleI CACNNNNGTG 1 cut(s) 589
AluBI AGCT 3 cut(s) 155, 431, 494
AluI AGCT 3 cut(s) 155, 431, 494
Alw21I GWGCWC 3 cut(s) 68, 371, 455
Alw44I GTGCAC 3 cut(s) 64, 367, 451
AoxI GGCC 2 cut(s) 512, 731
ApaLI GTGCAC 3 cut(s) 64, 367, 451
AspS9I GGNCC 3 cut(s) 503, 512, 731
AsuHPI GGTGA 4 cut(s) 20, 68, 127, 182
AvaII GGWCC 1 cut(s) 503
BaeGI GKGCMC 4 cut(s) 68, 371, 455, 521
Bbv12I GWGCWC 3 cut(s) 68, 371, 455
BccI CCATC 8 cut(s) 52, 113, 121, 214, 320, 630, 638, 690
BceAI ACGGC 2 cut(s) 349, 499
BfaI CTAG 2 cut(s) 491, 696
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 3 cut(s) 503, 512, 731
BmiI GGNNCC 2 cut(s) 505, 513
BmsI GCATC 1 cut(s) 400
BsaJI CCNNGG 1 cut(s) 507
Bse3DI GCAATG 3 cut(s) 175, 209, 559
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 6 cut(s) 113, 234, 355, 433, 555, 622
BseMI GCAATG 3 cut(s) 175, 209, 559
BseSI GKGCMC 4 cut(s) 68, 371, 455, 521
BshFI GGCC 2 cut(s) 514, 733
BsiHKAI GWGCWC 3 cut(s) 68, 371, 455
BslFI GGGAC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 489
BsmI GAATGC 3 cut(s) 83, 276, 307
BsnI GGCC 2 cut(s) 514, 733
Bsp1286I GDGCHC 4 cut(s) 68, 371, 455, 521
BspANI GGCC 2 cut(s) 514, 733
BspLI GGNNCC 2 cut(s) 505, 513
BsrDI GCAATG 3 cut(s) 175, 209, 559
BssECI CCNNGG 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 63
Bst6I CTCTTC 2 cut(s) 651, 710
BstF5I GGATG 6 cut(s) 113, 234, 355, 433, 555, 622
BstMWI GCNNNNNNNGC 2 cut(s) 428, 491
BstSLI GKGCMC 4 cut(s) 68, 371, 455, 521
BsuRI GGCC 2 cut(s) 514, 733
BtsCI GGATG 6 cut(s) 113, 234, 355, 433, 555, 622
Cfr13I GGNCC 3 cut(s) 503, 512, 731
CviJI RGCY 6 cut(s) 155, 219, 431, 494, 514, 733
CviKI_1 RGCY 6 cut(s) 155, 219, 431, 494, 514, 733
Eam1104I CTCTTC 2 cut(s) 651, 710
EarI CTCTTC 2 cut(s) 651, 710
Eco130I CCWWGG 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 503
EcoO109I RGGNCCY 1 cut(s) 731
EcoT14I CCWWGG 1 cut(s) 507
EcoT22I ATGCAT 5 cut(s) 85, 265, 309, 393, 424
ErhI CCWWGG 1 cut(s) 507
FaqI GGGAC 1 cut(s) 489
FblI GTMKAC 1 cut(s) 573
FokI GGATG 6 cut(s) 100, 221, 342, 420, 542, 609
FspBI CTAG 2 cut(s) 491, 696
HaeIII GGCC 2 cut(s) 514, 733
HphI GGTGA 4 cut(s) 20, 68, 127, 182
Hpy166II GTNNAC 4 cut(s) 66, 369, 453, 574
Hpy188I TCNGA 1 cut(s) 271
Hpy8I GTNNAC 4 cut(s) 66, 369, 453, 574
HpyAV CCTTC 2 cut(s) 531, 636
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 739
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 491
HpySE526I ACGT 1 cut(s) 739
LpnPI CCDG 3 cut(s) 336, 441, 483
LweI GCATC 1 cut(s) 400
MaeI CTAG 2 cut(s) 491, 696
MaeII ACGT 1 cut(s) 739
MboII GAAGA 3 cut(s) 638, 727, 733
MhlI GDGCHC 4 cut(s) 68, 371, 455, 521
MluCI AATT 4 cut(s) 121, 159, 243, 748
MmeI TCCRAC 3 cut(s) 39, 76, 746
MnlI CCTC 5 cut(s) 112, 654, 665, 711, 722
Mph1103I ATGCAT 5 cut(s) 85, 265, 309, 393, 424
MseI TTAA 4 cut(s) 120, 158, 242, 297
MslI CAYNNNNRTG 3 cut(s) 88, 417, 589
Mva1269I GAATGC 3 cut(s) 83, 276, 307
MwoI GCNNNNNNNGC 2 cut(s) 428, 491
NlaIV GGNNCC 2 cut(s) 505, 513
NmeAIII GCCGAG 1 cut(s) 240
NsiI ATGCAT 5 cut(s) 85, 265, 309, 393, 424
OliI CACNNNNGTG 1 cut(s) 589
PctI GAATGC 3 cut(s) 83, 276, 307
Psp1406I AACGTT 1 cut(s) 739
PspN4I GGNNCC 2 cut(s) 505, 513
PspPI GGNCC 3 cut(s) 503, 512, 731
RseI CAYNNNNRTG 3 cut(s) 88, 417, 589
SaqAI TTAA 4 cut(s) 120, 158, 242, 297
Sau96I GGNCC 3 cut(s) 503, 512, 731
SduI GDGCHC 4 cut(s) 68, 371, 455, 521
SetI ASST 6 cut(s) 21, 157, 433, 496, 703, 742
SfaNI GCATC 1 cut(s) 400
SinI GGWCC 1 cut(s) 503
SmiMI CAYNNNNRTG 3 cut(s) 88, 417, 589
Sse9I AATT 4 cut(s) 121, 159, 243, 748
SspMI CTAG 2 cut(s) 491, 696
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 1 cut(s) 63
TaiI ACGT 1 cut(s) 742
TasI AATT 4 cut(s) 121, 159, 243, 748
Tru1I TTAA 4 cut(s) 120, 158, 242, 297
Tru9I TTAA 4 cut(s) 120, 158, 242, 297
TspDTI ATGAA 3 cut(s) 274, 364, 732
VneI GTGCAC 3 cut(s) 64, 367, 451
VpaK11BI GGWCC 1 cut(s) 503
XmiI GTMKAC 1 cut(s) 573
XspI CTAG 2 cut(s) 491, 696
Zsp2I ATGCAT 5 cut(s) 85, 265, 309, 393, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.