pycom2246g00140

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002246
Physical Location & Seq
Forward (+)
27530 .. 28521
992 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom2246g00140.2

Sequence Viewer

Length: 681 bp
ATGATGCAATTTGGAGCTTTTGGAGCAAAACTGAGCTGGAATGTGGTGTACGCAAATAGAGCACGAGGAATGAACGTCCAAAACTATGCATCACACAATCTTCCTCCTAACCAAAACCGTGCATTAATCAGCCACCATAATTCCATAACCCTAATATTCTATTCCCTAATTCGGAGCACCCATTCATGCCATTTTATTATCTATTCCATCACCCTAATATGCCATTATACCTTCCCACTAAACCCCCCCCATTTAACAAAAGAAAAGTTTCAATCACTCCATTATAATACTCCCATTATTCATTCATTAATCCACCCAAAACCGTGCAAACCATCTCTCCACTTCCCATTAATCGTCCACTTCTCATTATCCATTATCCATGCATTATATACCTATCACTCATTCATGTTTAGGAGGAGAGGAATCCGCACCATAATCTCATTTTCCATTGTAATACACAAACATTTCCCCTTCTCCATTTTCTCCATTTCCACTCCATTCCACACTTCCATCCCATCAACCAACCTATCCTTAAACCTTGTGCTACAACAACGAGGAAGAGAAGAGTTTCAAAGATATGAGGAACTAAACCCCCTTTATACTTTTGGTTGGAATTTCATAAGTTGTGGATTCAATTCGTTTAACTGTTTGATGGATAACGTATTTATGTATGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

26.46

Weight (kDa)

9.71

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AciI CCGC 1 cut(s) 427
AcsI RAATTY 1 cut(s) 613
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 3 cut(s) 272, 572, 634
AluBI AGCT 2 cut(s) 17, 36
AluI AGCT 2 cut(s) 17, 36
Alw21I GWGCWC 2 cut(s) 64, 179
ApoI RAATTY 1 cut(s) 613
AseI ATTAAT 3 cut(s) 125, 308, 350
Asp700I GAANNNNTTC 2 cut(s) 267, 567
AsuHPI GGTGA 1 cut(s) 202
BauI CACGAG 1 cut(s) 63
Bbv12I GWGCWC 2 cut(s) 64, 179
BccI CCATC 5 cut(s) 215, 340, 518, 523, 646
BmsI GCATC 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 430
BsiHKAI GWGCWC 2 cut(s) 64, 179
BslI CCNNNNNNNGG 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 64, 179
BspACI CCGC 1 cut(s) 427
BspCNI CTCAG 1 cut(s) 24
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst4CI ACNGT 3 cut(s) 119, 324, 647
Bst6I CTCTTC 2 cut(s) 553, 558
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 510
BstMWI GCNNNNNNNGC 2 cut(s) 23, 59
BtsCI GGATG 1 cut(s) 510
Csp6I GTAC 1 cut(s) 49
CviAII CATG 3 cut(s) 186, 380, 406
CviJI RGCY 3 cut(s) 17, 36, 132
CviKI_1 RGCY 3 cut(s) 17, 36, 132
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 32
Eam1104I CTCTTC 2 cut(s) 553, 558
EarI CTCTTC 2 cut(s) 553, 558
EcoT22I ATGCAT 2 cut(s) 91, 385
FaeI CATG 3 cut(s) 189, 383, 409
FatI CATG 3 cut(s) 185, 379, 405
FokI GGATG 1 cut(s) 497
Hin1II CATG 3 cut(s) 189, 383, 409
HinfI GANTC 2 cut(s) 423, 630
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 49, 358
Hpy188I TCNGA 1 cut(s) 174
Hpy8I GTNNAC 2 cut(s) 49, 358
HpyAV CCTTC 2 cut(s) 241, 481
HpyCH4III ACNGT 3 cut(s) 119, 324, 647
HpyCH4IV ACGT 2 cut(s) 75, 660
HpyCH4V TGCA 5 cut(s) 7, 89, 122, 327, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 59
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 2 cut(s) 75, 660
Hsp92II CATG 3 cut(s) 189, 383, 409
LmnI GCTCC 3 cut(s) 14, 23, 174
LpnPI CCDG 1 cut(s) 22
LweI GCATC 1 cut(s) 98
MaeII ACGT 2 cut(s) 75, 660
MboII GAAGA 3 cut(s) 92, 570, 575
MhlI GDGCHC 2 cut(s) 64, 179
MluCI AATT 5 cut(s) 8, 139, 168, 613, 634
MmeI TCCRAC 1 cut(s) 590
MnlI CCTC 6 cut(s) 59, 114, 408, 413, 548, 574
Mph1103I ATGCAT 2 cut(s) 91, 385
MroXI GAANNNNTTC 2 cut(s) 267, 567
MseI TTAA 6 cut(s) 125, 254, 308, 350, 533, 642
MwoI GCNNNNNNNGC 2 cut(s) 23, 59
NlaIII CATG 3 cut(s) 189, 383, 409
NsiI ATGCAT 2 cut(s) 91, 385
PdmI GAANNNNTTC 2 cut(s) 267, 567
PfeI GAWTC 2 cut(s) 423, 630
PshBI ATTAAT 3 cut(s) 125, 308, 350
PsiI TTATAA 1 cut(s) 285
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 6 cut(s) 125, 254, 308, 350, 533, 642
SduI GDGCHC 2 cut(s) 64, 179
SetI ASST 8 cut(s) 19, 38, 78, 233, 395, 528, 540, 663
SfaNI GCATC 1 cut(s) 98
Sse9I AATT 5 cut(s) 8, 139, 168, 613, 634
SsiI CCGC 1 cut(s) 427
SspI AATATT 1 cut(s) 156
TaaI ACNGT 3 cut(s) 119, 324, 647
TaiI ACGT 2 cut(s) 78, 663
TasI AATT 5 cut(s) 8, 139, 168, 613, 634
TfiI GAWTC 2 cut(s) 423, 630
Tru1I TTAA 6 cut(s) 125, 254, 308, 350, 533, 642
Tru9I TTAA 6 cut(s) 125, 254, 308, 350, 533, 642
TspDTI ATGAA 7 cut(s) 86, 174, 290, 294, 394, 607, 665
VspI ATTAAT 3 cut(s) 125, 308, 350
XapI RAATTY 1 cut(s) 613
XmnI GAANNNNTTC 2 cut(s) 267, 567
Zsp2I ATGCAT 2 cut(s) 91, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.