pycom17g17480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001078
Physical Location & Seq
Forward (+)
15168676 .. 15169772
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g17480.5

Sequence Viewer

Length: 909 bp
ATGCATTTCTTTATTCACTCTTCATCACATGCATTTTCACCACCATTCGCACACACATGCATCCTGAAAACCTTGTGCCGTGTATCCCCTTCAACTTTCCATCCACATACACTCATCATCACACACCCTAGCTATCATTCACATGCATTCACATGCATCACAACCCCAAAACCATCAAGAAAACACCCTTGCCGTGGCCTTCACTCACACTTCCAGCTTTCCACCTTGCATTTCCAGATTATTCCTTCATCATTGCATCCATTCCACATGCATTCTTCATCATTGCACCACAAATCAGCTCATCCCACACTCCATGCCGTGGCCTACCTCCCATTTCCAGCTTTCACATGCCTTCAAATGCATTTCCAGCACATCCTTTGCTTTACATCTCCACAAACACATGCATTTACACCCAAAAATCCCCTTTGCCGTGGGATCCTTGTGCTTTCCAGCTTTCCTAGCTGTTTTCCACCACATTTCAGAACATGCATGCTTAAACAAACATCCCATTACCAAATCATCTCATTTTTCATACACAACACACCACAAACACATCCATTCTTCCTTTGTGCCGTGAGCTCCCATTCCCTTATAATCCAAACACCACTCCTCATCCATTTCCATAATCCCCCAAACCTCACCTTAGACCTTGTACAATTCAAGTATGAGTTGTTGGAATGTTTAGGTGTTTCTTTGATTTCAAAGTTTAAATTCAATTCTCTTTGTTTTGTACATATGAGGAATGGAAGAGAAGAATGCCTAAACGTTCATACAATTCAACTAGGAGGTGATTCGAAACTATGTTTATGTTTGCAATATGAATTGATTAACTTTCGTTGGAATTTCATAAGTTGTGGATTCAATTTGTTTAACCGTTTGATTGATAACTTATTTATGAATGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

34.81

Weight (kDa)

9.05

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
AccB7I CCANNNNNTGG 1 cut(s) 319
AclI AACGTT 1 cut(s) 765
AclWI GGATC 2 cut(s) 430, 443
AcsI RAATTY 2 cut(s) 710, 841
AfaI GTAC 2 cut(s) 654, 732
AfiI CCNNNNNNNGG 2 cut(s) 194, 319
AgsI TTSAA 7 cut(s) 93, 356, 661, 702, 715, 779, 862
AluBI AGCT 7 cut(s) 132, 217, 299, 341, 453, 462, 579
AluI AGCT 7 cut(s) 132, 217, 299, 341, 453, 462, 579
Alw21I GWGCWC 1 cut(s) 581
AlwI GGATC 2 cut(s) 430, 443
AoxI GGCC 2 cut(s) 196, 321
ApoI RAATTY 2 cut(s) 710, 841
AsuHPI GGTGA 3 cut(s) 30, 631, 800
AsuII TTCGAA 1 cut(s) 794
BamHI GGATCC 1 cut(s) 435
BanII GRGCYC 1 cut(s) 581
Bbv12I GWGCWC 1 cut(s) 581
BccI CCATC 2 cut(s) 108, 181
BceAI ACGGC 5 cut(s) 63, 177, 302, 414, 557
BciVI GTATCC 1 cut(s) 94
BfaI CTAG 3 cut(s) 129, 459, 782
BfuI GTATCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 437
BmsI GCATC 3 cut(s) 69, 165, 265
Bpu14I TTCGAA 1 cut(s) 794
BsaJI CCNNGG 3 cut(s) 193, 318, 430
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 319
Bse3DI GCAATG 2 cut(s) 251, 281
BseDI CCNNGG 3 cut(s) 193, 318, 430
BseGI GGATG 8 cut(s) 60, 100, 256, 301, 372, 503, 553, 612
BseLI CCNNNNNNNGG 2 cut(s) 194, 319
BseMI GCAATG 2 cut(s) 251, 281
BseRI GAGGAG 1 cut(s) 599
BshFI GGCC 2 cut(s) 198, 323
BsiHKAI GWGCWC 1 cut(s) 581
BslI CCNNNNNNNGG 2 cut(s) 194, 319
BsmI GAATGC 3 cut(s) 146, 271, 761
BsnI GGCC 2 cut(s) 198, 323
Bsp119I TTCGAA 1 cut(s) 794
Bsp1286I GDGCHC 1 cut(s) 581
Bsp1407I TGTACA 2 cut(s) 652, 730
Bsp143I GATC 1 cut(s) 435
BspANI GGCC 2 cut(s) 198, 323
BspLI GGNNCC 1 cut(s) 437
BspPI GGATC 2 cut(s) 430, 443
BspT104I TTCGAA 1 cut(s) 794
BsrDI GCAATG 2 cut(s) 251, 281
BsrGI TGTACA 2 cut(s) 652, 730
BssECI CCNNGG 3 cut(s) 193, 318, 430
BssMI GATC 1 cut(s) 435
Bst4CI ACNGT 1 cut(s) 875
Bst6I CTCTTC 2 cut(s) 25, 742
BstAUI TGTACA 2 cut(s) 652, 730
BstBI TTCGAA 1 cut(s) 794
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 1 cut(s) 643
BstDSI CCRYGG 3 cut(s) 193, 318, 430
BstF5I GGATG 8 cut(s) 60, 100, 256, 301, 372, 503, 553, 612
BstKTI GATC 1 cut(s) 438
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 2 cut(s) 367, 459
BstNSI RCATGY 9 cut(s) 32, 60, 146, 156, 271, 351, 404, 489, 493
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 198, 323
BtgI CCRYGG 3 cut(s) 193, 318, 430
BtsCI GGATG 8 cut(s) 60, 100, 256, 301, 372, 503, 553, 612
Cac8I GCNNGC 1 cut(s) 491
Csp6I GTAC 2 cut(s) 653, 731
CviJI RGCY 9 cut(s) 132, 198, 217, 299, 323, 341, 453, 462, 579
CviKI_1 RGCY 9 cut(s) 132, 198, 217, 299, 323, 341, 453, 462, 579
CviQI GTAC 2 cut(s) 653, 731
DdeI CTNAG 1 cut(s) 643
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
DraI TTTAAA 1 cut(s) 709
Eam1104I CTCTTC 2 cut(s) 25, 742
EarI CTCTTC 2 cut(s) 25, 742
Ecl136II GAGCTC 1 cut(s) 579
Eco24I GRGCYC 1 cut(s) 581
Eco53kI GAGCTC 1 cut(s) 579
EcoICRI GAGCTC 1 cut(s) 579
EcoT22I ATGCAT 9 cut(s) 6, 34, 62, 148, 158, 273, 363, 406, 491
EcoT38I GRGCYC 1 cut(s) 581
FauNDI CATATG 1 cut(s) 735
FokI GGATG 8 cut(s) 47, 87, 243, 288, 359, 490, 540, 599
FriOI GRGCYC 1 cut(s) 581
FspBI CTAG 3 cut(s) 129, 459, 782
HaeIII GGCC 2 cut(s) 198, 323
HinfI GANTC 2 cut(s) 791, 858
HphI GGTGA 3 cut(s) 30, 631, 800
Hpy188I TCNGA 1 cut(s) 482
Hpy188III TCNNGA 3 cut(s) 64, 177, 235
HpyAV CCTTC 4 cut(s) 99, 209, 255, 362
HpyCH4III ACNGT 1 cut(s) 875
HpyCH4IV ACGT 1 cut(s) 765
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 459
HpyF3I CTNAG 1 cut(s) 643
HpySE526I ACGT 1 cut(s) 765
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 584
LpnPI CCDG 6 cut(s) 77, 227, 248, 351, 380, 463
LweI GCATC 3 cut(s) 69, 165, 265
MaeI CTAG 3 cut(s) 129, 459, 782
MaeII ACGT 1 cut(s) 765
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 5 cut(s) 12, 267, 553, 759, 764
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 581
MluCI AATT 7 cut(s) 656, 710, 715, 774, 821, 841, 862
MmeI TCCRAC 2 cut(s) 654, 818
MnlI CCTC 5 cut(s) 338, 620, 647, 732, 779
Mph1103I ATGCAT 9 cut(s) 6, 34, 62, 148, 158, 273, 363, 406, 491
MseI TTAA 5 cut(s) 495, 708, 828, 870, 907
MslI CAYNNNNRTG 3 cut(s) 55, 141, 151
Mva1269I GAATGC 3 cut(s) 146, 271, 761
MwoI GCNNNNNNNGC 2 cut(s) 367, 459
NdeI CATATG 1 cut(s) 735
NdeII GATC 1 cut(s) 435
NlaIV GGNNCC 1 cut(s) 437
NsiI ATGCAT 9 cut(s) 6, 34, 62, 148, 158, 273, 363, 406, 491
NspI RCATGY 9 cut(s) 32, 60, 146, 156, 271, 351, 404, 489, 493
NspV TTCGAA 1 cut(s) 794
PaeI GCATGC 1 cut(s) 493
PctI GAATGC 3 cut(s) 146, 271, 761
PfeI GAWTC 2 cut(s) 791, 858
PflMI CCANNNNNTGG 1 cut(s) 319
PsiI TTATAA 1 cut(s) 593
Psp124BI GAGCTC 1 cut(s) 581
Psp1406I AACGTT 1 cut(s) 765
PspN4I GGNNCC 1 cut(s) 437
PsuI RGATCY 1 cut(s) 435
RsaI GTAC 2 cut(s) 654, 732
RsaNI GTAC 2 cut(s) 653, 731
RseI CAYNNNNRTG 3 cut(s) 55, 141, 151
SacI GAGCTC 1 cut(s) 581
SaqAI TTAA 5 cut(s) 495, 708, 828, 870, 907
Sau3AI GATC 1 cut(s) 435
SduI GDGCHC 1 cut(s) 581
SfaNI GCATC 3 cut(s) 69, 165, 265
SfuI TTCGAA 1 cut(s) 794
SmiMI CAYNNNNRTG 3 cut(s) 55, 141, 151
SphI GCATGC 1 cut(s) 493
Sse9I AATT 7 cut(s) 656, 710, 715, 774, 821, 841, 862
SspMI CTAG 3 cut(s) 129, 459, 782
SstI GAGCTC 1 cut(s) 581
TaaI ACNGT 1 cut(s) 875
TaiI ACGT 1 cut(s) 768
TaqI TCGA 1 cut(s) 794
TasI AATT 7 cut(s) 656, 710, 715, 774, 821, 841, 862
TatI WGTACW 2 cut(s) 652, 730
TfiI GAWTC 2 cut(s) 791, 858
Tru1I TTAA 5 cut(s) 495, 708, 828, 870, 907
Tru9I TTAA 5 cut(s) 495, 708, 828, 870, 907
TspDTI ATGAA 7 cut(s) 12, 237, 267, 520, 758, 834, 835
Van91I CCANNNNNTGG 1 cut(s) 319
XapI RAATTY 2 cut(s) 710, 841
XceI RCATGY 9 cut(s) 32, 60, 146, 156, 271, 351, 404, 489, 493
XspI CTAG 3 cut(s) 129, 459, 782
Zsp2I ATGCAT 9 cut(s) 6, 34, 62, 148, 158, 273, 363, 406, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.