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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 896 |
| AciI | CCGC | 2 cut(s) | 1002, 1101 |
| AclI | AACGTT | 1 cut(s) | 397 |
| AclWI | GGATC | 1 cut(s) | 918 |
| AcsI | RAATTY | 1 cut(s) | 560 |
| AflIII | ACRYGT | 1 cut(s) | 1040 |
| AgsI | TTSAA | 8 cut(s) | 36, 72, 107, 334, 411, 504, 1070, 1274 |
| AluBI | AGCT | 2 cut(s) | 137, 779 |
| AluI | AGCT | 2 cut(s) | 137, 779 |
| Alw21I | GWGCWC | 1 cut(s) | 681 |
| Alw44I | GTGCAC | 1 cut(s) | 677 |
| AlwI | GGATC | 1 cut(s) | 918 |
| AoxI | GGCC | 2 cut(s) | 389, 1031 |
| ApaLI | GTGCAC | 1 cut(s) | 677 |
| ApoI | RAATTY | 1 cut(s) | 560 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 479, 511 |
| AspA2I | CCTAGG | 1 cut(s) | 1034 |
| AspS9I | GGNCC | 3 cut(s) | 389, 914, 1031 |
| AsuC2I | CCSGG | 1 cut(s) | 912 |
| AsuHPI | GGTGA | 4 cut(s) | 75, 198, 773, 1151 |
| AvaII | GGWCC | 1 cut(s) | 914 |
| AvrII | CCTAGG | 1 cut(s) | 1034 |
| BaeGI | GKGCMC | 1 cut(s) | 681 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1213, 1245 |
| BbsI | GAAGAC | 1 cut(s) | 1262 |
| Bbv12I | GWGCWC | 1 cut(s) | 681 |
| BccI | CCATC | 2 cut(s) | 154, 1291 |
| BcnI | CCSGG | 1 cut(s) | 912 |
| BfaI | CTAG | 7 cut(s) | 134, 776, 1035, 1085, 1125, 1157, 1266 |
| BisI | GCNGC | 1 cut(s) | 1102 |
| BlnI | CCTAGG | 1 cut(s) | 1034 |
| BlsI | GCNGC | 1 cut(s) | 1103 |
| Bme1390I | CCNGG | 1 cut(s) | 912 |
| Bme18I | GGWCC | 1 cut(s) | 914 |
| BmgT120I | GGNCC | 3 cut(s) | 389, 914, 1031 |
| BmiI | GGNNCC | 2 cut(s) | 701, 1188 |
| BmrFI | CCNGG | 1 cut(s) | 912 |
| BmsI | GCATC | 1 cut(s) | 999 |
| BpiI | GAAGAC | 1 cut(s) | 1262 |
| BpuMI | CCSGG | 1 cut(s) | 912 |
| BsaJI | CCNNGG | 3 cut(s) | 910, 1034, 1297 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 202, 232 |
| Bse3DI | GCAATG | 3 cut(s) | 19, 313, 1289 |
| BseDI | CCNNGG | 3 cut(s) | 910, 1034, 1297 |
| BseGI | GGATG | 4 cut(s) | 157, 298, 347, 1283 |
| BseMI | GCAATG | 3 cut(s) | 19, 313, 1289 |
| BseSI | GKGCMC | 1 cut(s) | 681 |
| BshFI | GGCC | 2 cut(s) | 391, 1033 |
| BsiHKAI | GWGCWC | 1 cut(s) | 681 |
| BsiSI | CCGG | 1 cut(s) | 912 |
| BsmI | GAATGC | 3 cut(s) | 115, 245, 884 |
| BsnI | GGCC | 2 cut(s) | 391, 1033 |
| Bsp1286I | GDGCHC | 1 cut(s) | 681 |
| Bsp143I | GATC | 1 cut(s) | 923 |
| Bsp19I | CCATGG | 1 cut(s) | 1297 |
| BspACI | CCGC | 2 cut(s) | 1002, 1101 |
| BspANI | GGCC | 2 cut(s) | 391, 1033 |
| BspLI | GGNNCC | 2 cut(s) | 701, 1188 |
| BspPI | GGATC | 1 cut(s) | 918 |
| BsrDI | GCAATG | 3 cut(s) | 19, 313, 1289 |
| BssECI | CCNNGG | 3 cut(s) | 910, 1034, 1297 |
| BssMI | GATC | 1 cut(s) | 923 |
| BssT1I | CCWWGG | 2 cut(s) | 1034, 1297 |
| Bst6I | CTCTTC | 2 cut(s) | 368, 1267 |
| BstDEI | CTNAG | 4 cut(s) | 353, 613, 731, 860 |
| BstDSI | CCRYGG | 1 cut(s) | 1297 |
| BstF5I | GGATG | 4 cut(s) | 157, 298, 347, 1283 |
| BstKTI | GATC | 1 cut(s) | 926 |
| BstMBI | GATC | 1 cut(s) | 923 |
| BstNSI | RCATGY | 5 cut(s) | 44, 93, 115, 167, 1044 |
| BstSCI | CCNGG | 1 cut(s) | 910 |
| BstSLI | GKGCMC | 1 cut(s) | 681 |
| BstV2I | GAAGAC | 1 cut(s) | 1262 |
| BsuRI | GGCC | 2 cut(s) | 391, 1033 |
| BtgI | CCRYGG | 1 cut(s) | 1297 |
| BtsCI | GGATG | 4 cut(s) | 157, 298, 347, 1283 |
| Cfr13I | GGNCC | 3 cut(s) | 389, 914, 1031 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1225, 1260 |
| CviJI | RGCY | 8 cut(s) | 137, 391, 444, 629, 779, 859, 1033, 1250 |
| CviKI_1 | RGCY | 8 cut(s) | 137, 391, 444, 629, 779, 859, 1033, 1250 |
| DdeI | CTNAG | 4 cut(s) | 353, 613, 731, 860 |
| DpnI | GATC | 1 cut(s) | 925 |
| DpnII | GATC | 1 cut(s) | 923 |
| DraI | TTTAAA | 2 cut(s) | 834, 870 |
| Eam1104I | CTCTTC | 2 cut(s) | 368, 1267 |
| EarI | CTCTTC | 2 cut(s) | 368, 1267 |
| Eco130I | CCWWGG | 2 cut(s) | 1034, 1297 |
| Eco47I | GGWCC | 1 cut(s) | 914 |
| EcoO109I | RGGNCCY | 2 cut(s) | 389, 1031 |
| EcoRI | GAATTC | 1 cut(s) | 560 |
| EcoT14I | CCWWGG | 2 cut(s) | 1034, 1297 |
| EcoT22I | ATGCAT | 4 cut(s) | 46, 117, 247, 654 |
| ErhI | CCWWGG | 2 cut(s) | 1034, 1297 |
| FblI | GTMKAC | 1 cut(s) | 896 |
| Fnu4HI | GCNGC | 1 cut(s) | 1102 |
| FokI | GGATG | 4 cut(s) | 144, 285, 334, 1270 |
| Fsp4HI | GCNGC | 1 cut(s) | 1102 |
| FspBI | CTAG | 7 cut(s) | 134, 776, 1035, 1085, 1125, 1157, 1266 |
| GluI | GCNGC | 1 cut(s) | 1102 |
| HaeIII | GGCC | 2 cut(s) | 391, 1033 |
| HapII | CCGG | 1 cut(s) | 912 |
| HinfI | GANTC | 4 cut(s) | 770, 845, 893, 1015 |
| HpaII | CCGG | 1 cut(s) | 912 |
| HphI | GGTGA | 4 cut(s) | 75, 198, 773, 1151 |
| Hpy166II | GTNNAC | 4 cut(s) | 529, 679, 897, 917 |
| Hpy188I | TCNGA | 3 cut(s) | 559, 599, 995 |
| Hpy188III | TCNNGA | 2 cut(s) | 691, 1125 |
| Hpy8I | GTNNAC | 4 cut(s) | 529, 679, 897, 917 |
| Hpy99I | CGWCG | 1 cut(s) | 373 |
| HpyAV | CCTTC | 2 cut(s) | 63, 990 |
| HpyCH4IV | ACGT | 1 cut(s) | 397 |
| HpyF3I | CTNAG | 4 cut(s) | 353, 613, 731, 860 |
| HpySE526I | ACGT | 1 cut(s) | 397 |
| Kzo9I | GATC | 1 cut(s) | 923 |
| LmnI | GCTCC | 1 cut(s) | 1299 |
| LpnPI | CCDG | 3 cut(s) | 925, 1148, 1252 |
| LweI | GCATC | 1 cut(s) | 999 |
| MaeI | CTAG | 7 cut(s) | 134, 776, 1035, 1085, 1125, 1157, 1266 |
| MaeII | ACGT | 1 cut(s) | 397 |
| MaeIII | GTNAC | 1 cut(s) | 608 |
| MalI | GATC | 1 cut(s) | 925 |
| MboI | GATC | 1 cut(s) | 923 |
| MboII | GAAGA | 8 cut(s) | 298, 385, 391, 1196, 1205, 1224, 1254, 1262 |
| MfeI | CAATTG | 1 cut(s) | 947 |
| MhlI | GDGCHC | 1 cut(s) | 681 |
| MlyI | GAGTC | 2 cut(s) | 854, 902 |
| MmeI | TCCRAC | 2 cut(s) | 404, 1158 |
| MnlI | CCTC | 9 cut(s) | 321, 329, 369, 380, 447, 911, 953, 1082, 1297 |
| Mph1103I | ATGCAT | 4 cut(s) | 46, 117, 247, 654 |
| MslI | CAYNNNNRTG | 3 cut(s) | 88, 162, 1109 |
| MspI | CCGG | 1 cut(s) | 912 |
| MspR9I | CCNGG | 1 cut(s) | 912 |
| MunI | CAATTG | 1 cut(s) | 947 |
| Mva1269I | GAATGC | 3 cut(s) | 115, 245, 884 |
| NciI | CCSGG | 1 cut(s) | 912 |
| NcoI | CCATGG | 1 cut(s) | 1297 |
| NdeII | GATC | 1 cut(s) | 923 |
| NlaIV | GGNNCC | 2 cut(s) | 701, 1188 |
| NmeAIII | GCCGAG | 1 cut(s) | 420 |
| NmuCI | GTSAC | 1 cut(s) | 608 |
| NsiI | ATGCAT | 4 cut(s) | 46, 117, 247, 654 |
| NspI | RCATGY | 5 cut(s) | 44, 93, 115, 167, 1044 |
| PciI | ACATGT | 1 cut(s) | 1040 |
| PctI | GAATGC | 3 cut(s) | 115, 245, 884 |
| PfeI | GAWTC | 2 cut(s) | 770, 1015 |
| PkrI | GCNGC | 1 cut(s) | 1103 |
| PleI | GAGTC | 2 cut(s) | 853, 901 |
| PpsI | GAGTC | 2 cut(s) | 853, 901 |
| PscI | ACATGT | 1 cut(s) | 1040 |
| Psp1406I | AACGTT | 1 cut(s) | 397 |
| PspN4I | GGNNCC | 2 cut(s) | 701, 1188 |
| PspPI | GGNCC | 3 cut(s) | 389, 914, 1031 |
| RseI | CAYNNNNRTG | 3 cut(s) | 88, 162, 1109 |
| SatI | GCNGC | 1 cut(s) | 1102 |
| Sau3AI | GATC | 1 cut(s) | 923 |
| Sau96I | GGNCC | 3 cut(s) | 389, 914, 1031 |
| SchI | GAGTC | 2 cut(s) | 854, 902 |
| ScrFI | CCNGG | 1 cut(s) | 912 |
| SduI | GDGCHC | 1 cut(s) | 681 |
| SfaNI | GCATC | 1 cut(s) | 999 |
| SinI | GGWCC | 1 cut(s) | 914 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 88, 162, 1109 |
| SsiI | CCGC | 2 cut(s) | 1002, 1101 |
| SspMI | CTAG | 7 cut(s) | 134, 776, 1035, 1085, 1125, 1157, 1266 |
| StyD4I | CCNGG | 1 cut(s) | 910 |
| StyI | CCWWGG | 2 cut(s) | 1034, 1297 |
| TaiI | ACGT | 1 cut(s) | 400 |
| TaqI | TCGA | 2 cut(s) | 486, 768 |
| TauI | GCSGC | 1 cut(s) | 1104 |
| TfiI | GAWTC | 2 cut(s) | 770, 1015 |
| TseFI | GTSAC | 1 cut(s) | 608 |
| Tsp45I | GTSAC | 1 cut(s) | 608 |
| VneI | GTGCAC | 1 cut(s) | 677 |
| VpaK11BI | GGWCC | 1 cut(s) | 914 |
| XapI | RAATTY | 1 cut(s) | 560 |
| XbaI | TCTAGA | 1 cut(s) | 1124 |
| XceI | RCATGY | 5 cut(s) | 44, 93, 115, 167, 1044 |
| XmaJI | CCTAGG | 1 cut(s) | 1034 |
| XmiI | GTMKAC | 1 cut(s) | 896 |
| XspI | CTAG | 7 cut(s) | 134, 776, 1035, 1085, 1125, 1157, 1266 |
| Zsp2I | ATGCAT | 4 cut(s) | 46, 117, 247, 654 |