pycom12426g00110

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012426
Physical Location & Seq
Forward (+)
58461 .. 60146
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12426g00110.1

Sequence Viewer

Length: 1338 bp
ATGGGGAGAATGAGAGAAAATTCGTATGGATGTGTATGGATGTCTAGAATCTCCCATAAGTGCGGCAGATTATGTATATATAGAGGAAGAAAGGTTAAGGCAATAAGAAAAAGGGTAACAAATCAGAATTCTAAGAGGAAAAGGAAAGGAAAGTTGCGATTTTGGAAGAAAAGGGTAAGGATATATGCGGCAAGGACTAGTGATAGGAGCATATTCATGCGACTTAAATGGCTTTACTTTAAGCTATTTTCGTGTGTCTGTAGGTCCAAAGGGCTAAAGGAGCAAAAAGATCTTATGCTTGGAGCCAAAGTGTTGGACGAAATTGAAGACCTAATTGAAGACCAAAGTGTTGAAACCTTGTTCCCTTTAGTTTTAGGACATTTAAAACCATTCATATTCTCCCATAGCCTAACCTTGCAATTCCAGGTTGTCCACTTCATCATTGCAGCCACCATTCATCCTAGTTGTCAATCACATACTTTCCCATTGTATAATTCATCCACATGCATCTTTAACCAACAAACAAATCAGCCACACATTCATTCACTTTCCTTTTTCAGATTGCATTCCCATTCTTTAAGTCAACCAACACAACCATGCACTCCACATGCATTTCCACCCTTCGAAGACCCTAATCATTCATCCACACAATCTGCCATCATTCACACAAACACCATCATTGCCATGCATCCCATTCCATCTCCCATTTCAGATTGCATTTCATTCATTCCAACCAAGCCACATGCACTCCCTTTAAATATATTCAACCTAGCTGTCATTCCACTTCATTGCACATGCATTCCCTTCATAAATAATTCACATGCATTCATCATCATTCCCCCTTTAATCCACATGCTCTCCCATTTCAGATTACATTACCATTCACCACAGAAAAACACCATCATTGCCGCATTCATACAAAGCTTTAATCCACATGCATTTCCACCTAGCTTTCCACCTCACAACCACCAGAAATCAACCAAAACCGTGCATTCCCTTTCATTTCTGTCAAAGCACATGCACTCCCACCCTTTAATCACATGCATAAATCAGCCACATGCATCTCCCATCACCATTTCAGATTTCCACCAAGCTCCTAGCTGTCATGTTCCCCCCATTTCACCTATAAATAAAAAATCACCCAATTCCATACATCCTTGGCCGTGGCTTCCCTACCAATCCAAACACCACTCCAACCACTCCCCATCCCTCCAAAACACTTCACACTATCCCAAAACTCACCTTAGACCTTGTGATACAACAACGAGGAAGAGAAGAGTGCCTAAACGTTCATACAATTCAAGTTTGAGTTGTTGGAATGTTTATGTGTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

446

Amino Acids

51.31

Weight (kDa)

10.09

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 63, 188, 909
AclI AACGTT 1 cut(s) 1288
AcoI YGGCCR 1 cut(s) 1160
AcsI RAATTY 2 cut(s) 19, 127
AgsI TTSAA 5 cut(s) 326, 338, 353, 766, 1302
AhlI ACTAGT 1 cut(s) 197
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 6 cut(s) 244, 773, 924, 951, 1094, 1101
AluI AGCT 6 cut(s) 244, 773, 924, 951, 1094, 1101
AoxI GGCC 1 cut(s) 1160
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 2 cut(s) 19, 127
AspS9I GGNCC 1 cut(s) 264
AsuHPI GGTGA 5 cut(s) 876, 1063, 1113, 1131, 1232
AsuII TTCGAA 1 cut(s) 624
AvaII GGWCC 1 cut(s) 264
BbsI GAAGAC 3 cut(s) 333, 345, 633
BbvI GCAGC 1 cut(s) 458
BccI CCATC 6 cut(s) 665, 683, 706, 908, 1076, 1213
BceAI ACGGC 1 cut(s) 1147
BciT130I CCWGG 1 cut(s) 425
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 6 cut(s) 45, 198, 462, 770, 948, 1098
BfmI CTRYAG 1 cut(s) 259
BglII AGATCT 1 cut(s) 289
BisI GCNGC 4 cut(s) 64, 189, 447, 909
BlsI GCNGC 4 cut(s) 65, 190, 448, 910
Bme1390I CCNGG 1 cut(s) 425
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 425
BmsI GCATC 3 cut(s) 516, 697, 1070
BpiI GAAGAC 3 cut(s) 333, 345, 633
Bpu14I TTCGAA 1 cut(s) 624
BsaJI CCNNGG 2 cut(s) 1157, 1163
BsaXI ACNNNNNCTCC 8 cut(s) 294, 324, 732, 762, 842, 872, 1007, 1037
Bse3DI GCAATG 4 cut(s) 441, 678, 787, 903
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 1157, 1163
BseGI GGATG 8 cut(s) 35, 45, 457, 497, 641, 688, 1153, 1205
BseMI GCAATG 4 cut(s) 441, 678, 787, 903
BseXI GCAGC 1 cut(s) 458
BshFI GGCC 1 cut(s) 1162
BsmI GAATGC 5 cut(s) 565, 798, 824, 911, 991
BsnI GGCC 1 cut(s) 1162
Bsp119I TTCGAA 1 cut(s) 624
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 3 cut(s) 63, 188, 909
BspANI GGCC 1 cut(s) 1162
BspLI GGNNCC 1 cut(s) 304
BspT104I TTCGAA 1 cut(s) 624
BsrDI GCAATG 4 cut(s) 441, 678, 787, 903
BssECI CCNNGG 2 cut(s) 1157, 1163
BssMI GATC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 1157
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 1 cut(s) 988
Bst6I CTCTTC 2 cut(s) 1265, 1270
BstBI TTCGAA 1 cut(s) 624
BstDEI CTNAG 2 cut(s) 132, 1244
BstDSI CCRYGG 1 cut(s) 1163
BstF5I GGATG 8 cut(s) 35, 45, 457, 497, 641, 688, 1153, 1205
BstKTI GATC 1 cut(s) 292
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 423
BstSFI CTRYAG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 458
BstV2I GAAGAC 3 cut(s) 333, 345, 633
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 313
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 1162
BtgI CCRYGG 1 cut(s) 1163
BtsCI GGATG 8 cut(s) 35, 45, 457, 497, 641, 688, 1153, 1205
Cfr13I GGNCC 1 cut(s) 264
DdeI CTNAG 2 cut(s) 132, 1244
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
DraI TTTAAA 2 cut(s) 384, 756
EaeI YGGCCR 1 cut(s) 1160
Eam1104I CTCTTC 2 cut(s) 1265, 1270
EarI CTCTTC 2 cut(s) 1265, 1270
Eco130I CCWWGG 1 cut(s) 1157
Eco47I GGWCC 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 1157
EcoT22I ATGCAT 8 cut(s) 509, 613, 690, 800, 826, 940, 1046, 1063
ErhI CCWWGG 1 cut(s) 1157
Fnu4HI GCNGC 4 cut(s) 64, 189, 447, 909
FokI GGATG 8 cut(s) 42, 52, 444, 484, 628, 675, 1140, 1192
Fsp4HI GCNGC 4 cut(s) 64, 189, 447, 909
FspBI CTAG 6 cut(s) 45, 198, 462, 770, 948, 1098
GluI GCNGC 4 cut(s) 64, 189, 447, 909
HaeIII GGCC 1 cut(s) 1162
HincII GTYRAC 1 cut(s) 584
HindII GTYRAC 1 cut(s) 584
HindIII AAGCTT 1 cut(s) 922
HinfI GANTC 1 cut(s) 48
HphI GGTGA 5 cut(s) 876, 1063, 1113, 1131, 1232
Hpy166II GTNNAC 2 cut(s) 433, 584
Hpy188I TCNGA 5 cut(s) 126, 560, 712, 869, 1081
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 2 cut(s) 433, 584
HpyAV CCTTC 2 cut(s) 631, 814
HpyCH4III ACNGT 1 cut(s) 988
HpyCH4IV ACGT 1 cut(s) 1288
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 2 cut(s) 132, 1244
HpySE526I ACGT 1 cut(s) 1288
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 4 cut(s) 207, 280, 302, 1099
LpnPI CCDG 3 cut(s) 410, 437, 983
Lsp1109I GCAGC 1 cut(s) 458
LweI GCATC 3 cut(s) 516, 697, 1070
MaeI CTAG 6 cut(s) 45, 198, 462, 770, 948, 1098
MaeII ACGT 1 cut(s) 1288
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 7 cut(s) 99, 178, 338, 350, 638, 1282, 1287
MflI RGATCY 1 cut(s) 289
MluCI AATT 9 cut(s) 19, 127, 321, 333, 419, 493, 814, 1144, 1297
MmeI TCCRAC 4 cut(s) 294, 755, 1218, 1295
MnlI CCTC 5 cut(s) 77, 129, 969, 1220, 1260
Mph1103I ATGCAT 8 cut(s) 509, 613, 690, 800, 826, 940, 1046, 1063
MslI CAYNNNNRTG 4 cut(s) 215, 502, 595, 683
MspR9I CCNGG 1 cut(s) 425
Mva1269I GAATGC 5 cut(s) 565, 798, 824, 911, 991
MvaI CCWGG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeII GATC 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 304
NsiI ATGCAT 8 cut(s) 509, 613, 690, 800, 826, 940, 1046, 1063
NspV TTCGAA 1 cut(s) 624
PctI GAATGC 5 cut(s) 565, 798, 824, 911, 991
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 4 cut(s) 65, 190, 448, 910
Psp1406I AACGTT 1 cut(s) 1288
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 264
PsuI RGATCY 1 cut(s) 289
RseI CAYNNNNRTG 4 cut(s) 215, 502, 595, 683
SatI GCNGC 4 cut(s) 64, 189, 447, 909
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 425
SfaNI GCATC 3 cut(s) 516, 697, 1070
SfcI CTRYAG 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 624
SinI GGWCC 1 cut(s) 264
SmiMI CAYNNNNRTG 4 cut(s) 215, 502, 595, 683
SpeI ACTAGT 1 cut(s) 197
Sse9I AATT 9 cut(s) 19, 127, 321, 333, 419, 493, 814, 1144, 1297
SsiI CCGC 3 cut(s) 63, 188, 909
SspMI CTAG 6 cut(s) 45, 198, 462, 770, 948, 1098
StyD4I CCNGG 1 cut(s) 423
StyI CCWWGG 1 cut(s) 1157
TaaI ACNGT 1 cut(s) 988
TaiI ACGT 1 cut(s) 1291
TaqI TCGA 1 cut(s) 624
TasI AATT 9 cut(s) 19, 127, 321, 333, 419, 493, 814, 1144, 1297
TauI GCSGC 3 cut(s) 66, 191, 911
TfiI GAWTC 1 cut(s) 48
TseI GCWGC 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 264
XapI RAATTY 2 cut(s) 19, 127
XbaI TCTAGA 1 cut(s) 44
XspI CTAG 6 cut(s) 45, 198, 462, 770, 948, 1098
Zsp2I ATGCAT 8 cut(s) 509, 613, 690, 800, 826, 940, 1046, 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.