pycom13g25610

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
22339775 .. 22340546
772 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g25610.4

Sequence Viewer

Length: 591 bp
ATGCATCTCCATAAATCATTCAACACACTTTCTCTCCCAAAAACCTTCCCTTTTTGCCGTGCACATCATCTTAAACAATCATGCACTCAACATGCATTTCCACCCTTACAAGACCCTAATCATTCATCCATACAATCTGCCATCTTTCACAAACACTTAAGCCTTTGCTGCAACCTTCCACCTTTCTTCCACCATGCATACACTCTTCATCATTGCAGCCACCTACATTCACCACCAGAAATCACTCATTGTCGTGCACATTCACTCACCACAAACATTCCACATGCATTCCATCCTTTAAAACATTGCACATGCATCCATAATCATTCATTCCAGCCAAGCCACATGCACATTCACCCTAATCATTCACATACACAACATGCACATTCTCCTTGCATTTCAGCCATTCCACATGCATTCATCATCATCACTCTAGCTTTAATTCACATGCACATTCAACATTCCAGAAATTCTCCCATGCCGTGCACATTCTCCTTTCATTTCTGTCAAAGCACATCACCATTTCAGATTTCCACCAAGTTCCTAGCTGTCATGTTCCCTTGGTGCGAGATTTATACGCACACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.58

Weight (kDa)

8.79

Isoelectric Point (pI)

69.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 469
AflII CTTAAG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 22, 458
AluBI AGCT 2 cut(s) 437, 548
AluI AGCT 2 cut(s) 437, 548
Alw21I GWGCWC 3 cut(s) 64, 259, 488
Alw44I GTGCAC 3 cut(s) 60, 255, 484
ApaLI GTGCAC 3 cut(s) 60, 255, 484
ApeKI GCWGC 2 cut(s) 168, 216
ApoI RAATTY 1 cut(s) 469
AsuHPI GGTGA 4 cut(s) 222, 259, 347, 510
BaeGI GKGCMC 3 cut(s) 64, 259, 488
Bbv12I GWGCWC 3 cut(s) 64, 259, 488
BbvI GCAGC 2 cut(s) 155, 228
BccI CCATC 2 cut(s) 149, 300
BceAI ACGGC 2 cut(s) 42, 466
BfaI CTAG 2 cut(s) 434, 545
BfrI CTTAAG 1 cut(s) 157
BisI GCNGC 2 cut(s) 169, 217
BlsI GCNGC 2 cut(s) 170, 218
BmsI GCATC 2 cut(s) 13, 324
BsaJI CCNNGG 1 cut(s) 560
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bse3DI GCAATG 2 cut(s) 211, 304
BseDI CCNNGG 1 cut(s) 560
BseGI GGATG 3 cut(s) 125, 292, 315
BseMI GCAATG 2 cut(s) 211, 304
BseSI GKGCMC 3 cut(s) 64, 259, 488
BseXI GCAGC 2 cut(s) 155, 228
BsiHKAI GWGCWC 3 cut(s) 64, 259, 488
BsmI GAATGC 2 cut(s) 287, 416
Bsp1286I GDGCHC 3 cut(s) 64, 259, 488
BspTI CTTAAG 1 cut(s) 157
BsrDI GCAATG 2 cut(s) 211, 304
BssECI CCNNGG 1 cut(s) 560
BssT1I CCWWGG 1 cut(s) 560
Bst6I CTCTTC 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 157
BstF5I GGATG 3 cut(s) 125, 292, 315
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNSI RCATGY 7 cut(s) 95, 287, 315, 349, 383, 416, 451
BstSLI GKGCMC 3 cut(s) 64, 259, 488
BstV1I GCAGC 2 cut(s) 155, 228
BtsCI GGATG 3 cut(s) 125, 292, 315
CviJI RGCY 7 cut(s) 162, 219, 337, 342, 404, 437, 548
CviKI_1 RGCY 7 cut(s) 162, 219, 337, 342, 404, 437, 548
DraI TTTAAA 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 560
EcoT14I CCWWGG 1 cut(s) 560
EcoT22I ATGCAT 6 cut(s) 6, 97, 199, 289, 317, 418
ErhI CCWWGG 1 cut(s) 560
Fnu4HI GCNGC 2 cut(s) 169, 217
FokI GGATG 3 cut(s) 112, 279, 302
Fsp4HI GCNGC 2 cut(s) 169, 217
FspBI CTAG 2 cut(s) 434, 545
GluI GCNGC 2 cut(s) 169, 217
HphI GGTGA 4 cut(s) 222, 259, 347, 510
Hpy166II GTNNAC 3 cut(s) 62, 257, 486
Hpy188I TCNGA 1 cut(s) 528
Hpy188III TCNNGA 1 cut(s) 465
Hpy8I GTNNAC 3 cut(s) 62, 257, 486
HpyAV CCTTC 2 cut(s) 55, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
LpnPI CCDG 3 cut(s) 249, 347, 478
Lsp1109I GCAGC 2 cut(s) 155, 228
LweI GCATC 2 cut(s) 13, 324
MaeI CTAG 2 cut(s) 434, 545
MboII GAAGA 2 cut(s) 178, 197
MhlI GDGCHC 3 cut(s) 64, 259, 488
MluCI AATT 3 cut(s) 441, 469, 586
Mph1103I ATGCAT 6 cut(s) 6, 97, 199, 289, 317, 418
MseI TTAA 5 cut(s) 72, 158, 299, 440, 589
MslI CAYNNNNRTG 1 cut(s) 252
MspCI CTTAAG 1 cut(s) 157
Mva1269I GAATGC 2 cut(s) 287, 416
MwoI GCNNNNNNNGC 1 cut(s) 168
NsiI ATGCAT 6 cut(s) 6, 97, 199, 289, 317, 418
NspI RCATGY 7 cut(s) 95, 287, 315, 349, 383, 416, 451
PctI GAATGC 2 cut(s) 287, 416
PkrI GCNGC 2 cut(s) 170, 218
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 5 cut(s) 72, 158, 299, 440, 589
SatI GCNGC 2 cut(s) 169, 217
SduI GDGCHC 3 cut(s) 64, 259, 488
SetI ASST 6 cut(s) 47, 177, 184, 225, 439, 550
SfaNI GCATC 2 cut(s) 13, 324
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 3 cut(s) 441, 469, 586
SspMI CTAG 2 cut(s) 434, 545
StyI CCWWGG 1 cut(s) 560
TasI AATT 3 cut(s) 441, 469, 586
Tru1I TTAA 5 cut(s) 72, 158, 299, 440, 589
Tru9I TTAA 5 cut(s) 72, 158, 299, 440, 589
TseI GCWGC 2 cut(s) 168, 216
TspDTI ATGAA 5 cut(s) 114, 197, 318, 409, 488
Vha464I CTTAAG 1 cut(s) 157
VneI GTGCAC 3 cut(s) 60, 255, 484
XapI RAATTY 1 cut(s) 469
XceI RCATGY 7 cut(s) 95, 287, 315, 349, 383, 416, 451
XspI CTAG 2 cut(s) 434, 545
Zsp2I ATGCAT 6 cut(s) 6, 97, 199, 289, 317, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.