pycom01g04590

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
3562923 .. 3563318
396 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g04590.1

Sequence Viewer

Length: 396 bp
ATGCTTGGAGCCAAGAGGATGGACGAAATTGAAGGATTCCTACTCCATTGCAGCCACATGCACATTCAATCATTCACACCAAAACCTTGCACATGCTTTCCCATTTCATTATTCATTCACTTTGCAGCCACCATTCACTCTTTAATCCACATGCATTCATCATCATTCACCCTAGCTTTAATTCACATGCAAACACATTCATTTTCAGCACCAAACACCATCATTGACATGCACTCCCATTTTCTCCCAAAACATTGCACATGCATTCATAATCATTCACACCTTGCAGCCACTCCACATGCATTTCCAGCTTTCCACCAACCTCCTAGCTGTCATATTCCCTTTTTTTCACCTATAAATAAACATCCATTGCAGCCACATGCATTCCCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.82

Weight (kDa)

7.83

Isoelectric Point (pI)

78.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 32, 68
AluBI AGCT 3 cut(s) 176, 311, 330
AluI AGCT 3 cut(s) 176, 311, 330
ApeKI GCWGC 4 cut(s) 51, 125, 287, 373
AsuHPI GGTGA 2 cut(s) 160, 342
BarI GAAGNNNNNNTAC 2 cut(s) 24, 56
BbvI GCAGC 4 cut(s) 63, 137, 299, 385
BccI CCATC 2 cut(s) 13, 227
BfaI CTAG 2 cut(s) 173, 327
BisI GCNGC 4 cut(s) 52, 126, 288, 374
BlsI GCNGC 4 cut(s) 53, 127, 289, 375
BmiI GGNNCC 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse3DI GCAATG 3 cut(s) 46, 253, 368
BseGI GGATG 2 cut(s) 24, 364
BseMI GCAATG 3 cut(s) 46, 253, 368
BseXI GCAGC 4 cut(s) 63, 137, 299, 385
BsmI GAATGC 3 cut(s) 154, 264, 383
BspLI GGNNCC 1 cut(s) 10
BsrDI GCAATG 3 cut(s) 46, 253, 368
BstF5I GGATG 2 cut(s) 24, 364
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNSI RCATGY 8 cut(s) 61, 96, 154, 190, 232, 264, 302, 383
BstV1I GCAGC 4 cut(s) 63, 137, 299, 385
BstXI CCANNNNNNTGG 1 cut(s) 19
BtsCI GGATG 2 cut(s) 24, 364
CviAII CATG 8 cut(s) 58, 93, 151, 187, 229, 261, 299, 380
CviJI RGCY 8 cut(s) 11, 54, 128, 176, 290, 311, 330, 376
CviKI_1 RGCY 8 cut(s) 11, 54, 128, 176, 290, 311, 330, 376
EcoT22I ATGCAT 4 cut(s) 156, 266, 304, 385
FaeI CATG 8 cut(s) 61, 96, 154, 190, 232, 264, 302, 383
FatI CATG 8 cut(s) 57, 92, 150, 186, 228, 260, 298, 379
Fnu4HI GCNGC 4 cut(s) 52, 126, 288, 374
FokI GGATG 2 cut(s) 31, 351
Fsp4HI GCNGC 4 cut(s) 52, 126, 288, 374
FspBI CTAG 2 cut(s) 173, 327
GluI GCNGC 4 cut(s) 52, 126, 288, 374
Hin1II CATG 8 cut(s) 61, 96, 154, 190, 232, 264, 302, 383
HinfI GANTC 1 cut(s) 36
HphI GGTGA 2 cut(s) 160, 342
HpyAV CCTTC 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
Hsp92II CATG 8 cut(s) 61, 96, 154, 190, 232, 264, 302, 383
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 1 cut(s) 321
Lsp1109I GCAGC 4 cut(s) 63, 137, 299, 385
MaeI CTAG 2 cut(s) 173, 327
MluCI AATT 2 cut(s) 27, 180
MnlI CCTC 2 cut(s) 9, 333
Mph1103I ATGCAT 4 cut(s) 156, 266, 304, 385
MseI TTAA 3 cut(s) 143, 179, 394
MslI CAYNNNNRTG 1 cut(s) 227
Mva1269I GAATGC 3 cut(s) 154, 264, 383
MwoI GCNNNNNNNGC 1 cut(s) 308
NlaIII CATG 8 cut(s) 61, 96, 154, 190, 232, 264, 302, 383
NlaIV GGNNCC 1 cut(s) 10
NsiI ATGCAT 4 cut(s) 156, 266, 304, 385
NspI RCATGY 8 cut(s) 61, 96, 154, 190, 232, 264, 302, 383
PctI GAATGC 3 cut(s) 154, 264, 383
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 4 cut(s) 53, 127, 289, 375
PspN4I GGNNCC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 3 cut(s) 143, 179, 394
SatI GCNGC 4 cut(s) 52, 126, 288, 374
SetI ASST 7 cut(s) 88, 178, 285, 313, 325, 332, 355
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 2 cut(s) 27, 180
SspMI CTAG 2 cut(s) 173, 327
TasI AATT 2 cut(s) 27, 180
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 3 cut(s) 143, 179, 394
Tru9I TTAA 3 cut(s) 143, 179, 394
TseI GCWGC 4 cut(s) 51, 125, 287, 373
TspDTI ATGAA 5 cut(s) 96, 103, 147, 189, 257
XceI RCATGY 8 cut(s) 61, 96, 154, 190, 232, 264, 302, 383
XspI CTAG 2 cut(s) 173, 327
Zsp2I ATGCAT 4 cut(s) 156, 266, 304, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.