pycom17g17460

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
15158867 .. 15159754
888 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g17460.1

Sequence Viewer

Length: 747 bp
ATGCATTCATCAACATATCTAGTTGTCACTCATGCATTTCCAATCCACATGCAGCACCCAAACAAAGCCAACCTAGCTAACCCTACATGCATTTCTTTATTCACTCTTCATCACATGCATTTTCACCACCATTCCTTCCCACTCATTCAATTAAGCTACCATTCATTCTTTATTCCACATACACTCATCATCACACACCCTAGCTATCATTCACATGCATTCACATGCATCACAACCCCAAAACCATCAAGAAAACACCCTTGCCGTGGCCTTCACTCACACTTCCAGCTTTCCACCTTGCATTTCCAGATTATTGCTTCATCATTGCATCCATTCCACATGCATTCTTCATCATTGCACCACAAATCAGCTCATCCCACACTCCATGCCGTGGCCTACCTCCCATTTCCAGCTTTCACATGCCTTCAACTGCATTTCCAGCACATCCTTTGCTTTACATCTCCACAAACACATGCATTTACACCCAAAAATCCCCTTTGCCGTGGGATCCTTGTGCTTTCCAGCTTTCCTAGCTGTTTTCCACCACATTTCAGCACATGCATGCTTAAACAAACATCCCATTACCAAATCATCTCATTTTTCATACACAACACACCACAAACACATCCATTCTTCCTTTGTGCCGTGAGCTCCCATTCCCTTATAATCCAAACACCACTCCTCATCCATTTCCATAATCCCCCAAACCTCACCTTAGACCTTGTGCTACAACAACGAGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.43

Weight (kDa)

9.44

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 665
AccB7I CCANNNNNTGG 1 cut(s) 391
AclWI GGATC 2 cut(s) 502, 515
AfiI CCNNNNNNNGG 2 cut(s) 266, 391
AgsI TTSAA 2 cut(s) 149, 428
AluBI AGCT 9 cut(s) 77, 156, 204, 289, 371, 413, 525, 534, 651
AluI AGCT 9 cut(s) 77, 156, 204, 289, 371, 413, 525, 534, 651
Alw21I GWGCWC 1 cut(s) 653
AlwI GGATC 2 cut(s) 502, 515
AoxI GGCC 2 cut(s) 268, 393
ApeKI GCWGC 1 cut(s) 52
AsuHPI GGTGA 2 cut(s) 116, 703
BamHI GGATCC 1 cut(s) 507
BanII GRGCYC 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 653
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 253
BceAI ACGGC 4 cut(s) 249, 374, 486, 629
BfaI CTAG 4 cut(s) 20, 74, 201, 531
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 509
BmsI GCATC 2 cut(s) 237, 337
BsaJI CCNNGG 3 cut(s) 265, 390, 502
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 391
Bse3DI GCAATG 2 cut(s) 323, 353
BseDI CCNNGG 3 cut(s) 265, 390, 502
BseGI GGATG 6 cut(s) 328, 373, 444, 575, 625, 684
BseLI CCNNNNNNNGG 2 cut(s) 266, 391
BseMI GCAATG 2 cut(s) 323, 353
BseRI GAGGAG 1 cut(s) 671
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 2 cut(s) 270, 395
BsiHKAI GWGCWC 1 cut(s) 653
BslI CCNNNNNNNGG 2 cut(s) 266, 391
BsmI GAATGC 3 cut(s) 4, 218, 343
BsnI GGCC 2 cut(s) 270, 395
Bsp1286I GDGCHC 1 cut(s) 653
Bsp143I GATC 1 cut(s) 507
BspANI GGCC 2 cut(s) 270, 395
BspLI GGNNCC 1 cut(s) 509
BspPI GGATC 2 cut(s) 502, 515
BsrDI GCAATG 2 cut(s) 323, 353
BssECI CCNNGG 3 cut(s) 265, 390, 502
BssMI GATC 1 cut(s) 507
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 563
BstDEI CTNAG 1 cut(s) 715
BstDSI CCRYGG 3 cut(s) 265, 390, 502
BstF5I GGATG 6 cut(s) 328, 373, 444, 575, 625, 684
BstKTI GATC 1 cut(s) 510
BstMBI GATC 1 cut(s) 507
BstMWI GCNNNNNNNGC 3 cut(s) 74, 439, 531
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 507
BstYI RGATCY 1 cut(s) 507
BsuRI GGCC 2 cut(s) 270, 395
BtgI CCRYGG 3 cut(s) 265, 390, 502
BtsCI GGATG 6 cut(s) 328, 373, 444, 575, 625, 684
Cac8I GCNNGC 1 cut(s) 563
DdeI CTNAG 1 cut(s) 715
DpnI GATC 1 cut(s) 509
DpnII GATC 1 cut(s) 507
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 653
Eco53kI GAGCTC 1 cut(s) 651
EcoICRI GAGCTC 1 cut(s) 651
EcoT22I ATGCAT 9 cut(s) 6, 37, 92, 120, 220, 230, 345, 478, 563
EcoT38I GRGCYC 1 cut(s) 653
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 6 cut(s) 315, 360, 431, 562, 612, 671
FriOI GRGCYC 1 cut(s) 653
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 4 cut(s) 20, 74, 201, 531
GluI GCNGC 1 cut(s) 53
HaeIII GGCC 2 cut(s) 270, 395
HphI GGTGA 2 cut(s) 116, 703
Hpy188III TCNNGA 2 cut(s) 249, 307
HpyAV CCTTC 3 cut(s) 145, 281, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 439, 531
HpyF3I CTNAG 1 cut(s) 715
Kzo9I GATC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 656
LpnPI CCDG 5 cut(s) 299, 320, 423, 452, 535
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 237, 337
MaeI CTAG 4 cut(s) 20, 74, 201, 531
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 509
MboI GATC 1 cut(s) 507
MboII GAAGA 3 cut(s) 98, 339, 625
MflI RGATCY 1 cut(s) 507
MhlI GDGCHC 1 cut(s) 653
MluCI AATT 1 cut(s) 149
MnlI CCTC 4 cut(s) 410, 692, 719, 731
Mph1103I ATGCAT 9 cut(s) 6, 37, 92, 120, 220, 230, 345, 478, 563
MseI TTAA 2 cut(s) 152, 567
MslI CAYNNNNRTG 3 cut(s) 213, 223, 560
Mva1269I GAATGC 3 cut(s) 4, 218, 343
MwoI GCNNNNNNNGC 3 cut(s) 74, 439, 531
NdeII GATC 1 cut(s) 507
NlaIV GGNNCC 1 cut(s) 509
NmuCI GTSAC 1 cut(s) 25
NsiI ATGCAT 9 cut(s) 6, 37, 92, 120, 220, 230, 345, 478, 563
PaeI GCATGC 1 cut(s) 565
PctI GAATGC 3 cut(s) 4, 218, 343
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 1 cut(s) 54
PsiI TTATAA 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 653
PspN4I GGNNCC 1 cut(s) 509
PsuI RGATCY 1 cut(s) 507
RseI CAYNNNNRTG 3 cut(s) 213, 223, 560
SacI GAGCTC 1 cut(s) 653
SaqAI TTAA 2 cut(s) 152, 567
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 507
SduI GDGCHC 1 cut(s) 653
SfaNI GCATC 2 cut(s) 237, 337
SmiMI CAYNNNNRTG 3 cut(s) 213, 223, 560
SphI GCATGC 1 cut(s) 565
Sse9I AATT 1 cut(s) 149
SspMI CTAG 4 cut(s) 20, 74, 201, 531
SstI GAGCTC 1 cut(s) 653
TasI AATT 1 cut(s) 149
Tru1I TTAA 2 cut(s) 152, 567
Tru9I TTAA 2 cut(s) 152, 567
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 5 cut(s) 98, 153, 309, 339, 592
Van91I CCANNNNNTGG 1 cut(s) 391
XspI CTAG 4 cut(s) 20, 74, 201, 531
Zsp2I ATGCAT 9 cut(s) 6, 37, 92, 120, 220, 230, 345, 478, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.