pycom12646g00150

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012646
Physical Location & Seq
Forward (+)
228438 .. 228836
399 bp
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UTR
Exon/CDS
Intron
pycom12646g00150.1

Sequence Viewer

Length: 399 bp
ATGGCTAAGGAAGCAAAAAGATGCATTTTGGAGCAAATTAGAGATTGGAATGGATATCATATGCTTGGAGCCAAGAGGATGGACGAAATTGAAGGATTCCTAATCCATTGCAGCCACATGCACATTCAATCATTCACACCAAAACCTTGCACATGCTTTCCCATTTCATTATTCATTCACTTTGCAGCCACCATTCACTCTTTAATCCACATGCATTCATCATCATTCACCACACTTTCCAACCCACATGCACTTCCCCTTTTAATCATTCAAACATGCACTCCCTTTAATCACATGCATAAATCAGCCACATGCATCTCCCATCACCATATCAGATTTCCATCATATTCACATGCATTCCATCCTTTAAAACATTGCACATGCACTCCCTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.2

Weight (kDa)

8.7

Isoelectric Point (pI)

70.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 92, 128, 272
ApeKI GCWGC 2 cut(s) 111, 185
AsuHPI GGTGA 2 cut(s) 220, 317
BbvI GCAGC 2 cut(s) 123, 197
BccI CCATC 4 cut(s) 73, 330, 349, 369
BisI GCNGC 2 cut(s) 112, 186
BlsI GCNGC 2 cut(s) 113, 187
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 2 cut(s) 11, 324
Bpu10I CCTNAGC 1 cut(s) 6
BsaBI GATNNNNATC 1 cut(s) 340
BsaXI ACNNNNNCTCC 3 cut(s) 265, 295, 370
Bse3DI GCAATG 2 cut(s) 106, 373
Bse8I GATNNNNATC 1 cut(s) 340
BseGI GGATG 2 cut(s) 84, 361
BseJI GATNNNNATC 1 cut(s) 340
BseMI GCAATG 2 cut(s) 106, 373
BseXI GCAGC 2 cut(s) 123, 197
BsmI GAATGC 2 cut(s) 214, 356
BspLI GGNNCC 1 cut(s) 70
BsrDI GCAATG 2 cut(s) 106, 373
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 84, 361
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 9 cut(s) 121, 156, 214, 251, 279, 298, 315, 356, 384
BstV1I GCAGC 2 cut(s) 123, 197
BstXI CCANNNNNNTGG 1 cut(s) 79
BtsCI GGATG 2 cut(s) 84, 361
CviAII CATG 9 cut(s) 118, 153, 211, 248, 276, 295, 312, 353, 381
CviJI RGCY 5 cut(s) 5, 71, 114, 188, 308
CviKI_1 RGCY 5 cut(s) 5, 71, 114, 188, 308
DdeI CTNAG 1 cut(s) 6
DraI TTTAAA 1 cut(s) 369
Eco32I GATATC 1 cut(s) 56
EcoRV GATATC 1 cut(s) 56
EcoT22I ATGCAT 5 cut(s) 26, 216, 300, 317, 358
FaeI CATG 9 cut(s) 121, 156, 214, 251, 279, 298, 315, 356, 384
FatI CATG 9 cut(s) 117, 152, 210, 247, 275, 294, 311, 352, 380
FauNDI CATATG 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 112, 186
FokI GGATG 2 cut(s) 91, 348
Fsp4HI GCNGC 2 cut(s) 112, 186
GluI GCNGC 2 cut(s) 112, 186
Hin1II CATG 9 cut(s) 121, 156, 214, 251, 279, 298, 315, 356, 384
HinfI GANTC 1 cut(s) 96
HphI GGTGA 2 cut(s) 220, 317
Hpy188I TCNGA 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 9 cut(s) 121, 156, 214, 251, 279, 298, 315, 356, 384
LmnI GCTCC 2 cut(s) 31, 68
Lsp1109I GCAGC 2 cut(s) 123, 197
LweI GCATC 2 cut(s) 11, 324
MluCI AATT 3 cut(s) 36, 87, 394
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 1 cut(s) 69
Mph1103I ATGCAT 5 cut(s) 26, 216, 300, 317, 358
MseI TTAA 6 cut(s) 203, 263, 288, 368, 393, 397
Mva1269I GAATGC 2 cut(s) 214, 356
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeI CATATG 1 cut(s) 60
NlaIII CATG 9 cut(s) 121, 156, 214, 251, 279, 298, 315, 356, 384
NlaIV GGNNCC 1 cut(s) 70
NsiI ATGCAT 5 cut(s) 26, 216, 300, 317, 358
NspI RCATGY 9 cut(s) 121, 156, 214, 251, 279, 298, 315, 356, 384
PacI TTAATTAA 1 cut(s) 397
PctI GAATGC 2 cut(s) 214, 356
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 2 cut(s) 113, 187
PspN4I GGNNCC 1 cut(s) 70
SaqAI TTAA 6 cut(s) 203, 263, 288, 368, 393, 397
SatI GCNGC 2 cut(s) 112, 186
SetI ASST 1 cut(s) 148
SfaNI GCATC 2 cut(s) 11, 324
Sse9I AATT 3 cut(s) 36, 87, 394
TasI AATT 3 cut(s) 36, 87, 394
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 6 cut(s) 203, 263, 288, 368, 393, 397
Tru9I TTAA 6 cut(s) 203, 263, 288, 368, 393, 397
TseI GCWGC 2 cut(s) 111, 185
TspDTI ATGAA 3 cut(s) 156, 163, 207
XceI RCATGY 9 cut(s) 121, 156, 214, 251, 279, 298, 315, 356, 384
Zsp2I ATGCAT 5 cut(s) 26, 216, 300, 317, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.