pycom889g00040

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000889
Physical Location & Seq
Forward (+)
55005 .. 56224
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom889g00040.4

Sequence Viewer

Length: 1086 bp
ATGCATTTTGGAGACTTTTGGAGCACTTTTGGTGAAAACCTAATTGAAGACCAAAGTGTTGGAACCTTGTTCCCTTTAGTTTTAGGATATTTAAACCTTTCCTATATCCTTAGTCGTCATACACTTATCTTATCATCACCACATATCATTCATTTATTACTTATCATATCATTCATTCATCTACATATCAATAACCACTTATCATTCATTTATTACTTATCATATCATTCATTCATCTACATATCAATAACCACTTATCTTATCACTCAACATATCATTCATTTATCACTCAACATATCATTCACTTATCACTTATCTTATCATTCACTTACCACTCAACATATCACTCAACATATCATACACTTATCATTTATCATACTCATAATTATCTACACATTACAACCTAAAACACATGCACATTCACCCACATGCACAAACACACATTATTGCCGTGCACATTCCATTGCACTCCTCCTTTCATTTTCAGCCACATTCCACATGCATTTGCACATGCATTCCCTCACCAAGAAATCATTCAACACATGCATTCACTCTTTAATCCACATGCATTCACACACACTTCACACAAACAACATTCACATGCAAACACAAGCTTTAACCAACAAACAAAACAGCCAACACATGCACCATTACACTATTGCCGTGAGTTTCATTCCATTTCCAACATCGTCACGTGCATTTCCAGCTTTCACATGCCTTCACATTCATTTCCAAACAATAATCACTTCAAATCACATGCACAAACATGCATTTTCAGCACCATTACACTATTGCCGTGAGTTTCATTCCATTTCCAACATCTTCACATGCATTTCCAGCTTTGCACATGCATTTCCCTTTCATTTCAACCCACATGCATCCTTTAATCATTCAAACATGCAGCCACATTCCCTCCTATCTTCCACAATTCATTCACAATTCCACACACAACACATCCAAACCCCCCCTTGTTGCCGTGAGTTCCCTTGTAATCCAAACACCATCTTTCCATTTCCATCACTCCTCACTCCATTCCACACTTCCATTCCCCCAAACCAACTATCCTTAGACCTTATGCTACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

362

Amino Acids

41.79

Weight (kDa)

8.39

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 695
AgsI TTSAA 5 cut(s) 47, 538, 750, 868, 894
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AluBI AGCT 3 cut(s) 614, 707, 840
AluI AGCT 3 cut(s) 614, 707, 840
Alw21I GWGCWC 2 cut(s) 26, 457
Alw26I GTCTC 1 cut(s) 6
Alw44I GTGCAC 1 cut(s) 453
ApaLI GTGCAC 1 cut(s) 453
ApeKI GCWGC 1 cut(s) 901
Asp700I GAANNNNTTC 1 cut(s) 533
AsuHPI GGTGA 4 cut(s) 44, 129, 414, 514
BaeGI GKGCMC 1 cut(s) 457
BbrPI CACGTG 1 cut(s) 695
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 26, 457
BbvI GCAGC 1 cut(s) 913
BccI CCATC 2 cut(s) 1010, 1024
BceAI ACGGC 4 cut(s) 435, 647, 780, 960
BcoDI GTCTC 1 cut(s) 6
BisI GCNGC 1 cut(s) 902
BlsI GCNGC 1 cut(s) 903
BmiI GGNNCC 1 cut(s) 64
BmsI GCATC 1 cut(s) 887
BpiI GAAGAC 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 695
BsaXI ACNNNNNCTCC 2 cut(s) 897, 927
Bse3DI GCAATG 1 cut(s) 462
BseGI GGATG 2 cut(s) 878, 954
BseMI GCAATG 1 cut(s) 462
BseRI GAGGAG 2 cut(s) 461, 1013
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 1 cut(s) 913
BsiHKAI GWGCWC 2 cut(s) 26, 457
BsmAI GTCTC 1 cut(s) 6
BsmI GAATGC 3 cut(s) 514, 546, 568
Bsp1286I GDGCHC 2 cut(s) 26, 457
BspLI GGNNCC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 462
BstBAI YACGTR 1 cut(s) 695
BstDEI CTNAG 2 cut(s) 110, 1066
BstF5I GGATG 2 cut(s) 878, 954
BstMAI GTCTC 1 cut(s) 6
BstMWI GCNNNNNNNGC 3 cut(s) 704, 776, 837
BstSLI GKGCMC 1 cut(s) 457
BstV1I GCAGC 1 cut(s) 913
BstV2I GAAGAC 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 59
BtsCI GGATG 2 cut(s) 878, 954
CviJI RGCY 6 cut(s) 488, 614, 636, 707, 840, 904
CviKI_1 RGCY 6 cut(s) 488, 614, 636, 707, 840, 904
DdeI CTNAG 2 cut(s) 110, 1066
DraI TTTAAA 1 cut(s) 93
Eco72I CACGTG 1 cut(s) 695
EcoT22I ATGCAT 9 cut(s) 6, 504, 516, 548, 570, 772, 833, 853, 880
Fnu4HI GCNGC 1 cut(s) 902
FokI GGATG 2 cut(s) 865, 941
Fsp4HI GCNGC 1 cut(s) 902
GluI GCNGC 1 cut(s) 902
HindIII AAGCTT 1 cut(s) 612
HphI GGTGA 4 cut(s) 44, 129, 414, 514
Hpy166II GTNNAC 1 cut(s) 455
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 728
HpyCH4IV ACGT 1 cut(s) 694
HpyF10VI GCNNNNNNNGC 3 cut(s) 704, 776, 837
HpyF3I CTNAG 2 cut(s) 110, 1066
HpySE526I ACGT 1 cut(s) 694
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 2 cut(s) 717, 850
Lsp1109I GCAGC 1 cut(s) 913
LweI GCATC 1 cut(s) 887
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 1 cut(s) 690
MboII GAAGA 3 cut(s) 59, 814, 912
MhlI GDGCHC 2 cut(s) 26, 457
MluCI AATT 4 cut(s) 42, 384, 927, 938
MmeI TCCRAC 3 cut(s) 40, 707, 840
MnlI CCTC 4 cut(s) 482, 530, 923, 1034
Mph1103I ATGCAT 9 cut(s) 6, 504, 516, 548, 570, 772, 833, 853, 880
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 4 cut(s) 92, 557, 617, 885
MslI CAYNNNNRTG 3 cut(s) 427, 599, 765
Mva1269I GAATGC 3 cut(s) 514, 546, 568
MwoI GCNNNNNNNGC 3 cut(s) 704, 776, 837
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 690
NsiI ATGCAT 9 cut(s) 6, 504, 516, 548, 570, 772, 833, 853, 880
PctI GAATGC 3 cut(s) 514, 546, 568
PdmI GAANNNNTTC 1 cut(s) 533
PkrI GCNGC 1 cut(s) 903
PmaCI CACGTG 1 cut(s) 695
PmlI CACGTG 1 cut(s) 695
Ppu21I YACGTR 1 cut(s) 695
PspCI CACGTG 1 cut(s) 695
PspN4I GGNNCC 1 cut(s) 64
RseI CAYNNNNRTG 3 cut(s) 427, 599, 765
SaqAI TTAA 4 cut(s) 92, 557, 617, 885
SatI GCNGC 1 cut(s) 902
SduI GDGCHC 2 cut(s) 26, 457
SetI ASST 9 cut(s) 42, 68, 99, 406, 616, 697, 709, 842, 1074
SfaNI GCATC 1 cut(s) 887
SmiMI CAYNNNNRTG 3 cut(s) 427, 599, 765
Sse9I AATT 4 cut(s) 42, 384, 927, 938
TaiI ACGT 1 cut(s) 697
TasI AATT 4 cut(s) 42, 384, 927, 938
Tru1I TTAA 4 cut(s) 92, 557, 617, 885
Tru9I TTAA 4 cut(s) 92, 557, 617, 885
TseFI GTSAC 1 cut(s) 690
TseI GCWGC 1 cut(s) 901
Tsp45I GTSAC 1 cut(s) 690
VneI GTGCAC 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 533
Zsp2I ATGCAT 9 cut(s) 6, 504, 516, 548, 570, 772, 833, 853, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.