pycom520g00480

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_520
Physical Location & Seq
Forward (+)
392340 .. 393033
694 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom520g00480.2

Sequence Viewer

Length: 600 bp
ATGCTTGGCGCCAAAGTGTTGGACGAAATTGAAGACCTAATTGAAGACCAAAGTGTTGGAACCTTGTTCCCTTTAGTTTTAGGACAGTTAAACCTTTCCAATTCCCTTATGCCGTGCATCTCCACAATCCCATTCATCAACACATGCATTCACATGCTTTCACAACCTAATCCACATGCACATTCATCCACCTTTCTCCCAAAACCGTACACATGCATTCATTATTCATTCACTTTCATACACTTATCATCACCACTTATCACTTATCACTTAACATGCACCCTAGATTCTAATCAGCCACTCCACATGCATTTCCAACCTAATTCACATGCATTCCATCCCTTAAAACATTCCACATACACTCATAATCATTCACACATTGCAGCCACATGCATTTCCCTTTTCATTTCCAGATTGTCCCCTTGCACATGTAGCCACATATTCATTGCACATGCATTTCCACCCACATACTCATCCATTGCAGAAAATCACCCATTCACACATCAAAACTGCCCTTTGGCCGTGAGTTTCCCTATCAATCCAAACACCATCACTTCCTTCACCATTCCACAAAAACCTATCATTCTACATCATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.26

Weight (kDa)

6.68

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 519
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 428
AgsI TTSAA 2 cut(s) 32, 44
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 1 cut(s) 383
AspLEI GCGC 1 cut(s) 11
AsuHPI GGTGA 3 cut(s) 243, 482, 553
BanI GGYRCC 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 39, 51
BbvI GCAGC 1 cut(s) 395
BccI CCATC 2 cut(s) 345, 557
BceAI ACGGC 2 cut(s) 97, 506
BfaI CTAG 1 cut(s) 284
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
BmiI GGNNCC 2 cut(s) 10, 61
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 2 cut(s) 39, 51
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 9
Bse3DI GCAATG 3 cut(s) 378, 444, 477
Bse8I GATNNNNATC 1 cut(s) 291
BseGI GGATG 4 cut(s) 185, 337, 473, 592
BseJI GATNNNNATC 1 cut(s) 291
BseMI GCAATG 3 cut(s) 378, 444, 477
BseXI GCAGC 1 cut(s) 395
BshFI GGCC 1 cut(s) 521
BshNI GGYRCC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 403
BsmI GAATGC 3 cut(s) 147, 216, 332
BsnI GGCC 1 cut(s) 521
BspANI GGCC 1 cut(s) 521
BspLI GGNNCC 2 cut(s) 10, 61
BspT107I GGYRCC 1 cut(s) 8
BsrDI GCAATG 3 cut(s) 378, 444, 477
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 87, 207
BstACI GRCGYC 1 cut(s) 9
BstF5I GGATG 4 cut(s) 185, 337, 473, 592
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 2 cut(s) 39, 51
BstXI CCANNNNNNTGG 2 cut(s) 19, 56
BsuRI GGCC 1 cut(s) 521
BtsCI GGATG 4 cut(s) 185, 337, 473, 592
CfoI GCGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 208
CviJI RGCY 4 cut(s) 298, 386, 435, 521
CviKI_1 RGCY 4 cut(s) 298, 386, 435, 521
CviQI GTAC 1 cut(s) 208
DinI GGCGCC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 519
EcoT22I ATGCAT 6 cut(s) 149, 218, 312, 334, 395, 457
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
FaqI GGGAC 1 cut(s) 403
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 4 cut(s) 172, 324, 460, 579
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 384
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 1 cut(s) 521
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 9
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 1 cut(s) 287
HphI GGTGA 3 cut(s) 243, 482, 553
Hpy166II GTNNAC 1 cut(s) 210
Hpy188III TCNNGA 1 cut(s) 411
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 2 cut(s) 87, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 432
Hsp92I GRCGYC 1 cut(s) 9
HspAI GCGC 1 cut(s) 9
KasI GGCGCC 1 cut(s) 8
LpnPI CCDG 1 cut(s) 424
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 284
MboII GAAGA 2 cut(s) 44, 56
MluCI AATT 4 cut(s) 27, 39, 100, 322
Mly113I GGCGCC 1 cut(s) 9
MmeI TCCRAC 2 cut(s) 37, 340
Mph1103I ATGCAT 6 cut(s) 149, 218, 312, 334, 395, 457
MseI TTAA 3 cut(s) 89, 272, 344
MslI CAYNNNNRTG 1 cut(s) 152
Mva1269I GAATGC 3 cut(s) 147, 216, 332
MwoI GCNNNNNNNGC 1 cut(s) 432
NarI GGCGCC 1 cut(s) 9
NlaIV GGNNCC 2 cut(s) 10, 61
NsiI ATGCAT 6 cut(s) 149, 218, 312, 334, 395, 457
PciI ACATGT 1 cut(s) 428
PctI GAATGC 3 cut(s) 147, 216, 332
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 385
PluTI GGCGCC 1 cut(s) 12
PscI ACATGT 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 10, 61
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 3 cut(s) 89, 272, 344
SatI GCNGC 1 cut(s) 384
SetI ASST 7 cut(s) 39, 65, 96, 169, 194, 322, 580
SfaNI GCATC 1 cut(s) 126
SfoI GGCGCC 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 4 cut(s) 27, 39, 100, 322
SspDI GGCGCC 1 cut(s) 8
SspMI CTAG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 87, 207
TasI AATT 4 cut(s) 27, 39, 100, 322
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 3 cut(s) 89, 272, 344
Tru9I TTAA 3 cut(s) 89, 272, 344
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 7 cut(s) 124, 174, 209, 216, 226, 394, 433
XspI CTAG 1 cut(s) 284
Zsp2I ATGCAT 6 cut(s) 149, 218, 312, 334, 395, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.