pycom1844g00090

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001844
Physical Location & Seq
Forward (+)
146662 .. 147238
577 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1844g00090.1

Sequence Viewer

Length: 462 bp
ATGCACTCTCATTCTTTAATCCATTCAGCCACAAGACATTATCATCGCACCACATTCAGCCATTCCATCTCCCATTTCAGATTGCATCCCAATCATTCCAACCAAATCACATCATTCAACCAACCTAGCTGTCATGTTTCCCCTTTCATCATTCCCTCACATTCTTTAATTCAGCCAACACATGCTTACACATGCATTTCCAACCCACATGCATCCTTTAATCATTCAAACATGCAGCCACATTCCCTCCTAGCTGTCATTCGTCCATATTCAGAAAATCATCCAAAACACCACCAGAAATCATCCCCTTGTGCCGTGAGTATCCCTGCTAATCCAAACACCACTCCAACCACTCCCCATCCCTCCAAAACACTTCACACTATCCCAAAACACACCTTAGACCTTGTGATACAACAACGAGGAAGAGAAGAGTGCCTAACCGTTCATACAATTCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.29

Weight (kDa)

9.56

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 118, 228, 455
AluBI AGCT 2 cut(s) 129, 254
AluI AGCT 2 cut(s) 129, 254
ApeKI GCWGC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 247
BccI CCATC 2 cut(s) 74, 366
BceAI ACGGC 1 cut(s) 299
BciVI GTATCC 1 cut(s) 332
BfaI CTAG 2 cut(s) 126, 251
BfuI GTATCC 1 cut(s) 332
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmsI GCATC 2 cut(s) 94, 221
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
BseGI GGATG 5 cut(s) 85, 212, 280, 302, 358
BseXI GCAGC 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 2 cut(s) 418, 423
BstDEI CTNAG 1 cut(s) 397
BstF5I GGATG 5 cut(s) 85, 212, 280, 302, 358
BstNSI RCATGY 4 cut(s) 185, 195, 212, 235
BstV1I GCAGC 1 cut(s) 247
BsuI GTATCC 1 cut(s) 332
BtgZI GCGATG 1 cut(s) 29
BtsCI GGATG 5 cut(s) 85, 212, 280, 302, 358
CviAII CATG 5 cut(s) 134, 182, 192, 209, 232
CviJI RGCY 6 cut(s) 29, 60, 129, 175, 238, 254
CviKI_1 RGCY 6 cut(s) 29, 60, 129, 175, 238, 254
DdeI CTNAG 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 418, 423
EarI CTCTTC 2 cut(s) 418, 423
EcoT22I ATGCAT 2 cut(s) 197, 214
FaeI CATG 5 cut(s) 137, 185, 195, 212, 235
FaiI YATR 7 cut(s) 135, 183, 193, 210, 233, 268, 447
FatI CATG 5 cut(s) 133, 181, 191, 208, 231
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 5 cut(s) 72, 199, 267, 289, 345
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 2 cut(s) 126, 251
GluI GCNGC 1 cut(s) 236
Hin1II CATG 5 cut(s) 137, 185, 195, 212, 235
Hpy188I TCNGA 2 cut(s) 80, 274
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 5 cut(s) 4, 85, 195, 212, 235
HpyF3I CTNAG 1 cut(s) 397
Hsp92II CATG 5 cut(s) 137, 185, 195, 212, 235
LpnPI CCDG 2 cut(s) 308, 339
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 2 cut(s) 94, 221
MaeI CTAG 2 cut(s) 126, 251
MboII GAAGA 2 cut(s) 435, 440
MluCI AATT 2 cut(s) 168, 450
MmeI TCCRAC 3 cut(s) 123, 225, 371
MnlI CCTC 4 cut(s) 166, 257, 373, 413
Mph1103I ATGCAT 2 cut(s) 197, 214
MseI TTAA 3 cut(s) 17, 167, 219
NlaIII CATG 5 cut(s) 137, 185, 195, 212, 235
NsiI ATGCAT 2 cut(s) 197, 214
NspI RCATGY 4 cut(s) 185, 195, 212, 235
PkrI GCNGC 1 cut(s) 237
SaqAI TTAA 3 cut(s) 17, 167, 219
SatI GCNGC 1 cut(s) 236
SetI ASST 5 cut(s) 127, 131, 256, 398, 405
SfaNI GCATC 2 cut(s) 94, 221
Sse9I AATT 2 cut(s) 168, 450
SspMI CTAG 2 cut(s) 126, 251
TaaI ACNGT 1 cut(s) 442
TasI AATT 2 cut(s) 168, 450
Tru1I TTAA 3 cut(s) 17, 167, 219
Tru9I TTAA 3 cut(s) 17, 167, 219
TseI GCWGC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 136, 434
XceI RCATGY 4 cut(s) 185, 195, 212, 235
XspI CTAG 2 cut(s) 126, 251
Zsp2I ATGCAT 2 cut(s) 197, 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.