pycom01g01410

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
1351424 .. 1352166
743 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g01410.3

Sequence Viewer

Length: 534 bp
ATGCACACCCACCTCTTTCCACCTAATCCACATCACCCAACACTCCCCTTGGCCCCACATGCAACTCTTCATCATTCATCCACCATCATTTCTTCCCCCCCTTTTGCCGTGCATTGCACATCAACACATTCCAGCATTTCCACATGCATTCCCTTTACAATTTCAGCAATTCCACATGCATTTCCAACCCACATGCACCCTTTAATCATTCAACCATGCAGCACACATCACCAACACACCCTTTGCCGTCCAAAACACATTCAATTTCAGCCATTCCACATGCATTTCCAACCTAACAAACAGCCACATTCACATGTTCCCTCTCATTTACCTATAAATAAGCATCCGTGCATATCCTTCCATTTCTGTGCAGTTTTTCTCCTCCATTGCAGCCACTATCCAACCACTTCCCATCCCTCCAAAACACTTCACATAATCCCCAAAGCTCACCTTAGACCTTGTGCTACAACAACGAGGAAGAGAAGAGTGCCTAAACGTTCATACAATTCAAGTTTGAGTTGTTGGAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.12

Weight (kDa)

9.9

Isoelectric Point (pI)

71.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 496
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 3 cut(s) 212, 263, 510
AluBI AGCT 1 cut(s) 446
AluI AGCT 1 cut(s) 446
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 219, 390
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 3 cut(s) 26, 221, 440
BbvI GCAGC 2 cut(s) 231, 402
BccI CCATC 2 cut(s) 92, 420
BceAI ACGGC 2 cut(s) 92, 231
BisI GCNGC 2 cut(s) 220, 391
BlsI GCNGC 2 cut(s) 221, 392
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 54
BmsI GCATC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 48
Bse3DI GCAATG 2 cut(s) 112, 385
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 3 cut(s) 77, 343, 412
BseMI GCAATG 2 cut(s) 112, 385
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 2 cut(s) 231, 402
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 1 cut(s) 53
BspANI GGCC 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 54
BsrDI GCAATG 2 cut(s) 112, 385
BssECI CCNNGG 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 48
Bst6I CTCTTC 3 cut(s) 72, 473, 478
BstDEI CTNAG 1 cut(s) 452
BstF5I GGATG 3 cut(s) 77, 343, 412
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNSI RCATGY 6 cut(s) 62, 147, 179, 196, 283, 317
BstV1I GCAGC 2 cut(s) 231, 402
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 3 cut(s) 77, 343, 412
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 7 cut(s) 59, 144, 176, 193, 216, 280, 314
CviJI RGCY 5 cut(s) 53, 271, 304, 393, 446
CviKI_1 RGCY 5 cut(s) 53, 271, 304, 393, 446
DdeI CTNAG 1 cut(s) 452
Eam1104I CTCTTC 3 cut(s) 72, 473, 478
EarI CTCTTC 3 cut(s) 72, 473, 478
Eco130I CCWWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 3 cut(s) 149, 181, 285
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 7 cut(s) 62, 147, 179, 196, 219, 283, 317
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FatI CATG 7 cut(s) 58, 143, 175, 192, 215, 279, 313
Fnu4HI GCNGC 2 cut(s) 220, 391
FokI GGATG 3 cut(s) 64, 330, 399
Fsp4HI GCNGC 2 cut(s) 220, 391
GluI GCNGC 2 cut(s) 220, 391
HaeIII GGCC 1 cut(s) 53
Hin1II CATG 7 cut(s) 62, 147, 179, 196, 219, 283, 317
HphI GGTGA 3 cut(s) 26, 221, 440
HpyAV CCTTC 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 452
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 7 cut(s) 62, 147, 179, 196, 219, 283, 317
LpnPI CCDG 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 231, 402
LweI GCATC 1 cut(s) 352
MaeII ACGT 1 cut(s) 496
MboII GAAGA 4 cut(s) 59, 84, 490, 495
MluCI AATT 4 cut(s) 159, 168, 263, 505
MmeI TCCRAC 4 cut(s) 209, 313, 425, 503
MnlI CCTC 5 cut(s) 23, 331, 392, 427, 468
Mph1103I ATGCAT 3 cut(s) 149, 181, 285
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 2 cut(s) 312, 366
Mva1269I GAATGC 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 59
NlaIII CATG 7 cut(s) 62, 147, 179, 196, 219, 283, 317
NlaIV GGNNCC 1 cut(s) 54
NsiI ATGCAT 3 cut(s) 149, 181, 285
NspI RCATGY 6 cut(s) 62, 147, 179, 196, 283, 317
PciI ACATGT 1 cut(s) 313
PctI GAATGC 1 cut(s) 147
PkrI GCNGC 2 cut(s) 221, 392
PscI ACATGT 1 cut(s) 313
Psp1406I AACGTT 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 52
RseI CAYNNNNRTG 2 cut(s) 312, 366
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 2 cut(s) 220, 391
Sau96I GGNCC 1 cut(s) 52
SetI ASST 8 cut(s) 15, 25, 295, 334, 448, 453, 460, 499
SfaNI GCATC 1 cut(s) 352
SmiMI CAYNNNNRTG 2 cut(s) 312, 366
Sse9I AATT 4 cut(s) 159, 168, 263, 505
StyI CCWWGG 1 cut(s) 48
TaiI ACGT 1 cut(s) 499
TasI AATT 4 cut(s) 159, 168, 263, 505
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TseI GCWGC 2 cut(s) 219, 390
TspDTI ATGAA 3 cut(s) 59, 66, 489
TspGWI ACGGA 1 cut(s) 336
XceI RCATGY 6 cut(s) 62, 147, 179, 196, 283, 317
Zsp2I ATGCAT 3 cut(s) 149, 181, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.