pycom01g04490

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
3354562 .. 3355362
801 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g04490.3

Sequence Viewer

Length: 699 bp
ATGCCATGCATAACACACATCCATTCTAACACATTGTCATTGCACATGCATTTCCTTCATTACATATCACATATCACTTATCAGTTATCATATCACTTATCACTCATCACTTATCACTTATCATATCACTTATCACCTATCATCATCACTTATCACTTATCACTTAACATGCACCCATCACCTAACACAACACCTTTAATTCACATGCATACCTATTCTTTAAATCAGCCACATGCATTCATATTCACCATCATTGCCGTGCACATTCCTTCCCATTTCCACCTTTCATTTCAGCCACATGTCTTCATCATTGCAGCCACCATTCACTCTTTAATCCACATGCATTCACACACACTTCACACAAACAGCAATCACATGCAAACACATGCATTTCCAACCCCAAACACCCAATGCCGTGAGTTCCCATTGCACTTCCAGCTTTGCACATGCATTCACTCACCACAAACAAGTCACATGCATTCATCAACATATCTAGCTGTCATTCACATGCATTTCATTCATCATTTCCACCCCCACATCAAACCATCTTTGTGCCGTGAGTCTCCCTTACAATCCAAACACCATCCTTCCATTTCCACCACTCCCCAAACCATTCACACCATCAAACTATCCCTAGACCTTGTGCTACAACGAAGAGGAAGAGAAGAGTGCCTAAACGTTCATACAATTCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.97

Weight (kDa)

8.6

Isoelectric Point (pI)

62.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 678
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 1 cut(s) 692
AluBI AGCT 2 cut(s) 439, 497
AluI AGCT 2 cut(s) 439, 497
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 567
Alw44I GTGCAC 1 cut(s) 260
ApaLI GTGCAC 1 cut(s) 260
ApeKI GCWGC 1 cut(s) 314
AsuHPI GGTGA 4 cut(s) 126, 171, 238, 450
BaeGI GKGCMC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 326
BccI CCATC 5 cut(s) 184, 257, 553, 591, 629
BceAI ACGGC 3 cut(s) 242, 399, 540
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 2 cut(s) 494, 635
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 295
Bse3DI GCAATG 4 cut(s) 38, 252, 309, 425
BseGI GGATG 2 cut(s) 18, 583
BseMI GCAATG 4 cut(s) 38, 252, 309, 425
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 567
BsmI GAATGC 4 cut(s) 236, 343, 450, 478
Bsp1286I GDGCHC 1 cut(s) 264
BsrDI GCAATG 4 cut(s) 38, 252, 309, 425
Bst6I CTCTTC 3 cut(s) 649, 655, 660
BstF5I GGATG 2 cut(s) 18, 583
BstMAI GTCTC 1 cut(s) 567
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstSLI GKGCMC 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 295
BtsCI GGATG 2 cut(s) 18, 583
CviJI RGCY 5 cut(s) 229, 295, 317, 439, 497
CviKI_1 RGCY 5 cut(s) 229, 295, 317, 439, 497
DraI TTTAAA 1 cut(s) 222
Eam1104I CTCTTC 3 cut(s) 649, 655, 660
EarI CTCTTC 3 cut(s) 649, 655, 660
EcoT22I ATGCAT 9 cut(s) 11, 51, 210, 238, 345, 391, 452, 480, 513
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 2 cut(s) 5, 570
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 2 cut(s) 494, 635
GluI GCNGC 1 cut(s) 315
HinfI GANTC 1 cut(s) 560
HphI GGTGA 4 cut(s) 126, 171, 238, 450
Hpy166II GTNNAC 1 cut(s) 262
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 3 cut(s) 65, 279, 597
HpyCH4IV ACGT 1 cut(s) 678
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
HpySE526I ACGT 1 cut(s) 678
LpnPI CCDG 1 cut(s) 449
Lsp1109I GCAGC 1 cut(s) 326
MaeI CTAG 2 cut(s) 494, 635
MaeII ACGT 1 cut(s) 678
MaeIII GTNAC 1 cut(s) 470
MboII GAAGA 4 cut(s) 295, 666, 672, 677
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 2 cut(s) 198, 687
MlyI GAGTC 1 cut(s) 569
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 1 cut(s) 650
Mph1103I ATGCAT 9 cut(s) 11, 51, 210, 238, 345, 391, 452, 480, 513
MseI TTAA 4 cut(s) 165, 197, 221, 332
MslI CAYNNNNRTG 3 cut(s) 257, 506, 550
Mva1269I GAATGC 4 cut(s) 236, 343, 450, 478
MwoI GCNNNNNNNGC 1 cut(s) 436
NmuCI GTSAC 1 cut(s) 470
NsiI ATGCAT 9 cut(s) 11, 51, 210, 238, 345, 391, 452, 480, 513
PciI ACATGT 1 cut(s) 298
PctI GAATGC 4 cut(s) 236, 343, 450, 478
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PscI ACATGT 1 cut(s) 298
Psp1406I AACGTT 1 cut(s) 678
RseI CAYNNNNRTG 3 cut(s) 257, 506, 550
SaqAI TTAA 4 cut(s) 165, 197, 221, 332
SatI GCNGC 1 cut(s) 315
SchI GAGTC 1 cut(s) 569
SduI GDGCHC 1 cut(s) 264
SetI ASST 9 cut(s) 139, 184, 196, 215, 285, 441, 499, 642, 681
SmiMI CAYNNNNRTG 3 cut(s) 257, 506, 550
Sse9I AATT 2 cut(s) 198, 687
SspMI CTAG 2 cut(s) 494, 635
TaiI ACGT 1 cut(s) 681
TasI AATT 2 cut(s) 198, 687
Tru1I TTAA 4 cut(s) 165, 197, 221, 332
Tru9I TTAA 4 cut(s) 165, 197, 221, 332
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 8 cut(s) 47, 229, 276, 295, 471, 505, 509, 671
VneI GTGCAC 1 cut(s) 260
XspI CTAG 2 cut(s) 494, 635
Zsp2I ATGCAT 9 cut(s) 11, 51, 210, 238, 345, 391, 452, 480, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.