pycom13g26550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001078
Physical Location & Seq
Forward (+)
23135087 .. 23136604
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g26550.7

Sequence Viewer

Length: 1062 bp
ATGTTTTGTTTGTTTTGTTTCGTCTTGTTTACTTTAGTTGTTTTGTTTTGCTCGAGGACTAGCAAAGTTATTTTAGTGTTTAAGGCCACTTTTGTGTATTTTCAGATTATAAGGCCAAAGTGTGCAAAAAGATGCAAATTGAAAAACGACGAATTCCTACTCAAACAAGGATTCCTACTTGAAGTAGGAAAGTTAACCCTAGGTTTCCCGTTTTGGCTTTGTAGGCACTTTAGGACACAAAACAATGGCCCTAGCCCAATTACACAACCTTGCCGTGGGTTTTTTCCTTCTCCCCTTCCCTTGCCGTGCAAGGGGGGTATTTTAGGCCCATTCTATCCATCTTCCACACCTTTCCAACCTAGCCGCACCCTACATGCATTAATTAGTCATTCTTTTCATATTGCAGCCACCATCATGCATATTCCCCTTCCATTCCATACACTTTCCACCAACCTAGCCGCACCCTTTAATCATTCACCCTACCGCAAGGATCCATTCATTCTTTCCCATATTCTCCTCTCTAATCCGCAACCTTCCCCCTTCATTCCAGCCATCTTCCACACCTTTCCCACCATTGCCACAGCCATCTCCACCCTTCCAGCCACCTTCCACACCTCCACACACCTTCCACCAACCTTGCCGCACCACCAAACCTCCCTAAATCCATCTCCACCCCAAAATAACATCCAAAACACCCTTAGACCATCTCTGCCGCAGCAAGGAGAAGAAGAAAGAGGAGCTTGGACGCGCAGAAATTCAAGTGGATTCGTTGTGCGTTCTAGGTGCAATCAATCTTTTGTTCGTTATCTAGGGGGTGATTCAAAACCATGTTTATGCTTGCAATATGATTTGATTACCTTTGGTTGGAATTTCATGTATTGTGGATTCAATTTGTTTAACTGTTTGATTGATAACTTATTTATGTATAGTTATGAATTACCAAAACCTCAGTTCGAATTCTCAGTTCGAAGTGAGTTTCACCTAATGATTGAGGCTGGCAGCCTAGATCCGGGAATCCCGCTTGCATGTGCTAAAAGTTGGAAAAAGGCTGGCGAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

39.98

Weight (kDa)

9.36

Isoelectric Point (pI)

62.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
AccII CGCG 1 cut(s) 748
AciI CCGC 7 cut(s) 364, 459, 484, 527, 641, 713, 1019
AclWI GGATC 3 cut(s) 485, 498, 1001
AcsI RAATTY 4 cut(s) 152, 754, 868, 956
AfiI CCNNNNNNNGG 5 cut(s) 275, 311, 719, 864, 1009
AgsI TTSAA 5 cut(s) 142, 182, 759, 822, 889
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 1 cut(s) 740
AluI AGCT 1 cut(s) 740
AlwI GGATC 3 cut(s) 485, 498, 1001
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 4 cut(s) 84, 113, 247, 325
ApeKI GCWGC 3 cut(s) 404, 715, 999
ApoI RAATTY 4 cut(s) 152, 754, 868, 956
AseI ATTAAT 1 cut(s) 380
AspA2I CCTAGG 1 cut(s) 199
AspLEI GCGC 1 cut(s) 750
AspS9I GGNCC 2 cut(s) 248, 326
AsuC2I CCSGG 1 cut(s) 1011
AsuHPI GGTGA 3 cut(s) 468, 827, 971
AsuII TTCGAA 2 cut(s) 954, 967
AvaI CYCGRG 1 cut(s) 52
AvrII CCTAGG 1 cut(s) 199
BamHI GGATCC 1 cut(s) 490
BbvI GCAGC 3 cut(s) 416, 727, 1011
BccI CCATC 6 cut(s) 346, 419, 560, 593, 673, 712
BceAI ACGGC 2 cut(s) 258, 289
BcnI CCSGG 1 cut(s) 1011
BfaI CTAG 8 cut(s) 60, 200, 252, 360, 455, 780, 809, 1004
BisI GCNGC 7 cut(s) 364, 405, 459, 641, 713, 716, 1000
BlnI CCTAGG 1 cut(s) 199
BlsI GCNGC 7 cut(s) 365, 406, 460, 642, 714, 717, 1001
Bme1390I CCNGG 1 cut(s) 1011
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 248, 326
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 1011
BmsI GCATC 1 cut(s) 122
Bpu14I TTCGAA 2 cut(s) 954, 967
BpuMI CCSGG 1 cut(s) 1011
BsaJI CCNNGG 2 cut(s) 199, 274
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 5 cut(s) 275, 311, 719, 864, 1009
Bse3DI GCAATG 1 cut(s) 573
BseDI CCNNGG 2 cut(s) 199, 274
BseGI GGATG 1 cut(s) 684
BseLI CCNNNNNNNGG 5 cut(s) 275, 311, 719, 864, 1009
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 2 cut(s) 962, 975
BseRI GAGGAG 2 cut(s) 506, 750
BseXI GCAGC 3 cut(s) 416, 727, 1011
Bsh1236I CGCG 1 cut(s) 748
BshFI GGCC 4 cut(s) 86, 115, 249, 327
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 1010
BslI CCNNNNNNNGG 5 cut(s) 275, 311, 719, 864, 1009
BsnI GGCC 4 cut(s) 86, 115, 249, 327
BsoBI CYCGRG 1 cut(s) 52
Bsp119I TTCGAA 2 cut(s) 954, 967
Bsp143I GATC 2 cut(s) 490, 1006
BspACI CCGC 7 cut(s) 364, 459, 484, 527, 641, 713, 1019
BspANI GGCC 4 cut(s) 86, 115, 249, 327
BspCNI CTCAG 2 cut(s) 961, 974
BspFNI CGCG 1 cut(s) 748
BspLI GGNNCC 1 cut(s) 492
BspPI GGATC 3 cut(s) 485, 498, 1001
BspT104I TTCGAA 2 cut(s) 954, 967
BsrDI GCAATG 1 cut(s) 573
BssECI CCNNGG 2 cut(s) 199, 274
BssMI GATC 2 cut(s) 490, 1006
BssT1I CCWWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 902
BstBI TTCGAA 2 cut(s) 954, 967
BstC8I GCNNGC 4 cut(s) 839, 997, 1023, 1051
BstDEI CTNAG 3 cut(s) 698, 948, 961
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 684
BstFNI CGCG 1 cut(s) 748
BstHHI GCGC 1 cut(s) 750
BstKTI GATC 2 cut(s) 493, 1009
BstMBI GATC 2 cut(s) 490, 1006
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNSI RCATGY 2 cut(s) 377, 1029
BstSCI CCNGG 1 cut(s) 1009
BstUI CGCG 1 cut(s) 748
BstV1I GCAGC 3 cut(s) 416, 727, 1011
BstX2I RGATCY 2 cut(s) 490, 1006
BstYI RGATCY 2 cut(s) 490, 1006
BsuRI GGCC 4 cut(s) 86, 115, 249, 327
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 684
Cac8I GCNNGC 4 cut(s) 839, 997, 1023, 1051
CfoI GCGC 1 cut(s) 750
Cfr13I GGNCC 2 cut(s) 248, 326
CseI GACGC 1 cut(s) 754
CspCI CAANNNNNGTGG 2 cut(s) 618, 653
CviAII CATG 5 cut(s) 374, 415, 828, 874, 1026
DdeI CTNAG 3 cut(s) 698, 948, 961
DpnI GATC 2 cut(s) 492, 1008
DpnII GATC 2 cut(s) 490, 1006
Eco130I CCWWGG 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 52
EcoRI GAATTC 2 cut(s) 152, 956
EcoT14I CCWWGG 1 cut(s) 199
EcoT22I ATGCAT 2 cut(s) 379, 420
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 5 cut(s) 377, 418, 831, 877, 1029
FalI AAGNNNNNCTT 2 cut(s) 724, 756
FatI CATG 5 cut(s) 373, 414, 827, 873, 1025
FauI CCCGC 1 cut(s) 1026
Fnu4HI GCNGC 7 cut(s) 364, 405, 459, 641, 713, 716, 1000
FokI GGATG 1 cut(s) 671
Fsp4HI GCNGC 7 cut(s) 364, 405, 459, 641, 713, 716, 1000
FspBI CTAG 8 cut(s) 60, 200, 252, 360, 455, 780, 809, 1004
GlaI GCGC 1 cut(s) 749
GluI GCNGC 7 cut(s) 364, 405, 459, 641, 713, 716, 1000
HaeIII GGCC 4 cut(s) 86, 115, 249, 327
HapII CCGG 1 cut(s) 1010
HgaI GACGC 1 cut(s) 754
HhaI GCGC 1 cut(s) 750
Hin1II CATG 5 cut(s) 377, 418, 831, 877, 1029
Hin6I GCGC 1 cut(s) 748
HinP1I GCGC 1 cut(s) 748
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 5 cut(s) 171, 765, 818, 885, 1014
HpaI GTTAAC 1 cut(s) 195
HpaII CCGG 1 cut(s) 1010
HphI GGTGA 3 cut(s) 468, 827, 971
Hpy166II GTNNAC 2 cut(s) 30, 195
Hpy188I TCNGA 1 cut(s) 105
Hpy8I GTNNAC 2 cut(s) 30, 195
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 8 cut(s) 297, 305, 437, 543, 550, 605, 616, 635
HpyCH4III ACNGT 1 cut(s) 902
HpyCH4V TGCA 9 cut(s) 125, 135, 309, 377, 404, 418, 786, 841, 1025
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 3 cut(s) 698, 948, 961
Hsp92II CATG 5 cut(s) 377, 418, 831, 877, 1029
HspAI GCGC 1 cut(s) 748
KspAI GTTAAC 1 cut(s) 195
Kzo9I GATC 2 cut(s) 490, 1006
LmnI GCTCC 1 cut(s) 737
LpnPI CCDG 5 cut(s) 561, 612, 981, 1023, 1035
Lsp1109I GCAGC 3 cut(s) 416, 727, 1011
LweI GCATC 1 cut(s) 122
MaeI CTAG 8 cut(s) 60, 200, 252, 360, 455, 780, 809, 1004
MalI GATC 2 cut(s) 492, 1008
MboI GATC 2 cut(s) 490, 1006
MboII GAAGA 4 cut(s) 333, 547, 737, 740
MflI RGATCY 2 cut(s) 490, 1006
MmeI TCCRAC 3 cut(s) 379, 845, 1019
MnlI CCTC 7 cut(s) 48, 527, 625, 664, 728, 957, 985
Mph1103I ATGCAT 2 cut(s) 379, 420
MseI TTAA 5 cut(s) 81, 194, 380, 468, 897
MslI CAYNNNNRTG 3 cut(s) 92, 413, 832
MspI CCGG 1 cut(s) 1010
MspR9I CCNGG 1 cut(s) 1011
MvnI CGCG 1 cut(s) 748
MwoI GCNNNNNNNGC 1 cut(s) 223
NciI CCSGG 1 cut(s) 1011
NdeII GATC 2 cut(s) 490, 1006
NlaIII CATG 5 cut(s) 377, 418, 831, 877, 1029
NlaIV GGNNCC 1 cut(s) 492
NsiI ATGCAT 2 cut(s) 379, 420
NspI RCATGY 2 cut(s) 377, 1029
NspV TTCGAA 2 cut(s) 954, 967
OliI CACNNNNGTG 1 cut(s) 92
PaeR7I CTCGAG 1 cut(s) 52
PfeI GAWTC 5 cut(s) 171, 765, 818, 885, 1014
PfoI TCCNGGA 1 cut(s) 1009
PkrI GCNGC 7 cut(s) 365, 406, 460, 642, 714, 717, 1001
PshBI ATTAAT 1 cut(s) 380
PsiI TTATAA 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 2 cut(s) 248, 326
PspXI VCTCGAGB 1 cut(s) 52
PsuI RGATCY 2 cut(s) 490, 1006
RseI CAYNNNNRTG 3 cut(s) 92, 413, 832
SaqAI TTAA 5 cut(s) 81, 194, 380, 468, 897
SatI GCNGC 7 cut(s) 364, 405, 459, 641, 713, 716, 1000
Sau3AI GATC 2 cut(s) 490, 1006
Sau96I GGNCC 2 cut(s) 248, 326
ScrFI CCNGG 1 cut(s) 1011
SfaNI GCATC 1 cut(s) 122
Sfr274I CTCGAG 1 cut(s) 52
SfuI TTCGAA 2 cut(s) 954, 967
SlaI CTCGAG 1 cut(s) 52
SmiMI CAYNNNNRTG 3 cut(s) 92, 413, 832
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SsiI CCGC 7 cut(s) 364, 459, 484, 527, 641, 713, 1019
SspMI CTAG 8 cut(s) 60, 200, 252, 360, 455, 780, 809, 1004
StyD4I CCNGG 1 cut(s) 1009
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 902
TaqI TCGA 3 cut(s) 53, 954, 967
TauI GCSGC 4 cut(s) 366, 461, 643, 715
TfiI GAWTC 5 cut(s) 171, 765, 818, 885, 1014
Tru1I TTAA 5 cut(s) 81, 194, 380, 468, 897
Tru9I TTAA 5 cut(s) 81, 194, 380, 468, 897
TseI GCWGC 3 cut(s) 404, 715, 999
TspDTI ATGAA 5 cut(s) 386, 487, 532, 862, 948
VspI ATTAAT 1 cut(s) 380
XapI RAATTY 4 cut(s) 152, 754, 868, 956
XceI RCATGY 2 cut(s) 377, 1029
XhoI CTCGAG 1 cut(s) 52
XmaJI CCTAGG 1 cut(s) 199
XspI CTAG 8 cut(s) 60, 200, 252, 360, 455, 780, 809, 1004
Zsp2I ATGCAT 2 cut(s) 379, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.