pycom520g00200

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_520
Physical Location & Seq
Forward (+)
185484 .. 186789
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom520g00200.3

Sequence Viewer

Length: 1065 bp
ATGGCTTGTTCTCGTGCATTTACGTTATGTTTCTTTAGTTATTTTAGTCCTTTAAGCTATTTTCGTGTGTTTCTTATGCTTGGCGCCAAAGTGTTGGAAGAAATTGAAGACCTAATTGAAGACCAAAGTGTTGGAACCTTGTTCCCTTTAGTTTTAGGACATTTAAACCTTTCCAATTTCCTTACCACACTCCCACATATCATTACTTATCATCACCACTTATCACATATCATAACCACATATCATATCACTTATCATAATCACTTATCACTTATCATCATCACTTATCATATCACTTATCATAACCATACACTTATCACTTATCATACTCATAATCATTCACACCTTGCAGCCACATGCATTCCCCTTTTGCACATGCTTTCCCAATTCATTAAAACATTGCACATGCACTCCCATCCTTTACCATTGCAGCCACATGCACTTCCCACTTCATCATTTCAGCCACACATTCACCCACATGCACTTTGCCTTTCATCATTGCACCACAAATCAGCACATTCACCTTCATTTCCAGATTGTCCCCTTGCACATGCAGCCACATATTCATTTACACCATCACACATTCATTCTCCATCCCTTGCCGTGAGTTCCCATCAGATTTCCAGCATATTCACATGCATTCCATCCTTTAAAACATTTGCACATGCATCTTCAATTAAATCAGCCACATGCATTCATAAAACCCTTGTGCCGTCCAAAACACATGCATTATCAGCACATGCATCTCCCATCACCATTCCAGATTTCCACCACCCTCCTAGCTGTCATGTTCCCCCCATTTCACCTATAAATAAACCTTCATTGCAGCCACAAAGGAGGGGATCCATTCACCACAGAAATAAGGCCTTTGTAAACACCACCAAAAACCATCCCTTGGTGCCGTGCCTTAAGGCACCATTCCATCACTTCCCTATTAATCCAAACACCACTCCCCAAACCATTCACACCACCAAACCTCACCTTAGACCTTGTGCTACAACAACGAGGAAGAGAAGAGTGCCTAAACGTTCATACAATTCAAGTTTGAGTTGTTGGAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.88

Weight (kDa)

9.56

Isoelectric Point (pI)

67.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 83, 898, 913
AccB7I CCANNNNNTGG 1 cut(s) 895
AclI AACGTT 1 cut(s) 1027
AclWI GGATC 2 cut(s) 837, 850
AcyI GRCGYC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 895
AflII CTTAAG 1 cut(s) 908
AgsI TTSAA 4 cut(s) 107, 119, 675, 1041
AluBI AGCT 2 cut(s) 57, 783
AluI AGCT 2 cut(s) 57, 783
AlwI GGATC 2 cut(s) 837, 850
AoxI GGCC 1 cut(s) 864
ApeKI GCWGC 4 cut(s) 350, 430, 554, 826
AseI ATTAAT 1 cut(s) 936
AspLEI GCGC 1 cut(s) 86
AsuHPI GGTGA 7 cut(s) 206, 464, 513, 745, 795, 842, 971
BamHI GGATCC 1 cut(s) 842
BanI GGYRCC 3 cut(s) 83, 898, 913
BauI CACGAG 1 cut(s) 12
BbsI GAAGAC 2 cut(s) 114, 126
BbvI GCAGC 4 cut(s) 362, 442, 566, 838
BccI CCATC 8 cut(s) 423, 583, 601, 621, 652, 758, 897, 930
BceAI ACGGC 3 cut(s) 587, 697, 886
BfaI CTAG 1 cut(s) 780
BfoI RGCGCY 1 cut(s) 87
BfrI CTTAAG 1 cut(s) 908
BisI GCNGC 4 cut(s) 351, 431, 555, 827
BlsI GCNGC 4 cut(s) 352, 432, 556, 828
BmiI GGNNCC 5 cut(s) 85, 136, 844, 900, 915
BmsI GCATC 2 cut(s) 677, 752
BpiI GAAGAC 2 cut(s) 114, 126
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 894
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 1 cut(s) 895
Bse3DI GCAATG 4 cut(s) 398, 425, 497, 821
BseDI CCNNGG 1 cut(s) 894
BseGI GGATG 4 cut(s) 415, 593, 644, 889
BseLI CCNNNNNNNGG 1 cut(s) 895
BseMI GCAATG 4 cut(s) 398, 425, 497, 821
BseXI GCAGC 4 cut(s) 362, 442, 566, 838
BshFI GGCC 1 cut(s) 866
BshNI GGYRCC 3 cut(s) 83, 898, 913
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 1 cut(s) 895
BsmFI GGGAC 1 cut(s) 525
BsmI GAATGC 3 cut(s) 360, 639, 693
BsnI GGCC 1 cut(s) 866
Bsp143I GATC 1 cut(s) 842
BspANI GGCC 1 cut(s) 866
BspLI GGNNCC 5 cut(s) 85, 136, 844, 900, 915
BspPI GGATC 2 cut(s) 837, 850
BspT107I GGYRCC 3 cut(s) 83, 898, 913
BspTI CTTAAG 1 cut(s) 908
BsrDI GCAATG 4 cut(s) 398, 425, 497, 821
BssECI CCNNGG 1 cut(s) 894
BssMI GATC 1 cut(s) 842
BssNI GRCGYC 1 cut(s) 84
BssSI CACGAG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 894
Bst2BI CACGAG 1 cut(s) 12
Bst6I CTCTTC 2 cut(s) 1004, 1009
BstACI GRCGYC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 908
BstDEI CTNAG 1 cut(s) 983
BstF5I GGATG 4 cut(s) 415, 593, 644, 889
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 845
BstMBI GATC 1 cut(s) 842
BstMWI GCNNNNNNNGC 2 cut(s) 554, 734
BstV1I GCAGC 4 cut(s) 362, 442, 566, 838
BstV2I GAAGAC 2 cut(s) 114, 126
BstX2I RGATCY 1 cut(s) 842
BstXI CCANNNNNNTGG 2 cut(s) 94, 131
BstYI RGATCY 1 cut(s) 842
BsuRI GGCC 1 cut(s) 866
BtsCI GGATG 4 cut(s) 415, 593, 644, 889
CfoI GCGC 1 cut(s) 86
DdeI CTNAG 1 cut(s) 983
DinI GGCGCC 1 cut(s) 85
DpnI GATC 1 cut(s) 844
DpnII GATC 1 cut(s) 842
DraI TTTAAA 2 cut(s) 165, 652
Eam1104I CTCTTC 2 cut(s) 1004, 1009
EarI CTCTTC 2 cut(s) 1004, 1009
Eco130I CCWWGG 1 cut(s) 894
Eco147I AGGCCT 1 cut(s) 866
EcoT14I CCWWGG 1 cut(s) 894
EcoT22I ATGCAT 6 cut(s) 362, 641, 670, 695, 730, 745
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 894
FaqI GGGAC 1 cut(s) 525
Fnu4HI GCNGC 4 cut(s) 351, 431, 555, 827
FokI GGATG 4 cut(s) 402, 580, 631, 876
Fsp4HI GCNGC 4 cut(s) 351, 431, 555, 827
FspBI CTAG 1 cut(s) 780
GlaI GCGC 1 cut(s) 85
GluI GCNGC 4 cut(s) 351, 431, 555, 827
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 1 cut(s) 866
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 84
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HphI GGTGA 7 cut(s) 206, 464, 513, 745, 795, 842, 971
Hpy166II GTNNAC 1 cut(s) 874
Hpy188I TCNGA 1 cut(s) 618
Hpy188III TCNNGA 2 cut(s) 533, 761
Hpy8I GTNNAC 1 cut(s) 874
HpyAV CCTTC 2 cut(s) 534, 828
HpyCH4IV ACGT 2 cut(s) 23, 1027
HpyF10VI GCNNNNNNNGC 2 cut(s) 554, 734
HpyF3I CTNAG 1 cut(s) 983
HpySE526I ACGT 2 cut(s) 23, 1027
Hsp92I GRCGYC 1 cut(s) 84
HspAI GCGC 1 cut(s) 84
KasI GGCGCC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 842
LpnPI CCDG 3 cut(s) 546, 637, 774
Lsp1109I GCAGC 4 cut(s) 362, 442, 566, 838
LweI GCATC 2 cut(s) 677, 752
MaeI CTAG 1 cut(s) 780
MaeII ACGT 2 cut(s) 23, 1027
MalI GATC 1 cut(s) 844
MboI GATC 1 cut(s) 842
MboII GAAGA 6 cut(s) 110, 119, 131, 663, 1021, 1026
MflI RGATCY 1 cut(s) 842
MluCI AATT 6 cut(s) 102, 114, 175, 386, 675, 1036
Mly113I GGCGCC 1 cut(s) 84
MmeI TCCRAC 3 cut(s) 75, 112, 1034
MnlI CCTC 4 cut(s) 786, 831, 987, 999
Mph1103I ATGCAT 6 cut(s) 362, 641, 670, 695, 730, 745
MseI TTAA 7 cut(s) 53, 164, 393, 651, 678, 909, 936
MslI CAYNNNNRTG 1 cut(s) 477
MspCI CTTAAG 1 cut(s) 908
Mva1269I GAATGC 3 cut(s) 360, 639, 693
MwoI GCNNNNNNNGC 2 cut(s) 554, 734
NarI GGCGCC 1 cut(s) 84
NdeII GATC 1 cut(s) 842
NlaIV GGNNCC 5 cut(s) 85, 136, 844, 900, 915
NsiI ATGCAT 6 cut(s) 362, 641, 670, 695, 730, 745
PceI AGGCCT 1 cut(s) 866
PctI GAATGC 3 cut(s) 360, 639, 693
PflMI CCANNNNNTGG 1 cut(s) 895
PkrI GCNGC 4 cut(s) 352, 432, 556, 828
PluTI GGCGCC 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 936
Psp1406I AACGTT 1 cut(s) 1027
PspN4I GGNNCC 5 cut(s) 85, 136, 844, 900, 915
PsuI RGATCY 1 cut(s) 842
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 7 cut(s) 53, 164, 393, 651, 678, 909, 936
SatI GCNGC 4 cut(s) 351, 431, 555, 827
Sau3AI GATC 1 cut(s) 842
SfaNI GCATC 2 cut(s) 677, 752
SfoI GGCGCC 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 908
SmoI CTYRAG 1 cut(s) 908
Sse9I AATT 6 cut(s) 102, 114, 175, 386, 675, 1036
SseBI AGGCCT 1 cut(s) 866
SspDI GGCGCC 1 cut(s) 83
SspMI CTAG 1 cut(s) 780
StuI AGGCCT 1 cut(s) 866
StyI CCWWGG 1 cut(s) 894
TaiI ACGT 2 cut(s) 26, 1030
TasI AATT 6 cut(s) 102, 114, 175, 386, 675, 1036
Tru1I TTAA 7 cut(s) 53, 164, 393, 651, 678, 909, 936
Tru9I TTAA 7 cut(s) 53, 164, 393, 651, 678, 909, 936
TseI GCWGC 4 cut(s) 350, 430, 554, 826
TspDTI ATGAA 9 cut(s) 379, 441, 483, 516, 555, 575, 686, 810, 1020
Van91I CCANNNNNTGG 1 cut(s) 895
Vha464I CTTAAG 1 cut(s) 908
VspI ATTAAT 1 cut(s) 936
XspI CTAG 1 cut(s) 780
Zsp2I ATGCAT 6 cut(s) 362, 641, 670, 695, 730, 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.