pycom09g15620

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
15641388 .. 15641915
528 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15620.1

Sequence Viewer

Length: 528 bp
ATGCAAAATGATGCCTTTTGGAGCCTTTTGGAGCAAATTAGAGATTGGAATGGATATCATATGCTTGGAGCCAAGAGGATGGACGAAATTGAAGGATTCCTACTCCATTGCAGCCACATGCACATTCAATCATTCACACCAAAACCTTGCACATGCTTTCCCATTTCATTATTCATTCACCTTGCAGCCACTCCACATGCATTTCCAACTTTTCCTTTGCATTCCCCCTTTAATCATTCAAACATGCAGCCACACCTTCACCCACATGCACCATTCAAACATACACCCAAACACCACCATAAATCATCATTGCCGTGGGTACCTATCCCATTTCAGATTGTCATTCCACTTCATTGCACATGCATCTTCATAATTCAACACATGCATTCATTATTTATTTACTTTGCATCCTTTAATTTAATCACATGCACATTCAAACAAACACAATCATTCCAGCCATACCTTGCATTTTCAGATTGTTCCTCCATCATTGCACCACAATGCAGCCACATGCACTTGTTCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.37

Weight (kDa)

7.76

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 319
AfaI GTAC 1 cut(s) 321
AgsI TTSAA 6 cut(s) 92, 128, 240, 277, 377, 436
ApeKI GCWGC 4 cut(s) 111, 185, 247, 504
Asp718I GGTACC 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 170, 251
BanI GGYRCC 1 cut(s) 319
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
BbvI GCAGC 4 cut(s) 123, 197, 259, 516
BccI CCATC 2 cut(s) 73, 494
BceAI ACGGC 1 cut(s) 298
BisI GCNGC 4 cut(s) 112, 186, 248, 505
BlsI GCNGC 4 cut(s) 113, 187, 249, 506
BmiI GGNNCC 3 cut(s) 23, 70, 321
BmsI GCATC 2 cut(s) 372, 416
BsaJI CCNNGG 1 cut(s) 314
Bse3DI GCAATG 4 cut(s) 106, 308, 352, 489
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 2 cut(s) 84, 407
BseMI GCAATG 4 cut(s) 106, 308, 352, 489
BseXI GCAGC 4 cut(s) 123, 197, 259, 516
BshNI GGYRCC 1 cut(s) 319
BsmI GAATGC 2 cut(s) 220, 385
BspLI GGNNCC 3 cut(s) 23, 70, 321
BspT107I GGYRCC 1 cut(s) 319
BsrDI GCAATG 4 cut(s) 106, 308, 352, 489
BssECI CCNNGG 1 cut(s) 314
BstDSI CCRYGG 1 cut(s) 314
BstF5I GGATG 2 cut(s) 84, 407
BstNSI RCATGY 9 cut(s) 121, 156, 200, 247, 269, 363, 385, 429, 514
BstV1I GCAGC 4 cut(s) 123, 197, 259, 516
BstXI CCANNNNNNTGG 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 314
BtsCI GGATG 2 cut(s) 84, 407
Csp6I GTAC 1 cut(s) 320
CviAII CATG 9 cut(s) 118, 153, 197, 244, 266, 360, 382, 426, 511
CviJI RGCY 7 cut(s) 24, 71, 114, 188, 250, 457, 507
CviKI_1 RGCY 7 cut(s) 24, 71, 114, 188, 250, 457, 507
CviQI GTAC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 56
EcoRV GATATC 1 cut(s) 56
EcoT22I ATGCAT 3 cut(s) 202, 365, 387
FaeI CATG 9 cut(s) 121, 156, 200, 247, 269, 363, 385, 429, 514
FatI CATG 9 cut(s) 117, 152, 196, 243, 265, 359, 381, 425, 510
FauNDI CATATG 1 cut(s) 60
Fnu4HI GCNGC 4 cut(s) 112, 186, 248, 505
FokI GGATG 2 cut(s) 91, 394
Fsp4HI GCNGC 4 cut(s) 112, 186, 248, 505
GluI GCNGC 4 cut(s) 112, 186, 248, 505
Hin1II CATG 9 cut(s) 121, 156, 200, 247, 269, 363, 385, 429, 514
HinfI GANTC 1 cut(s) 96
HphI GGTGA 2 cut(s) 170, 251
Hpy188I TCNGA 2 cut(s) 336, 475
HpyAV CCTTC 2 cut(s) 86, 266
Hsp92II CATG 9 cut(s) 121, 156, 200, 247, 269, 363, 385, 429, 514
KpnI GGTACC 1 cut(s) 323
LmnI GCTCC 3 cut(s) 21, 31, 68
LpnPI CCDG 1 cut(s) 467
Lsp1109I GCAGC 4 cut(s) 123, 197, 259, 516
LweI GCATC 2 cut(s) 372, 416
MboII GAAGA 1 cut(s) 358
MluCI AATT 4 cut(s) 36, 87, 372, 415
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 2 cut(s) 69, 493
Mph1103I ATGCAT 3 cut(s) 202, 365, 387
MseI TTAA 3 cut(s) 231, 414, 419
MslI CAYNNNNRTG 3 cut(s) 264, 313, 499
Mva1269I GAATGC 2 cut(s) 220, 385
NdeI CATATG 1 cut(s) 60
NlaIII CATG 9 cut(s) 121, 156, 200, 247, 269, 363, 385, 429, 514
NlaIV GGNNCC 3 cut(s) 23, 70, 321
NsiI ATGCAT 3 cut(s) 202, 365, 387
NspI RCATGY 9 cut(s) 121, 156, 200, 247, 269, 363, 385, 429, 514
PctI GAATGC 2 cut(s) 220, 385
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 4 cut(s) 113, 187, 249, 506
PspN4I GGNNCC 3 cut(s) 23, 70, 321
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
RseI CAYNNNNRTG 3 cut(s) 264, 313, 499
SaqAI TTAA 3 cut(s) 231, 414, 419
SatI GCNGC 4 cut(s) 112, 186, 248, 505
SetI ASST 5 cut(s) 148, 183, 258, 325, 465
SfaNI GCATC 2 cut(s) 372, 416
SmiMI CAYNNNNRTG 3 cut(s) 264, 313, 499
Sse9I AATT 4 cut(s) 36, 87, 372, 415
TasI AATT 4 cut(s) 36, 87, 372, 415
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 3 cut(s) 231, 414, 419
Tru9I TTAA 3 cut(s) 231, 414, 419
TseI GCWGC 4 cut(s) 111, 185, 247, 504
TspDTI ATGAA 5 cut(s) 156, 163, 341, 358, 378
XceI RCATGY 9 cut(s) 121, 156, 200, 247, 269, 363, 385, 429, 514
Zsp2I ATGCAT 3 cut(s) 202, 365, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.