Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000749

Physical Location & Seq

Genomic Coordinates Reverse (-)

408067 .. 413016

Gene Structure 4950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGTCAACAACTTGGGTGTTTCAAGAGCACTGGTTGAAAATTCCAGAACCTTACTACTGCCTGCACATTTGCATGAGAGGTTAGGGTTAATCAAAAATGCAAAAGTTAGATTCGAAGACAAACGAATAACTCCATCTATTGATAGGATTGCAGAAAGCCTGAATATGTCCAAAAAGAAAGTTAGGAAGTTACTCAGAACAAATCACAGCGTCAAGCACAAACCACACTTGCATCATGATAAATCCACGCATTCCACAGGCGCAATAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010109 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0051775 GO:0060255 GO:0065007 GO:0071214 GO:0071461 GO:0071478 GO:0071482 GO:0071704 GO:0080005 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

90

Amino Acids

10.25

Weight (kDa)

11.05

Isoelectric Point (pI)

25.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sigma70_r3	PF04539	26 - 68	3.3e-06	Sigma-70 region 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13930 AT1G13930 AT1G13930 AT2G03440
fragaria_vesca	FvH4_4g30460
malus_domestica	MD13G1065600.v1.1 MD13G1065700.v1.1 MD16G1064100.v1.1 MD16G1064200.v1.1
prunus_persica	Prupe.1G282500_v2.0.a1
pyrus_communis	pycom13g05780 pycom13g05790
rosa_chinensis	RchiOBHm_Chr1g0320671 RchiOBHm_Chr2g0084691 RchiOBHm_Chr4g0391511 RchiOBHm_Chr4g0397231 RchiOBHm_Chr5g0038511 RchiOBHm_Chr7g0218611 RchiOBHm_Chr7g0243091
rosa_laevigata	RLG00000001214 RLG00000003134 RLG00000005591 RLG00000006330 RLG00000008137 RLG00000020620 RLG00000024858 RLG00000027359
rosa_multiflora	Rmu_co8437595.1_g000001 Rmu_sc0001781.1_g000012 Rmu_sc0001796.1_g000001 Rmu_sc0002245.1_g000048 Rmu_sc0002312.1_g000067 Rmu_sc0006553.1_g000012 Rmu_sc0007391.1_g000013 Rmu_ssc0000436.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072700 Rroxscaffold_3G00245360 Rroxscaffold_3G00267980 Rroxscaffold_4G00319730 Rroxscaffold_5G00374780 Rroxscaffold_7G00197900
rosa_rugosa	Rorug01G0161500.1 Rorug04G0313200 Rorug04G0313200 Rorug07G0153800
rosa_samantha	Rh1BG233900 Rh1DG068600 Rh1DG091400 Rh1DG261300 Rh2AG113800 Rh2AG464700 Rh4AG364000 Rh4BG288300 Rh4BG375300 Rh4CG180100 Rh4CG389400 Rh4DG224500 Rh4DG369700 Rh5AG078000 Rh5CG365500 Rh5DG489000 Rh5DG546500 Rh6BG092900 Rh7BG230100 Rh7BG332300 Rh7DG399200
rosa_wichuraiana	Rw0G007230 Rw0G016780 Rw2G045830 Rw4G006320 Rw5G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	24, 38
Alw21I	GWGCWC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	31
BccI	CCATC	1 cut(s)	142
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	250
Bsp119I	TTCGAA	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	235
BspT104I	TTCGAA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	63
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	1 cut(s)	263
CseI	GACGC	1 cut(s)	199
CviAII	CATG	2 cut(s)	74, 236
CviJI	RGCY	1 cut(s)	159
CviKI_1	RGCY	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	194
FaeI	CATG	2 cut(s)	77, 239
FaiI	YATR	4 cut(s)	75, 167, 237, 271
FatI	CATG	2 cut(s)	73, 235
GlaI	GCGC	1 cut(s)	262
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	2 cut(s)	77, 239
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	3 cut(s)	24, 45, 236
Hpy8I	GTNNAC	1 cut(s)	7
HpyCH4V	TGCA	5 cut(s)	65, 73, 101, 152, 232
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	77, 239
HspAI	GCGC	1 cut(s)	261
LpnPI	CCDG	5 cut(s)	17, 58, 75, 173, 243
LweI	GCATC	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	40
MnlI	CCTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	77, 239
NspV	TTCGAA	1 cut(s)	114
PagI	TCATGA	1 cut(s)	235
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	2 cut(s)	53, 83
SfaNI	GCATC	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	36
TspRI	CASTG	1 cut(s)	36
XapI	RAATTY	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.