RchiOBHm_Chr4g0407841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000981
Physical Location & Seq
Forward (+)
30136523 .. 30137145
623 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37906

Sequence Viewer

Length: 345 bp
ATGATGGCCATCTTGGCCGTGATGACGCGGGACTTCCTGCCTTCCATCTTGTTAGTGACAATCAGAGCAGGGGCTTTCGATGACTGGTTTGCCTCTCTTGTCATTGGTGACAGAGGTTGGGCAACTAGTTTGCTCGAGGCCAACTCTAACAAGCGGCGACGGTGCAGTTTTGTAGGTTTGGGATTCAGGTGTTTCCCTACCGGCAAAGGTGGTGGTGGATCCATGGCGGCGGCTTTCTATGGTAGTGGCTCCCTTCTAGGCCCTGGTTGGGCGGATTGGACCTGGTATTGGGCTACTTACTCAATCTGGGTTACAAGATCAGTTTGGGTTGTATGGACTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.6

Weight (kDa)

9.58

Isoelectric Point (pI)

29.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 28
AciI CCGC 5 cut(s) 28, 154, 227, 230, 272
AclWI GGATC 2 cut(s) 213, 226
AcoI YGGCCR 2 cut(s) 6, 15
AfiI CCNNNNNNNGG 2 cut(s) 268, 288
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 2 cut(s) 262, 281
AlwI GGATC 2 cut(s) 213, 226
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 4 cut(s) 6, 15, 138, 259
AspS9I GGNCC 2 cut(s) 260, 279
AsuHPI GGTGA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 279
BalI TGGCCA 1 cut(s) 8
BamHI GGATCC 1 cut(s) 218
BccI CCATC 2 cut(s) 17, 53
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 2 cut(s) 264, 283
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 2 cut(s) 126, 257
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 3 cut(s) 155, 228, 231
BlsI GCNGC 3 cut(s) 156, 229, 232
Bme1390I CCNGG 2 cut(s) 264, 283
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 2 cut(s) 260, 279
BmiI GGNNCC 2 cut(s) 220, 250
BmrFI CCNGG 2 cut(s) 264, 283
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 222, 262
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 288
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 264, 283
BseDI CCNNGG 2 cut(s) 222, 262
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 268, 288
BseNI ACTGG 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 28
BshFI GGCC 4 cut(s) 8, 17, 140, 261
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 268, 288
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 4 cut(s) 8, 17, 140, 261
BsoBI CYCGRG 1 cut(s) 134
Bsp143I GATC 2 cut(s) 218, 317
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 5 cut(s) 28, 154, 227, 230, 272
BspANI GGCC 4 cut(s) 8, 17, 140, 261
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 220, 250
BspPI GGATC 2 cut(s) 213, 226
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 222, 262
BssMI GATC 2 cut(s) 218, 317
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 264, 283
Bst4CI ACNGT 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 28
BstKTI GATC 2 cut(s) 221, 320
BstMBI GATC 2 cut(s) 218, 317
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 2 cut(s) 264, 283
BstSCI CCNGG 2 cut(s) 262, 281
BstUI CGCG 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 4 cut(s) 8, 17, 140, 261
BtgI CCRYGG 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 260, 279
CseI GACGC 1 cut(s) 34
CsiI ACCWGGT 1 cut(s) 281
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 1 cut(s) 223
CviJI RGCY 8 cut(s) 8, 17, 74, 140, 233, 249, 261, 293
CviKI_1 RGCY 8 cut(s) 8, 17, 74, 140, 233, 249, 261, 293
DpnI GATC 2 cut(s) 220, 319
DpnII GATC 2 cut(s) 218, 317
EaeI YGGCCR 2 cut(s) 6, 15
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 262, 281
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 226
FaiI YATR 4 cut(s) 224, 240, 334, 343
FaqI GGGAC 1 cut(s) 44
FatI CATG 1 cut(s) 222
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 155, 228, 231
Fsp4HI GCNGC 3 cut(s) 155, 228, 231
FspBI CTAG 2 cut(s) 126, 257
GluI GCNGC 3 cut(s) 155, 228, 231
HaeIII GGCC 4 cut(s) 8, 17, 140, 261
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 34
Hin1II CATG 1 cut(s) 226
HinfI GANTC 1 cut(s) 183
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 65
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 51, 263
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Hsp92II CATG 1 cut(s) 226
Kzo9I GATC 2 cut(s) 218, 317
LmnI GCTCC 1 cut(s) 254
MabI ACCWGGT 1 cut(s) 281
MaeI CTAG 2 cut(s) 126, 257
MaeIII GTNAC 3 cut(s) 55, 107, 310
MalI GATC 2 cut(s) 220, 319
MboI GATC 2 cut(s) 218, 317
MflI RGATCY 1 cut(s) 218
MlsI TGGCCA 1 cut(s) 8
MluNI TGGCCA 1 cut(s) 8
MnlI CCTC 3 cut(s) 103, 107, 130
Mox20I TGGCCA 1 cut(s) 8
MscI TGGCCA 1 cut(s) 8
Msp20I TGGCCA 1 cut(s) 8
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 264, 283
MvaI CCWGG 2 cut(s) 264, 283
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 14
NcoI CCATGG 1 cut(s) 222
NdeII GATC 2 cut(s) 218, 317
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 2 cut(s) 220, 250
NmuCI GTSAC 2 cut(s) 55, 107
PaeR7I CTCGAG 1 cut(s) 134
PfeI GAWTC 1 cut(s) 183
PkrI GCNGC 3 cut(s) 156, 229, 232
Psp6I CCWGG 2 cut(s) 262, 281
PspGI CCWGG 2 cut(s) 262, 281
PspN4I GGNNCC 2 cut(s) 220, 250
PspPI GGNCC 2 cut(s) 260, 279
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 1 cut(s) 218
SatI GCNGC 3 cut(s) 155, 228, 231
Sau3AI GATC 2 cut(s) 218, 317
Sau96I GGNCC 2 cut(s) 260, 279
ScrFI CCNGG 2 cut(s) 264, 283
SetI ASST 5 cut(s) 118, 178, 191, 211, 284
SexAI ACCWGGT 1 cut(s) 281
SfiI GGCCNNNNNGGCC 1 cut(s) 14
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 1 cut(s) 279
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SpeI ACTAGT 1 cut(s) 125
SsiI CCGC 5 cut(s) 28, 154, 227, 230, 272
SspMI CTAG 2 cut(s) 126, 257
StyD4I CCNGG 2 cut(s) 262, 281
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 78, 135
TauI GCSGC 3 cut(s) 157, 230, 233
TfiI GAWTC 1 cut(s) 183
TseFI GTSAC 2 cut(s) 55, 107
Tsp45I GTSAC 2 cut(s) 55, 107
VpaK11BI GGWCC 1 cut(s) 279
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 2 cut(s) 126, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.