RLG00000001832

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000981
Physical Location & Seq
Reverse (-)
21430130 .. 21431531
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001832

Sequence Viewer

Length: 693 bp
ATGACGCTCTCTCTTTCTCTCTCAAGAGTAACCCTAAGGCCGTCATCGATCTTGCTTGATGACAGTGCTGCAAACTTTTTGACTCTCAACAGAGAGGTTTCCCGGCCACGTAGTGACTCGGGCTCTTGGAATTGGAAGGGGGGCAGCGCTTCTCTTTCTACTTCTCTCCTCGGCGGCGATAGCGATTGGTTTCGCCGATGTTCCTTGAATTCATGTTTGGATCGGCTTCGTCTTCTTGGCAGACCGAAGCCTCAGATGGTTGCCATCTTGGCCGCGTTGCAGCAAGTTTCCTCGCCTCCATTGCCCGGTGGAGTAGGGACGTTCGGTGCTGGATCTGTCTTGCCGTGGGTGACAAAGAATTGGAAGCTGCTTAGCGCAAGGCTGGATTCGATACCGAGCTTGGTTTCTACCGGCAGTGGCGGAGACGGATTAGTGCAGGCAGCTAACTATGGTGGTGCCAGTGCCGGAATGCACACAGGTTGCCCAACAATTATGGCAACACTGAGGTGGAAATTTTCTTCTCCTCTAGGGTTTGCTCTCGTTGGGTTGGTTGGGCCTTGCATTGGGCTGCCTATTCATTGTGGGCCTTGGATTGGAGGATCTGTTTGCGCTGCATGGGCTTCCTTCTGGGCTAAGGTGGATTGGAGGAATAACTGGAAAATAAAGAATACATGCAAGAAGCCTCGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

24.45

Weight (kDa)

10.13

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AccII CGCG 1 cut(s) 275
AciI CCGC 3 cut(s) 174, 273, 420
AclWI GGATC 3 cut(s) 228, 340, 607
AcoI YGGCCR 2 cut(s) 104, 270
AcsI RAATTY 2 cut(s) 208, 512
AdeI CACNNNGTG 1 cut(s) 113
AfeI AGCGCT 1 cut(s) 148
AfiI CCNNNNNNNGG 3 cut(s) 305, 563, 593
AgsI TTSAA 1 cut(s) 208
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AleI CACNNNNGTG 1 cut(s) 505
AluBI AGCT 3 cut(s) 367, 399, 443
AluI AGCT 3 cut(s) 367, 399, 443
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 3 cut(s) 228, 340, 607
Ama87I CYCGRG 1 cut(s) 118
Aor51HI AGCGCT 1 cut(s) 148
AoxI GGCC 5 cut(s) 38, 104, 270, 554, 584
ApeKI GCWGC 7 cut(s) 68, 144, 280, 367, 440, 568, 611
ApoI RAATTY 2 cut(s) 208, 512
AspLEI GCGC 3 cut(s) 149, 377, 611
AspS9I GGNCC 2 cut(s) 554, 584
AsuC2I CCSGG 2 cut(s) 103, 306
AsuHPI GGTGA 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 35
BanI GGYRCC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 224
BbvI GCAGC 7 cut(s) 55, 156, 292, 354, 452, 555, 598
BccI CCATC 2 cut(s) 250, 272
BceAI ACGGC 2 cut(s) 25, 328
BcnI CCSGG 2 cut(s) 103, 306
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 1 cut(s) 527
BfoI RGCGCY 1 cut(s) 150
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 9 cut(s) 69, 145, 175, 273, 281, 368, 441, 569, 612
BlpI GCTNAGC 1 cut(s) 371
BlsI GCNGC 9 cut(s) 70, 146, 176, 274, 282, 369, 442, 570, 613
Bme1390I CCNGG 2 cut(s) 103, 306
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 554, 584
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 2 cut(s) 103, 306
BpiI GAAGAC 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 633
Bpu1102I GCTNAGC 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 7
BpuMI CCSGG 2 cut(s) 103, 306
Bsa29I ATCGAT 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 110
BsaJI CCNNGG 4 cut(s) 169, 344, 587, 683
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 563, 593
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 459, 659
Bse21I CCTNAGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 299
BseCI ATCGAT 1 cut(s) 47
BseDI CCNNGG 4 cut(s) 169, 344, 587, 683
BseLI CCNNNNNNNGG 3 cut(s) 305, 563, 593
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 2 cut(s) 266, 494
BseNI ACTGG 2 cut(s) 459, 659
BseRI GAGGAG 2 cut(s) 158, 513
BseXI GCAGC 7 cut(s) 55, 156, 292, 354, 452, 555, 598
BsgI GTGCAG 1 cut(s) 455
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 5 cut(s) 40, 106, 272, 556, 586
BshNI GGYRCC 1 cut(s) 455
BshVI ATCGAT 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 4 cut(s) 103, 306, 411, 465
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 3 cut(s) 305, 563, 593
BsmAI GTCTC 1 cut(s) 417
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 331
BsmI GAATGC 1 cut(s) 474
BsnI GGCC 5 cut(s) 40, 106, 272, 556, 586
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 48, 220, 332, 599
Bsp1720I GCTNAGC 1 cut(s) 371
BspACI CCGC 3 cut(s) 174, 273, 420
BspANI GGCC 5 cut(s) 40, 106, 272, 556, 586
BspCNI CTCAG 2 cut(s) 265, 495
BspDI ATCGAT 1 cut(s) 47
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 457
BspPI GGATC 3 cut(s) 228, 340, 607
BspT107I GGYRCC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 2 cut(s) 459, 659
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 4 cut(s) 169, 344, 587, 683
BssMI GATC 4 cut(s) 48, 220, 332, 599
BssT1I CCWWGG 1 cut(s) 587
Bst4CI ACNGT 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 5 cut(s) 35, 252, 371, 503, 633
BstDSI CCRYGG 1 cut(s) 344
BstFNI CGCG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 3 cut(s) 149, 377, 611
BstKTI GATC 4 cut(s) 51, 223, 335, 602
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 4 cut(s) 48, 220, 332, 599
BstMWI GCNNNNNNNGC 4 cut(s) 180, 269, 301, 617
BstNSI RCATGY 1 cut(s) 675
BstSCI CCNGG 2 cut(s) 101, 304
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 7 cut(s) 55, 156, 292, 354, 452, 555, 598
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 332, 599
BstYI RGATCY 2 cut(s) 332, 599
Bsu15I ATCGAT 1 cut(s) 47
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 5 cut(s) 40, 106, 272, 556, 586
BsuTUI ATCGAT 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 344
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 4 cut(s) 70, 421, 466, 500
Cac8I GCNNGC 1 cut(s) 438
CfoI GCGC 3 cut(s) 149, 377, 611
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 2 cut(s) 554, 584
ClaI ATCGAT 1 cut(s) 47
CseI GACGC 1 cut(s) 13
CviAII CATG 3 cut(s) 213, 615, 672
DdeI CTNAG 5 cut(s) 35, 252, 371, 503, 633
DpnI GATC 4 cut(s) 50, 222, 334, 601
DpnII GATC 4 cut(s) 48, 220, 332, 599
DraIII CACNNNGTG 1 cut(s) 113
EaeI YGGCCR 2 cut(s) 104, 270
EciI GGCGGA 1 cut(s) 435
Eco130I CCWWGG 1 cut(s) 587
Eco24I GRGCYC 1 cut(s) 125
Eco47III AGCGCT 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 35
Eco88I CYCGRG 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 587
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 587
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 3 cut(s) 216, 618, 675
FaiI YATR 6 cut(s) 214, 450, 494, 616, 673, 691
FaqI GGGAC 1 cut(s) 331
FatI CATG 3 cut(s) 212, 614, 671
Fnu4HI GCNGC 9 cut(s) 69, 145, 175, 273, 281, 368, 441, 569, 612
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 9 cut(s) 69, 145, 175, 273, 281, 368, 441, 569, 612
FspBI CTAG 1 cut(s) 527
GlaI GCGC 3 cut(s) 148, 376, 610
GluI GCNGC 9 cut(s) 69, 145, 175, 273, 281, 368, 441, 569, 612
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 5 cut(s) 40, 106, 272, 556, 586
HapII CCGG 4 cut(s) 103, 306, 411, 465
HgaI GACGC 1 cut(s) 13
HhaI GCGC 3 cut(s) 149, 377, 611
Hin1II CATG 3 cut(s) 216, 618, 675
Hin6I GCGC 3 cut(s) 147, 375, 609
HinP1I GCGC 3 cut(s) 147, 375, 609
HinfI GANTC 3 cut(s) 82, 116, 386
HpaII CCGG 4 cut(s) 103, 306, 411, 465
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 255, 687
Hpy188III TCNNGA 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 130, 634
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 2 cut(s) 109, 320
HpyCH4V TGCA 7 cut(s) 71, 280, 436, 472, 561, 614, 675
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 269, 301, 617
HpyF3I CTNAG 5 cut(s) 35, 252, 371, 503, 633
HpySE526I ACGT 2 cut(s) 109, 320
Hsp92II CATG 3 cut(s) 216, 618, 675
HspAI GCGC 3 cut(s) 147, 375, 609
Kzo9I GATC 4 cut(s) 48, 220, 332, 599
Lsp1109I GCAGC 7 cut(s) 55, 156, 292, 354, 452, 555, 598
MaeI CTAG 1 cut(s) 527
MaeII ACGT 2 cut(s) 109, 320
MaeIII GTNAC 3 cut(s) 28, 113, 349
MalI GATC 4 cut(s) 50, 222, 334, 601
MboI GATC 4 cut(s) 48, 220, 332, 599
MboII GAAGA 2 cut(s) 224, 510
MflI RGATCY 2 cut(s) 332, 599
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 5 cut(s) 130, 208, 358, 489, 512
MlyI GAGTC 2 cut(s) 76, 110
MslI CAYNNNNRTG 1 cut(s) 505
MspI CCGG 4 cut(s) 103, 306, 411, 465
MspR9I CCNGG 2 cut(s) 103, 306
Mva1269I GAATGC 1 cut(s) 474
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 4 cut(s) 180, 269, 301, 617
NciI CCSGG 2 cut(s) 103, 306
NdeII GATC 4 cut(s) 48, 220, 332, 599
NlaIII CATG 3 cut(s) 216, 618, 675
NlaIV GGNNCC 1 cut(s) 457
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 2 cut(s) 113, 349
NspI RCATGY 1 cut(s) 675
OliI CACNNNNGTG 1 cut(s) 505
PctI GAATGC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 9 cut(s) 70, 146, 176, 274, 282, 369, 442, 570, 613
PleI GAGTC 2 cut(s) 76, 110
PpsI GAGTC 2 cut(s) 76, 110
Ppu21I YACGTR 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 2 cut(s) 554, 584
PsuI RGATCY 2 cut(s) 332, 599
RseI CAYNNNNRTG 1 cut(s) 505
SatI GCNGC 9 cut(s) 69, 145, 175, 273, 281, 368, 441, 569, 612
Sau3AI GATC 4 cut(s) 48, 220, 332, 599
Sau96I GGNCC 2 cut(s) 554, 584
SchI GAGTC 2 cut(s) 76, 110
ScrFI CCNGG 2 cut(s) 103, 306
SduI GDGCHC 1 cut(s) 125
SetI ASST 9 cut(s) 99, 112, 323, 369, 401, 445, 481, 509, 639
SmiMI CAYNNNNRTG 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 5 cut(s) 130, 208, 358, 489, 512
SsiI CCGC 3 cut(s) 174, 273, 420
SspMI CTAG 1 cut(s) 527
StyD4I CCNGG 2 cut(s) 101, 304
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 2 cut(s) 112, 323
TaqI TCGA 2 cut(s) 47, 389
TaqII GACCGA 1 cut(s) 259
TasI AATT 5 cut(s) 130, 208, 358, 489, 512
TauI GCSGC 2 cut(s) 177, 275
TfiI GAWTC 1 cut(s) 386
TscAI CASTG 4 cut(s) 70, 421, 466, 507
TseFI GTSAC 2 cut(s) 113, 349
TseI GCWGC 7 cut(s) 68, 144, 280, 367, 440, 568, 611
Tsp45I GTSAC 2 cut(s) 113, 349
TspDTI ATGAA 2 cut(s) 201, 566
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 4 cut(s) 70, 421, 466, 507
XapI RAATTY 2 cut(s) 208, 512
XceI RCATGY 1 cut(s) 675
XspI CTAG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.