RLG00000023069

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000981
Physical Location & Seq
Forward (+)
17659709 .. 17660358
650 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023069

Sequence Viewer

Length: 555 bp
ATGAAGCTCTCTCTTCTCTCAAGAGCAACCCTAAGGTTGCAACCAACCTTGATTAGTGGCGGCGGCGCTGCAAACTTTCTGAGTCTCGGCAGAGAGGCTTCCCACTTACGTAGTGGTTCTGAACCTTGGATTTGGAAGGGCGGTGACGCCTCTCTTTCTCCTCCTCTTCTTGGTGGCAACGTCGATTGGCTTCGACACCCCTTGAATTTATGTCTGGATCAGTTTTGTCTTCTTGATAGACCGGAGCCTCTAATGGCGATTCGATCAAATGGGATCGATCGGCTCTTATGGTGGTCGAGGATGACGATGTCAGTGGTGAATGGGTTTCCTCTTCCACTGGAAAGATTGTTGCCGGGTTACAATTGGACGATGACGGTGGTGATGGAGCTCTCTCTCCCATGCCAGAATTGTACGGTGGTGACGGGAAAGCTCGGTGGCGGTGACAAAGACTTCTATAATGGTGATGGGAATGGTTGCGACAGTAGTGGTGAAGGAGGTTTTGCTGAGGAGGGCGACTGTTTGGCTGTTAGGGAGGCTAAATTCCAATTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.04

Weight (kDa)

5.69

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 60, 63, 141, 438
AclWI GGATC 2 cut(s) 225, 281
AcsI RAATTY 2 cut(s) 205, 539
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 1 cut(s) 412
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 2 cut(s) 205, 550
AluBI AGCT 3 cut(s) 7, 388, 430
AluI AGCT 3 cut(s) 7, 388, 430
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 2 cut(s) 225, 281
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 205, 539
AspLEI GCGC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 7 cut(s) 155, 328, 391, 430, 452, 473, 500
AxyI CCTNAGG 1 cut(s) 32
BanII GRGCYC 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 55
BccI CCATC 2 cut(s) 376, 458
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 3 cut(s) 61, 64, 69
BlsI GCNGC 3 cut(s) 62, 65, 70
Bme1390I CCNGG 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 4
BpuMI CCSGG 1 cut(s) 354
Bsa29I ATCGAT 1 cut(s) 276
BsaAI YACGTR 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 342
Bse21I CCTNAGG 1 cut(s) 32
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 2 cut(s) 71, 495
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 3 cut(s) 150, 153, 521
BseXI GCAGC 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 280
BshVI ATCGAT 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 2 cut(s) 242, 353
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 4 cut(s) 217, 263, 273, 277
BspACI CCGC 4 cut(s) 60, 63, 141, 438
BspCNI CTCAG 2 cut(s) 72, 496
BspDI ATCGAT 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 2 cut(s) 225, 281
BsrI ACTGG 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 4 cut(s) 217, 263, 273, 277
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 125
Bst4CI ACNGT 4 cut(s) 376, 415, 482, 518
Bst6I CTCTTC 3 cut(s) 18, 171, 336
BstACI GRCGYC 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 110
BstDEI CTNAG 3 cut(s) 32, 80, 504
BstF5I GGATG 1 cut(s) 306
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 4 cut(s) 220, 266, 276, 280
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 4 cut(s) 217, 263, 273, 277
BstMCI CGRYCG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 352
BstSNI TACGTA 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 221
Bsu15I ATCGAT 1 cut(s) 276
Bsu36I CCTNAGG 1 cut(s) 32
BsuTUI ATCGAT 1 cut(s) 276
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 318, 335
CfoI GCGC 1 cut(s) 68
ClaI ATCGAT 1 cut(s) 276
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 411
CviAII CATG 1 cut(s) 399
CviJI RGCY 9 cut(s) 7, 98, 190, 247, 283, 388, 430, 524, 536
CviKI_1 RGCY 9 cut(s) 7, 98, 190, 247, 283, 388, 430, 524, 536
CviQI GTAC 1 cut(s) 411
DdeI CTNAG 3 cut(s) 32, 80, 504
DpnI GATC 4 cut(s) 219, 265, 275, 279
DpnII GATC 4 cut(s) 217, 263, 273, 277
Eam1104I CTCTTC 3 cut(s) 18, 171, 336
EarI CTCTTC 3 cut(s) 18, 171, 336
Ecl136II GAGCTC 1 cut(s) 388
Eco105I TACGTA 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 388
Eco81I CCTNAGG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 1 cut(s) 402
FaiI YATR 4 cut(s) 211, 289, 400, 456
FatI CATG 1 cut(s) 398
Fnu4HI GCNGC 3 cut(s) 61, 64, 69
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 3 cut(s) 61, 64, 69
GlaI GCGC 1 cut(s) 67
GluI GCNGC 3 cut(s) 61, 64, 69
HaeII RGCGCY 1 cut(s) 69
HapII CCGG 2 cut(s) 242, 353
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 1 cut(s) 402
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 2 cut(s) 82, 259
HpaII CCGG 2 cut(s) 242, 353
HphI GGTGA 7 cut(s) 155, 328, 391, 430, 452, 473, 500
Hpy188I TCNGA 2 cut(s) 81, 121
Hpy188III TCNNGA 3 cut(s) 21, 215, 233
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 2 cut(s) 130, 485
HpyCH4III ACNGT 4 cut(s) 376, 415, 482, 518
HpyCH4IV ACGT 2 cut(s) 109, 180
HpyCH4V TGCA 2 cut(s) 40, 71
HpyF3I CTNAG 3 cut(s) 32, 80, 504
HpySE526I ACGT 2 cut(s) 109, 180
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 1 cut(s) 402
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 4 cut(s) 217, 263, 273, 277
LmnI GCTCC 2 cut(s) 244, 385
LpnPI CCDG 5 cut(s) 200, 255, 323, 366, 416
Lsp1109I GCAGC 1 cut(s) 55
MaeII ACGT 2 cut(s) 109, 180
MaeIII GTNAC 4 cut(s) 143, 356, 418, 440
MalI GATC 4 cut(s) 219, 265, 275, 279
MboI GATC 4 cut(s) 217, 263, 273, 277
MboII GAAGA 4 cut(s) 5, 158, 221, 323
MfeI CAATTG 2 cut(s) 361, 545
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 5 cut(s) 205, 361, 406, 539, 545
MlyI GAGTC 1 cut(s) 91
MspI CCGG 2 cut(s) 242, 353
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 2 cut(s) 361, 545
NciI CCSGG 1 cut(s) 354
NdeII GATC 4 cut(s) 217, 263, 273, 277
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 1 cut(s) 246
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 3 cut(s) 143, 418, 440
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PfeI GAWTC 1 cut(s) 259
PflFI GACNNNGTC 1 cut(s) 307
PkrI GCNGC 3 cut(s) 62, 65, 70
Ple19I CGATCG 1 cut(s) 280
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 390
PspN4I GGNNCC 1 cut(s) 246
PsyI GACNNNGTC 1 cut(s) 307
PvuI CGATCG 1 cut(s) 280
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
SacI GAGCTC 1 cut(s) 390
SatI GCNGC 3 cut(s) 61, 64, 69
Sau3AI GATC 4 cut(s) 217, 263, 273, 277
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 390
SetI ASST 9 cut(s) 9, 38, 50, 112, 127, 183, 390, 432, 499
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
SnaBI TACGTA 1 cut(s) 110
Sse9I AATT 5 cut(s) 205, 361, 406, 539, 545
SsiI CCGC 4 cut(s) 60, 63, 141, 438
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 4 cut(s) 376, 415, 482, 518
TaiI ACGT 2 cut(s) 112, 183
TaqI TCGA 5 cut(s) 183, 193, 262, 276, 296
TasI AATT 5 cut(s) 205, 361, 406, 539, 545
TauI GCSGC 2 cut(s) 63, 66
TfiI GAWTC 1 cut(s) 259
TscAI CASTG 2 cut(s) 318, 342
TseFI GTSAC 3 cut(s) 143, 418, 440
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 3 cut(s) 143, 418, 440
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 318, 342
Tth111I GACNNNGTC 1 cut(s) 307
XapI RAATTY 2 cut(s) 205, 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.