Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000981

Physical Location & Seq

Genomic Coordinates Reverse (-)

66717333 .. 66729683

Gene Structure 12351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG472700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTAGCGCCAGCAGCAGCATCTGCTCACTGTTCCTCCCAGCCACATCGCTTTCAGAAGTCTGTCAGCGTCACCAAGCAGATCCAACAGGGCACTGGCGCAAAGATCCGAATCGAGGAGCCGCCTCAACTTTACTCACCGGACAAGGTCATCGCTCCCAGTCGCAATCCGGTCAAAACGATGACGGTGGGTTTGGTTGGGCAACAGAGGCAAGATAACGGTGGGTTTGCTCTAATTCGAAATTTCGCCGATGAATTTATTTTCAACAAGTATCAATCTTCGAAATTGCTTATAGTTTTTCAGACCTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

104

Amino Acids

11.49

Weight (kDa)

9.92

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0486651 RchiOBHm_Chr4g0407841 RchiOBHm_Chr6g0312071 RchiOBHm_Chr6g0312081 RchiOBHm_Chr7g0199951
rosa_laevigata	RLG00000000594 RLG00000001567 RLG00000001832 RLG00000004637 RLG00000004640 RLG00000004833 RLG00000006679 RLG00000007158 RLG00000008694 RLG00000009075 RLG00000011512 RLG00000012673 RLG00000015109 RLG00000016150 RLG00000017316 RLG00000019776 RLG00000020284 RLG00000020334 RLG00000021424 RLG00000021718 RLG00000022244 RLG00000023069 RLG00000023643 RLG00000025130 RLG00000027919 RLG00000028123 RLG00000029202 RLG00000030087 RLG00000035075 RLG00000035197 RLG00000035409 RLG00000035824
rosa_multiflora	Rmu_sc0002613.1_g000004 Rmu_ssc0000041.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019920 Rroxscaffold_2G00115510 Rroxscaffold_3G00246460 Rroxscaffold_3G00264120 Rroxscaffold_5G00344800 Rroxscaffold_6G00403360 Rroxscaffold_7G00204700
rosa_rugosa	Rorug02G0168200 Rorug05G0236500 Rorug05G0287700 Rorug05G0492800 Rorug06G0461500 Rorug06G0495600
rosa_samantha	Rh1CG201100 Rh1DG303400 Rh2BG472700 Rh3AG275800 Rh5BG139300 Rh5CG230200 Rh5DG114300 Rh6AG509200 Rh6BG248700 Rh6CG280300 Rh6DG402300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	76, 100
AcsI	RAATTY	2 cut(s)	241, 254
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	265
AlwI	GGATC	2 cut(s)	76, 100
AlwNI	CAGNNNCTG	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	14, 17
ApoI	RAATTY	2 cut(s)	241, 254
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
AspLEI	GCGC	2 cut(s)	10, 101
AsuHPI	GGTGA	2 cut(s)	64, 129
AsuII	TTCGAA	2 cut(s)	238, 281
BaeGI	GKGCMC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	26, 29
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	3 cut(s)	15, 18, 122
BlsI	GCNGC	3 cut(s)	16, 19, 123
BmiI	GGNNCC	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	153
Bpu14I	TTCGAA	2 cut(s)	238, 281
BsaBI	GATNNNNATC	1 cut(s)	110
BsaWI	WCCGGW	2 cut(s)	139, 169
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	100, 159
Bse8I	GATNNNNATC	1 cut(s)	110
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseNI	ACTGG	2 cut(s)	100, 159
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	26, 29
BseYI	CCCAGC	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	140, 170
BslI	CCNNNNNNNGG	1 cut(s)	115
Bsp119I	TTCGAA	2 cut(s)	238, 281
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	81, 105
BspACI	CCGC	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	76, 100
BspT104I	TTCGAA	2 cut(s)	238, 281
BsrI	ACTGG	2 cut(s)	100, 159
BssMI	GATC	2 cut(s)	81, 105
Bst4CI	ACNGT	3 cut(s)	32, 187, 221
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBI	TTCGAA	2 cut(s)	238, 281
BstC8I	GCNNGC	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 101
BstKTI	GATC	2 cut(s)	84, 108
BstMBI	GATC	2 cut(s)	81, 105
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 23, 208
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	26, 29
BstX2I	RGATCY	2 cut(s)	81, 105
BstYI	RGATCY	2 cut(s)	81, 105
BtgZI	GCGATG	2 cut(s)	32, 136
BtsIMutI	CAGTG	2 cut(s)	28, 93
Cac8I	GCNNGC	1 cut(s)	12
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	2 cut(s)	10, 101
CseI	GACGC	1 cut(s)	58
CviJI	RGCY	2 cut(s)	43, 121
CviKI_1	RGCY	2 cut(s)	43, 121
DpnI	GATC	2 cut(s)	83, 107
DpnII	GATC	2 cut(s)	81, 105
FaiI	YATR	1 cut(s)	293
Fnu4HI	GCNGC	3 cut(s)	15, 18, 122
Fsp4HI	GCNGC	3 cut(s)	15, 18, 122
GlaI	GCGC	2 cut(s)	9, 100
GluI	GCNGC	3 cut(s)	15, 18, 122
GsaI	CCCAGC	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	11
HapII	CCGG	2 cut(s)	140, 170
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	10, 101
Hin6I	GCGC	2 cut(s)	8, 99
HinP1I	GCGC	2 cut(s)	8, 99
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	2 cut(s)	140, 170
HphI	GGTGA	2 cut(s)	64, 129
Hpy188I	TCNGA	3 cut(s)	57, 110, 303
HpyCH4III	ACNGT	3 cut(s)	32, 187, 221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 23, 208
HspAI	GCGC	2 cut(s)	8, 99
Kzo9I	GATC	2 cut(s)	81, 105
LmnI	GCTCC	2 cut(s)	118, 160
LpnPI	CCDG	7 cut(s)	24, 53, 74, 81, 153, 172, 183
Lsp1109I	GCAGC	2 cut(s)	26, 29
LweI	GCATC	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	83, 107
MboI	GATC	2 cut(s)	81, 105
MboII	GAAGA	1 cut(s)	270
MflI	RGATCY	2 cut(s)	81, 105
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	4 cut(s)	234, 241, 254, 284
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	46, 109, 135, 201
MspI	CCGG	2 cut(s)	140, 170
MwoI	GCNNNNNNNGC	3 cut(s)	14, 23, 208
NdeII	GATC	2 cut(s)	81, 105
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	70
NspV	TTCGAA	2 cut(s)	238, 281
PfeI	GAWTC	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	16, 19, 123
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	2 cut(s)	81, 105
PsyI	GACNNNGTC	1 cut(s)	146
SatI	GCNGC	3 cut(s)	15, 18, 122
Sau3AI	GATC	2 cut(s)	81, 105
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	2 cut(s)	150, 308
SfaNI	GCATC	1 cut(s)	29
SfuI	TTCGAA	2 cut(s)	238, 281
Sse9I	AATT	4 cut(s)	234, 241, 254, 284
SsiI	CCGC	1 cut(s)	122
TaaI	ACNGT	3 cut(s)	32, 187, 221
TaqI	TCGA	3 cut(s)	114, 238, 281
TasI	AATT	4 cut(s)	234, 241, 254, 284
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	111
TscAI	CASTG	2 cut(s)	35, 100
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	14, 17
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	2 cut(s)	35, 100
Tth111I	GACNNNGTC	1 cut(s)	146
XapI	RAATTY	2 cut(s)	241, 254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.