Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000981

Physical Location & Seq

Genomic Coordinates Forward (+)

26429404 .. 26432325

Gene Structure 2922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCCACGGTTGAACAGGTACCTCCATTTTCAGTTCGAAAGGTGTTCACACAGATATTCTCCTTCATCAATGTTCAGTTATTCAACAGCCTTCTATTACGACGCGAGTGCTGTTCGTTTAGTAATGGGGAATATGTAAAAGCTGGTTTGGCTGAGTTGGAGCATTGGTGCTATGAAGCAACAGATAGGCAAATGCCAATTTCAGCTTTAGACCTCTGTGTCATTATCTATCTCGGCGCTGCAAACTCCTTGACTCTCGACAGAGAGGATTTTCGGCTACACAATGGCTCGGTAAATTGGATTTGGAAGGGTGGCAGAGCCTCTCTTTCTTCTTCCCTATTTGGCGACGATGACGAGTGGTGTCGACGGTATCGGGCTCGTCTTTTGGGTGGACCAAAACCTCTAATGGCGGTCAGCTTGGTTGCTAAGGCTCGAGTCTTCTCACCTTCAACTTTGGTGTTTGCGTTGGGCGATGTGAGATGGGGACTCGATGATGGCAGTGGTTCAGATCCGATCGGGGGTACCTTGGATTTTGTCTCTGTTTTGGTGGCCGTGATTGATACCCGTGGATGGGGTCTCACGCCTCCGGATGGGAGGCTAGGCGGCAGGATTCCGGGATTGAGCTTTCTGATCCTGCAGGATTCCGAGCTGGGAGGCAGGATTTCGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000146 GO:0000166 GO:0000331 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008144 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022414 GO:0030029 GO:0030036 GO:0030048 GO:0030154 GO:0030554 GO:0030898 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033275 GO:0035639 GO:0036094 GO:0040007 GO:0042623 GO:0042641 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051656 GO:0051704 GO:0060560 GO:0070252 GO:0071840 GO:0097159 GO:0097367 GO:0097435 GO:0097708 GO:0140027 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIL IQ Myosin_N Myosin_head

Protein Analysis

224

Amino Acids

24.43

Weight (kDa)

5.73

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIL	PF01843	14 - 62	4.1e-15	DIL domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0486651 RchiOBHm_Chr4g0407841 RchiOBHm_Chr6g0312071 RchiOBHm_Chr6g0312081 RchiOBHm_Chr7g0199951
rosa_laevigata	RLG00000000594 RLG00000001567 RLG00000001832 RLG00000004637 RLG00000004640 RLG00000004833 RLG00000006679 RLG00000007158 RLG00000008694 RLG00000009075 RLG00000011512 RLG00000012673 RLG00000015109 RLG00000016150 RLG00000017316 RLG00000019776 RLG00000020284 RLG00000020334 RLG00000021424 RLG00000021718 RLG00000022244 RLG00000023069 RLG00000023643 RLG00000025130 RLG00000027919 RLG00000028123 RLG00000029202 RLG00000030087 RLG00000035075 RLG00000035197 RLG00000035409 RLG00000035824
rosa_multiflora	Rmu_sc0002613.1_g000004 Rmu_ssc0000041.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019920 Rroxscaffold_2G00115510 Rroxscaffold_3G00246460 Rroxscaffold_3G00264120 Rroxscaffold_5G00344800 Rroxscaffold_6G00403360 Rroxscaffold_7G00204700
rosa_rugosa	Rorug02G0168200 Rorug05G0236500 Rorug05G0287700 Rorug05G0492800 Rorug06G0461500 Rorug06G0495600
rosa_samantha	Rh1CG201100 Rh1DG303400 Rh2BG472700 Rh3AG275800 Rh5BG139300 Rh5CG230200 Rh5DG114300 Rh6AG509200 Rh6BG248700 Rh6CG280300 Rh6DG402300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc65I	GGTACC	2 cut(s)	19, 521
AccB1I	GGYRCC	2 cut(s)	19, 521
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	586
AciI	CCGC	2 cut(s)	410, 603
AclWI	GGATC	2 cut(s)	503, 625
AcoI	YGGCCR	2 cut(s)	3, 549
AfaI	GTAC	2 cut(s)	21, 523
AfiI	CCNNNNNNNGG	4 cut(s)	518, 570, 571, 590
AgsI	TTSAA	3 cut(s)	14, 85, 450
AluBI	AGCT	5 cut(s)	143, 206, 417, 624, 649
AluI	AGCT	5 cut(s)	143, 206, 417, 624, 649
Alw26I	GTCTC	2 cut(s)	541, 581
AlwI	GGATC	2 cut(s)	503, 625
Ama87I	CYCGRG	1 cut(s)	432
Aor13HI	TCCGGA	1 cut(s)	586
AoxI	GGCC	2 cut(s)	3, 549
ApeKI	GCWGC	1 cut(s)	239
Asp718I	GGTACC	2 cut(s)	19, 521
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	1 cut(s)	435
AsuII	TTCGAA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	19, 521
BanII	GRGCYC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	4 cut(s)	474, 488, 564, 584
BceAI	ACGGC	1 cut(s)	536
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	2 cut(s)	541, 581
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	1 cut(s)	635
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	2 cut(s)	240, 604
BlsI	GCNGC	2 cut(s)	241, 605
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	21, 523
BmrFI	CCNGG	1 cut(s)	615
BpiI	GAAGAC	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	3 cut(s)	6, 525, 565
BsaWI	WCCGGW	1 cut(s)	586
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	4 cut(s)	518, 570, 571, 590
BseAI	TCCGGA	1 cut(s)	586
BseDI	CCNNGG	3 cut(s)	6, 525, 565
BseGI	GGATG	2 cut(s)	575, 595
BseLI	CCNNNNNNNGG	4 cut(s)	518, 570, 571, 590
BseMII	CTCAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	649
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	516
BshFI	GGCC	2 cut(s)	5, 551
BshNI	GGYRCC	2 cut(s)	19, 521
BsiEI	CGRYCG	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	587, 614
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	4 cut(s)	518, 570, 571, 590
BsmAI	GTCTC	2 cut(s)	541, 581
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	5, 551
Bso31I	GGTCTC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	432
Bsp119I	TTCGAA	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp13I	TCCGGA	1 cut(s)	586
Bsp143I	GATC	3 cut(s)	508, 513, 630
BspACI	CCGC	2 cut(s)	410, 603
BspANI	GGCC	2 cut(s)	5, 551
BspCNI	CTCAG	1 cut(s)	145
BspEI	TCCGGA	1 cut(s)	586
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	21, 523
BspMAI	CTGCAG	1 cut(s)	639
BspPI	GGATC	2 cut(s)	503, 625
BspT104I	TTCGAA	1 cut(s)	37
BspT107I	GGYRCC	2 cut(s)	19, 521
BspTNI	GGTCTC	1 cut(s)	581
BssECI	CCNNGG	3 cut(s)	6, 525, 565
BssMI	GATC	3 cut(s)	508, 513, 630
BssT1I	CCWWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	10, 369
BstBI	TTCGAA	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	153, 426
BstDSI	CCRYGG	2 cut(s)	6, 565
BstF5I	GGATG	2 cut(s)	575, 595
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	3 cut(s)	511, 516, 633
BstMAI	GTCTC	2 cut(s)	541, 581
BstMBI	GATC	3 cut(s)	508, 513, 630
BstMCI	CGRYCG	1 cut(s)	516
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	1 cut(s)	635
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	5, 551
BtgI	CCRYGG	2 cut(s)	6, 565
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	575, 595
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	505
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	392
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	20, 522
CviQI	GTAC	2 cut(s)	20, 522
DdeI	CTNAG	2 cut(s)	153, 426
DpnI	GATC	3 cut(s)	510, 515, 632
DpnII	GATC	3 cut(s)	508, 513, 630
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	3, 549
Eco130I	CCWWGG	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	525
FaiI	YATR	2 cut(s)	135, 174
FaqI	GGGAC	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	240, 604
FokI	GGATG	2 cut(s)	582, 602
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	2 cut(s)	240, 604
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	2 cut(s)	240, 604
GsaI	CCCAGC	1 cut(s)	653
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	5, 551
HapII	CCGG	2 cut(s)	587, 614
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	365
HindII	GTYRAC	1 cut(s)	365
HinfI	GANTC	5 cut(s)	253, 435, 486, 610, 641
HpaII	CCGG	2 cut(s)	587, 614
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	3 cut(s)	48, 365, 392
Hpy188I	TCNGA	4 cut(s)	508, 513, 630, 646
Hpy188III	TCNNGA	2 cut(s)	257, 587
Hpy8I	GTNNAC	3 cut(s)	48, 365, 392
Hpy99I	CGWCG	3 cut(s)	105, 350, 369
HpyAV	CCTTC	4 cut(s)	73, 101, 301, 456
HpyCH4III	ACNGT	2 cut(s)	10, 369
HpyCH4V	TGCA	2 cut(s)	242, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	153, 426
HspAI	GCGC	1 cut(s)	237
Kpn2I	TCCGGA	1 cut(s)	586
KpnI	GGTACC	2 cut(s)	23, 525
Kzo9I	GATC	3 cut(s)	508, 513, 630
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	9 cut(s)	2, 129, 592, 600, 623, 627, 635, 643, 647
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	599
MalI	GATC	3 cut(s)	510, 515, 632
MboI	GATC	3 cut(s)	508, 513, 630
MboII	GAAGA	3 cut(s)	321, 324, 430
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	379
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	198, 295
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	247, 444, 480
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	8 cut(s)	33, 224, 259, 331, 411, 588, 594, 647
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	586
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	587, 614
MspR9I	CCNGG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	615
NdeII	GATC	3 cut(s)	508, 513, 630
NlaIV	GGNNCC	2 cut(s)	21, 523
NmeAIII	GCCGAG	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	37
PaeR7I	CTCGAG	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	610, 641
PfoI	TCCNGGA	1 cut(s)	613
PkrI	GCNGC	2 cut(s)	241, 605
Ple19I	CGATCG	1 cut(s)	516
PleI	GAGTC	3 cut(s)	247, 443, 480
PpsI	GAGTC	3 cut(s)	247, 443, 480
PspFI	CCCAGC	1 cut(s)	649
PspN4I	GGNNCC	2 cut(s)	21, 523
PspPI	GGNCC	1 cut(s)	392
PspXI	VCTCGAGB	1 cut(s)	432
PstI	CTGCAG	1 cut(s)	639
PsuI	RGATCY	1 cut(s)	508
PvuI	CGATCG	1 cut(s)	516
RsaI	GTAC	2 cut(s)	21, 523
RsaNI	GTAC	2 cut(s)	20, 522
SalI	GTCGAC	1 cut(s)	363
SatI	GCNGC	2 cut(s)	240, 604
Sau3AI	GATC	3 cut(s)	508, 513, 630
Sau96I	GGNCC	1 cut(s)	392
SbfI	CCTGCAGG	1 cut(s)	639
SchI	GAGTC	3 cut(s)	247, 444, 480
ScrFI	CCNGG	1 cut(s)	615
SdaI	CCTGCAGG	1 cut(s)	639
SduI	GDGCHC	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	635
Sfr274I	CTCGAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	37
SinI	GGWCC	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse8387I	CCTGCAGG	1 cut(s)	639
Sse9I	AATT	2 cut(s)	198, 295
SsiI	CCGC	2 cut(s)	410, 603
SspMI	CTAG	1 cut(s)	599
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	2 cut(s)	10, 369
TaqI	TCGA	5 cut(s)	37, 258, 364, 433, 489
TasI	AATT	2 cut(s)	198, 295
TauI	GCSGC	1 cut(s)	606
TfiI	GAWTC	2 cut(s)	610, 641
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	55, 189
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	432
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.