Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000981

Physical Location & Seq

Genomic Coordinates Reverse (-)

68810214 .. 68810590

Gene Structure 377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28071

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTATAACTATAAAAAAATGACGCTCTCTCTTTCTCTCGAGCGAGCAACCCTAAGGTCACAATCGGCCTTGATTGGCGGTGGCGGCACTGCAAATTTCCTAACTCTGGAGAGAGAGGTTTCTCAGCCACGTTGTGGCTCTGCATCTTGGATTTGGAAGGGCGGCGATGTCTCTCTTTCTTCTCCCTTCCTTGGTGATGCTAGTGGTTGGATTCGACGTCCCTTTAATATCTGCTTGGATCGGTTTGGTCTTCTGGATGGATCGGAGATTATGATGGTAGTCATCTTGGCTGAGATGGCGCGAGTTTCCTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.51

Weight (kDa)

8.77

Isoelectric Point (pI)

61.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0486651 RchiOBHm_Chr4g0407841 RchiOBHm_Chr6g0312071 RchiOBHm_Chr6g0312081 RchiOBHm_Chr7g0199951
rosa_laevigata	RLG00000000594 RLG00000001567 RLG00000001832 RLG00000004637 RLG00000004640 RLG00000004833 RLG00000006679 RLG00000007158 RLG00000008694 RLG00000009075 RLG00000011512 RLG00000012673 RLG00000015109 RLG00000016150 RLG00000017316 RLG00000019776 RLG00000020284 RLG00000020334 RLG00000021424 RLG00000021718 RLG00000022244 RLG00000023069 RLG00000023643 RLG00000025130 RLG00000027919 RLG00000028123 RLG00000029202 RLG00000030087 RLG00000035075 RLG00000035197 RLG00000035409 RLG00000035824
rosa_multiflora	Rmu_sc0002613.1_g000004 Rmu_ssc0000041.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019920 Rroxscaffold_2G00115510 Rroxscaffold_3G00246460 Rroxscaffold_3G00264120 Rroxscaffold_5G00344800 Rroxscaffold_6G00403360 Rroxscaffold_7G00204700
rosa_rugosa	Rorug02G0168200 Rorug05G0236500 Rorug05G0287700 Rorug05G0492800 Rorug06G0461500 Rorug06G0495600
rosa_samantha	Rh1CG201100 Rh1DG303400 Rh2BG472700 Rh3AG275800 Rh5BG139300 Rh5CG230200 Rh5DG114300 Rh6AG509200 Rh6BG248700 Rh6CG280300 Rh6DG402300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	134
AccII	CGCG	1 cut(s)	301
AciI	CCGC	3 cut(s)	78, 84, 162
AclWI	GGATC	2 cut(s)	246, 268
AcsI	RAATTY	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	217
AdeI	CACNNNGTG	1 cut(s)	134
AfiI	CCNNNNNNNGG	3 cut(s)	106, 134, 191
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	2 cut(s)	246, 268
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	38
AxyI	CCTNAGG	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	242
BccI	CCATC	3 cut(s)	251, 268, 289
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	2 cut(s)	85, 163
BlsI	GCNGC	2 cut(s)	86, 164
BmeT110I	CYCGRG	1 cut(s)	38
BmsI	GCATC	2 cut(s)	152, 187
BpiI	GAAGAC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 134, 191
Bse21I	CCTNAGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	3 cut(s)	106, 134, 191
BseMII	CTCAG	2 cut(s)	137, 282
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	3 cut(s)	106, 134, 191
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	238, 260
BspACI	CCGC	3 cut(s)	78, 84, 162
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	136, 283
BspFNI	CGCG	1 cut(s)	301
BspPI	GGATC	2 cut(s)	246, 268
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	238, 260
BssNI	GRCGYC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	3 cut(s)	53, 123, 291
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	2 cut(s)	241, 263
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	238, 260
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 296
BstUI	CGCG	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	242
Bsu36I	CCTNAGG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	68
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	301
CseI	GACGC	1 cut(s)	31
CviJI	RGCY	4 cut(s)	68, 127, 138, 290
CviKI_1	RGCY	4 cut(s)	68, 127, 138, 290
DdeI	CTNAG	3 cut(s)	53, 123, 291
DpnI	GATC	2 cut(s)	240, 262
DpnII	GATC	2 cut(s)	238, 260
DraIII	CACNNNGTG	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	190
Eco81I	CCTNAGG	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaiI	YATR	3 cut(s)	6, 12, 272
FaqI	GGGAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	85, 163
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	2 cut(s)	85, 163
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	2 cut(s)	85, 163
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	68
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	1 cut(s)	211
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	3 cut(s)	38, 107, 254
Hpy99I	CGWCG	1 cut(s)	219
HpyAV	CCTTC	2 cut(s)	151, 196
HpyCH4IV	ACGT	2 cut(s)	130, 217
HpyCH4V	TGCA	2 cut(s)	92, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 296
HpyF3I	CTNAG	3 cut(s)	53, 123, 291
HpySE526I	ACGT	2 cut(s)	130, 217
Hsp92I	GRCGYC	1 cut(s)	217
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	238, 260
LpnPI	CCDG	2 cut(s)	92, 239
LweI	GCATC	2 cut(s)	152, 187
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	130, 217
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	2 cut(s)	240, 262
MboI	GATC	2 cut(s)	238, 260
MboII	GAAGA	2 cut(s)	171, 242
MluCI	AATT	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	109
MseI	TTAA	1 cut(s)	225
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	84, 296
NdeII	GATC	2 cut(s)	238, 260
NmuCI	GTSAC	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	211
PflMI	CCANNNNNTGG	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	86, 164
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	85, 163
Sau3AI	GATC	2 cut(s)	238, 260
SetI	ASST	4 cut(s)	59, 120, 133, 220
SfaNI	GCATC	2 cut(s)	152, 187
Sfr274I	CTCGAG	1 cut(s)	38
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	3 cut(s)	78, 84, 162
SspMI	CTAG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	190
TaiI	ACGT	2 cut(s)	133, 220
TaqI	TCGA	2 cut(s)	39, 214
TasI	AATT	1 cut(s)	94
TauI	GCSGC	2 cut(s)	87, 165
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	57
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	134
XapI	RAATTY	1 cut(s)	94
XhoI	CTCGAG	1 cut(s)	38
XspI	CTAG	1 cut(s)	201
ZraI	GACGTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.