RLG00000016150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000981
Physical Location & Seq
Reverse (-)
4287978 .. 4292443
4466 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016150

Sequence Viewer

Length: 1209 bp
ATGATGCTCTCTTCTCTCTCGAGAAAAACCCTACGGTTGCAACCAGTCTCAAGTGGCCGCGGTGGTGGCACTGCAAATTTTCTGACTCTCGGCAGAGAGGTTTCTCAGCCACGTTGTGGCTCTACACCTTGGATTCAGAAGGGCGGCGATGTCTCTCTTTCTTTTCCCTTCATTGGTGACGTCGGTGTTTGGCTTCGACCTCCCTTTAATCTATGTTTGGATCAGATTTGTCTTCTGGGTGGATCGGATATTCTGAAGGCAGCTATCTTGGTTGAGATGGTGCGAGTTTCATTGCCTTCAACCTCGTCGGCGGTAAGCAGTGCAGGGTCTTGCGCTGCTGATGTGTTTGGGTTAGGTGATGTGGGACAGGGACCCGGTGATGACTGGGTTATTCAGGCCGGCTTGGGCTCAGTTCCGATCATATGGGATTGTTTGATTTTTATGGCGGCTGAGGACGATGTGATCGGTTGTGAACTAGGTTCTCCTTTAGCGGCAAAGATTGCAGTTGGGCTGCAGTTAGACTGTGACTGTGATGATGGTGATCTTTCTCCTATGTTGGACGGCGGCGAAGGGAAAGGTTGTGGTGGCGGTGGTCTTGCTAGTGGCGGCTGTTTGGTCGCTAGGATTGCTAGGGCAGGCACACCAGAGTCGGAATTTAGGCTGCAGCACGAACTCGCCGCCGGTGATGGATGGCGCGACCTCCAAGCTTGCTGCACTAACCAGGGCTCCAACCTAGCTGCACGGAGAACGTCGATCATGGTGGCGCTGGGCAACTACTCGACGGCGAGTGCCAGAACGATAACAGCGACGACGACGAGGCTACGGAGGCTCGGGATCGCCGATCAATCAAACGGCGACGAGAACGACGGAGTAGTTGGAGCTCTGACCGGAGCTTCTTCGTTGTCTTCAAGCTTGGACTACATCTCCGGCGCGCCCAGCGAGCACCTGCCGAGACCTGCCGAGCACCTGCCGACACATGCCGAGCACCTGCCGAGACCTGCCGAGCACCTACCGACACCTGCCGACACCTGCCGAGCACCTGCCGACACCTGCCGAGCACCTGCCGAGCACCTGCCGAGACCTGCAGAGCACCTGCCGAGACCTGTCGACACCTGCCGAGCACCTGCCGATAGCTGCCTAGCACCTGCCGACACTTGCCGAGGCCCCTGCCGAGAAGCTGCCGACAGCCCTGCACACACCTGCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

403

Amino Acids

41.58

Weight (kDa)

5.12

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AccB7I CCANNNNNTGG 1 cut(s) 116
AccI GTMKAC 1 cut(s) 1107
AccII CGCG 3 cut(s) 60, 696, 932
AclWI GGATC 3 cut(s) 228, 250, 842
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 2 cut(s) 76, 653
AcuI CTGAAG 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 180
AdeI CACNNNGTG 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 116, 173
AgsI TTSAA 2 cut(s) 300, 909
AjnI CCWGG 1 cut(s) 720
AluBI AGCT 8 cut(s) 263, 707, 737, 881, 893, 912, 1134, 1178
AluI AGCT 8 cut(s) 263, 707, 737, 881, 893, 912, 1134, 1178
Alw26I GTCTC 6 cut(s) 52, 157, 946, 988, 1072, 1093
AlwI GGATC 3 cut(s) 228, 250, 842
Ama87I CYCGRG 2 cut(s) 19, 830
AoxI GGCC 3 cut(s) 55, 396, 1162
ApeKI GCWGC 9 cut(s) 260, 335, 511, 661, 664, 711, 737, 1134, 1178
ApoI RAATTY 2 cut(s) 76, 653
AscI GGCGCGCC 1 cut(s) 930
AspLEI GCGC 5 cut(s) 335, 696, 766, 932, 934
AspS9I GGNCC 2 cut(s) 371, 1163
AsuC2I CCSGG 1 cut(s) 375
AsuHPI GGTGA 5 cut(s) 188, 368, 389, 551, 695
AvaI CYCGRG 2 cut(s) 19, 830
AvaII GGWCC 1 cut(s) 371
BanII GRGCYC 3 cut(s) 410, 728, 883
BbsI GAAGAC 2 cut(s) 224, 897
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 9 cut(s) 272, 322, 498, 648, 676, 698, 724, 1121, 1165
BccI CCATC 4 cut(s) 271, 530, 680, 684
BceAI ACGGC 3 cut(s) 577, 798, 868
BcgI CGANNNNNNTGC 4 cut(s) 1149, 1172, 1183, 1206
BciT130I CCWGG 1 cut(s) 722
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 6 cut(s) 52, 157, 946, 988, 1072, 1093
BfaI CTAG 6 cut(s) 476, 600, 621, 630, 734, 1139
BfmI CTRYAG 3 cut(s) 512, 662, 1083
BfoI RGCGCY 1 cut(s) 767
Bme1390I CCNGG 2 cut(s) 375, 722
Bme18I GGWCC 1 cut(s) 371
BmeT110I CYCGRG 2 cut(s) 19, 830
BmgT120I GGNCC 2 cut(s) 371, 1163
BmiI GGNNCC 4 cut(s) 372, 373, 727, 1165
BmrFI CCNGG 2 cut(s) 375, 722
BmrI ACTGGG 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 2 cut(s) 224, 897
Bpu10I CCTNAGC 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 375
BsaBI GATNNNNATC 1 cut(s) 540
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 4 cut(s) 946, 988, 1072, 1093
BsaJI CCNNGG 4 cut(s) 58, 128, 721, 1159
BsaWI WCCGGW 1 cut(s) 887
BsaXI ACNNNNNCTCC 4 cut(s) 710, 740, 908, 938
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 173
Bse118I RCCGGY 2 cut(s) 398, 680
Bse1I ACTGG 2 cut(s) 44, 389
Bse3DI GCAATG 1 cut(s) 290
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 4 cut(s) 58, 128, 721, 1159
BseGI GGATG 1 cut(s) 695
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 116, 173
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 3 cut(s) 119, 423, 441
BseNI ACTGG 2 cut(s) 44, 389
BsePI GCGCGC 1 cut(s) 930
BseXI GCAGC 9 cut(s) 272, 322, 498, 648, 676, 698, 724, 1121, 1165
BseYI CCCAGC 2 cut(s) 766, 935
BsgI GTGCAG 4 cut(s) 342, 697, 723, 1176
Bsh1236I CGCG 3 cut(s) 60, 696, 932
BshFI GGCC 3 cut(s) 57, 398, 1164
BsiHKCI CYCGRG 2 cut(s) 19, 830
BsiSI CCGG 5 cut(s) 375, 399, 681, 888, 927
BslFI GGGAC 2 cut(s) 378, 384
BslI CCNNNNNNNGG 2 cut(s) 116, 173
BsmAI GTCTC 6 cut(s) 52, 157, 946, 988, 1072, 1093
BsmFI GGGAC 2 cut(s) 378, 384
BsnI GGCC 3 cut(s) 57, 398, 1164
Bso31I GGTCTC 4 cut(s) 946, 988, 1072, 1093
BsoBI CYCGRG 2 cut(s) 19, 830
Bsp143I GATC 8 cut(s) 220, 242, 417, 462, 541, 753, 834, 841
BspANI GGCC 3 cut(s) 57, 398, 1164
BspCNI CTCAG 3 cut(s) 118, 422, 442
BspFNI CGCG 3 cut(s) 60, 696, 932
BspLI GGNNCC 4 cut(s) 372, 373, 727, 1165
BspMAI CTGCAG 3 cut(s) 516, 666, 1087
BspPI GGATC 3 cut(s) 228, 250, 842
BspTNI GGTCTC 4 cut(s) 946, 988, 1072, 1093
BsrDI GCAATG 1 cut(s) 290
BsrFI RCCGGY 2 cut(s) 398, 680
BsrI ACTGG 2 cut(s) 44, 389
BssAI RCCGGY 2 cut(s) 398, 680
BssECI CCNNGG 4 cut(s) 58, 128, 721, 1159
BssHII GCGCGC 1 cut(s) 930
BssMI GATC 8 cut(s) 220, 242, 417, 462, 541, 753, 834, 841
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 3 cut(s) 36, 524, 530
Bst6I CTCTTC 1 cut(s) 16
BstACI GRCGYC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 500
BstC8I GCNNGC 5 cut(s) 400, 637, 709, 932, 941
BstDEI CTNAG 3 cut(s) 105, 409, 450
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 695
BstFNI CGCG 3 cut(s) 60, 696, 932
BstH2I RGCGCY 1 cut(s) 767
BstHHI GCGC 5 cut(s) 335, 696, 766, 932, 934
BstKTI GATC 8 cut(s) 223, 245, 420, 465, 544, 756, 837, 844
BstMAI GTCTC 6 cut(s) 52, 157, 946, 988, 1072, 1093
BstMBI GATC 8 cut(s) 220, 242, 417, 462, 541, 753, 834, 841
BstMWI GCNNNNNNNGC 6 cut(s) 66, 500, 626, 826, 936, 940
BstNI CCWGG 1 cut(s) 722
BstNSI RCATGY 1 cut(s) 980
BstSCI CCNGG 2 cut(s) 373, 720
BstSFI CTRYAG 3 cut(s) 512, 662, 1083
BstUI CGCG 3 cut(s) 60, 696, 932
BstV1I GCAGC 9 cut(s) 272, 322, 498, 648, 676, 698, 724, 1121, 1165
BstV2I GAAGAC 2 cut(s) 224, 897
BsuRI GGCC 3 cut(s) 57, 398, 1164
BtgI CCRYGG 1 cut(s) 58
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 695
BtsI GCAGTG 2 cut(s) 69, 325
BtsIMutI CAGTG 2 cut(s) 69, 325
Cac8I GCNNGC 5 cut(s) 400, 637, 709, 932, 941
CfoI GCGC 5 cut(s) 335, 696, 766, 932, 934
Cfr10I RCCGGY 2 cut(s) 398, 680
Cfr13I GGNCC 2 cut(s) 371, 1163
Cfr42I CCGCGG 1 cut(s) 61
CviAII CATG 2 cut(s) 757, 977
DdeI CTNAG 3 cut(s) 105, 409, 450
DpnI GATC 8 cut(s) 222, 244, 419, 464, 543, 755, 836, 843
DpnII GATC 8 cut(s) 220, 242, 417, 462, 541, 753, 834, 841
DraIII CACNNNGTG 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 881
Eco130I CCWWGG 1 cut(s) 128
Eco24I GRGCYC 3 cut(s) 410, 728, 883
Eco31I GGTCTC 4 cut(s) 946, 988, 1072, 1093
Eco47I GGWCC 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 881
Eco57I CTGAAG 1 cut(s) 275
Eco88I CYCGRG 2 cut(s) 19, 830
EcoICRI GAGCTC 1 cut(s) 881
EcoO109I RGGNCCY 2 cut(s) 371, 1163
EcoRII CCWGG 1 cut(s) 720
EcoT14I CCWWGG 1 cut(s) 128
EcoT38I GRGCYC 3 cut(s) 410, 728, 883
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 2 cut(s) 760, 980
FaiI YATR 7 cut(s) 214, 422, 424, 443, 554, 758, 978
FaqI GGGAC 2 cut(s) 378, 384
FatI CATG 2 cut(s) 756, 976
FauNDI CATATG 1 cut(s) 422
FblI GTMKAC 1 cut(s) 1107
FokI GGATG 1 cut(s) 702
FriOI GRGCYC 3 cut(s) 410, 728, 883
FspBI CTAG 6 cut(s) 476, 600, 621, 630, 734, 1139
GlaI GCGC 5 cut(s) 334, 695, 765, 931, 933
GsaI CCCAGC 2 cut(s) 770, 939
HaeII RGCGCY 1 cut(s) 767
HaeIII GGCC 3 cut(s) 57, 398, 1164
HapII CCGG 5 cut(s) 375, 399, 681, 888, 927
HhaI GCGC 5 cut(s) 335, 696, 766, 932, 934
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 2 cut(s) 760, 980
Hin6I GCGC 5 cut(s) 333, 694, 764, 930, 932
HinP1I GCGC 5 cut(s) 333, 694, 764, 930, 932
HincII GTYRAC 1 cut(s) 1108
HindII GTYRAC 1 cut(s) 1108
HindIII AAGCTT 2 cut(s) 705, 910
HinfI GANTC 3 cut(s) 85, 133, 647
HpaII CCGG 5 cut(s) 375, 399, 681, 888, 927
HphI GGTGA 5 cut(s) 188, 368, 389, 551, 695
Hpy166II GTNNAC 2 cut(s) 473, 1108
Hpy188I TCNGA 8 cut(s) 84, 138, 225, 247, 255, 417, 652, 885
Hpy188III TCNNGA 3 cut(s) 19, 21, 832
Hpy8I GTNNAC 2 cut(s) 473, 1108
Hpy99I CGWCG 9 cut(s) 185, 310, 754, 784, 811, 814, 817, 860, 869
HpyAV CCTTC 5 cut(s) 133, 178, 250, 306, 563
HpyCH4III ACNGT 3 cut(s) 36, 524, 530
HpyCH4IV ACGT 3 cut(s) 112, 180, 749
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 500, 626, 826, 936, 940
HpyF3I CTNAG 3 cut(s) 105, 409, 450
HpySE526I ACGT 3 cut(s) 112, 180, 749
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 2 cut(s) 760, 980
HspAI GCGC 5 cut(s) 333, 694, 764, 930, 932
KflI GGGWCCC 1 cut(s) 371
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
KspI CCGCGG 1 cut(s) 61
Kzo9I GATC 8 cut(s) 220, 242, 417, 462, 541, 753, 834, 841
LmnI GCTCC 3 cut(s) 731, 878, 890
Lsp1109I GCAGC 9 cut(s) 272, 322, 498, 648, 676, 698, 724, 1121, 1165
MaeI CTAG 6 cut(s) 476, 600, 621, 630, 734, 1139
MaeII ACGT 3 cut(s) 112, 180, 749
MaeIII GTNAC 2 cut(s) 176, 524
MalI GATC 8 cut(s) 222, 244, 419, 464, 543, 755, 836, 843
MboI GATC 8 cut(s) 220, 242, 417, 462, 541, 753, 834, 841
MboII GAAGA 4 cut(s) 3, 224, 888, 897
MluCI AATT 2 cut(s) 76, 653
MlyI GAGTC 2 cut(s) 79, 656
MmeI TCCRAC 4 cut(s) 537, 630, 753, 856
MnlI CCTC 8 cut(s) 91, 210, 313, 445, 710, 810, 819, 1154
MroNI GCCGGC 1 cut(s) 398
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 5 cut(s) 375, 399, 681, 888, 927
MspR9I CCNGG 2 cut(s) 375, 722
MvaI CCWGG 1 cut(s) 722
MvnI CGCG 3 cut(s) 60, 696, 932
MwoI GCNNNNNNNGC 6 cut(s) 66, 500, 626, 826, 936, 940
NaeI GCCGGC 1 cut(s) 400
NciI CCSGG 1 cut(s) 375
NdeI CATATG 1 cut(s) 422
NdeII GATC 8 cut(s) 220, 242, 417, 462, 541, 753, 834, 841
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 2 cut(s) 760, 980
NlaIV GGNNCC 4 cut(s) 372, 373, 727, 1165
NmuCI GTSAC 2 cut(s) 176, 524
NspI RCATGY 1 cut(s) 980
PaeR7I CTCGAG 1 cut(s) 19
PalAI GGCGCGCC 1 cut(s) 930
PauI GCGCGC 1 cut(s) 930
PcsI WCGNNNNNNNCGW 2 cut(s) 803, 837
PdiI GCCGGC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 133
PflMI CCANNNNNTGG 1 cut(s) 116
PleI GAGTC 2 cut(s) 79, 655
PpsI GAGTC 2 cut(s) 79, 655
PpuMI RGGWCCY 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 883
Psp5II RGGWCCY 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 720
PspFI CCCAGC 2 cut(s) 766, 935
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 4 cut(s) 372, 373, 727, 1165
PspPI GGNCC 2 cut(s) 371, 1163
PspPPI RGGWCCY 1 cut(s) 371
PstI CTGCAG 3 cut(s) 516, 666, 1087
PteI GCGCGC 1 cut(s) 930
SacI GAGCTC 1 cut(s) 883
SacII CCGCGG 1 cut(s) 61
SalI GTCGAC 1 cut(s) 1106
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 8 cut(s) 220, 242, 417, 462, 541, 753, 834, 841
Sau96I GGNCC 2 cut(s) 371, 1163
SchI GAGTC 2 cut(s) 79, 656
ScrFI CCNGG 2 cut(s) 375, 722
SfcI CTRYAG 3 cut(s) 512, 662, 1083
Sfr274I CTCGAG 1 cut(s) 19
Sfr303I CCGCGG 1 cut(s) 61
SgrAI CRCCGGYG 1 cut(s) 680
SgrBI CCGCGG 1 cut(s) 61
SgsI GGCGCGCC 1 cut(s) 930
SinI GGWCC 1 cut(s) 371
SlaI CTCGAG 1 cut(s) 19
SmlI CTYRAG 2 cut(s) 19, 49
SmoI CTYRAG 2 cut(s) 19, 49
Sse9I AATT 2 cut(s) 76, 653
SspMI CTAG 6 cut(s) 476, 600, 621, 630, 734, 1139
SstI GAGCTC 1 cut(s) 883
StyD4I CCNGG 2 cut(s) 373, 720
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 3 cut(s) 36, 524, 530
TaiI ACGT 3 cut(s) 115, 183, 752
TaqI TCGA 5 cut(s) 20, 196, 752, 779, 1107
TasI AATT 2 cut(s) 76, 653
TauI GCSGC 7 cut(s) 60, 147, 449, 494, 567, 609, 680
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 76, 325
TseFI GTSAC 2 cut(s) 176, 524
TseI GCWGC 9 cut(s) 260, 335, 511, 661, 664, 711, 737, 1134, 1178
Tsp45I GTSAC 2 cut(s) 176, 524
TspDTI ATGAA 2 cut(s) 160, 279
TspGWI ACGGA 3 cut(s) 757, 838, 882
TspRI CASTG 2 cut(s) 76, 325
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 2 cut(s) 76, 653
XceI RCATGY 1 cut(s) 980
XhoI CTCGAG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 1107
XspI CTAG 6 cut(s) 476, 600, 621, 630, 734, 1139
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.